FN2209-S Chr1 10995661 A-G 0 0 Single Base Substitution 0 HET FN2209-S Chr1 124172 124177 0 0 Deletion 5 frameshift_variant Homo LOC_Os01g01260 transposon protein, putative, unclassified, expressed FN2209-S Chr1 14857 14859 0 0 Deletion 2 Homo FN2209-S Chr1 21738075 C-A 0 0 Single Base Substitution 0 Homo FN2209-S Chr1 25554691 25554700 0 0 Deletion 9 Homo FN2209-S Chr1 33387095 G-A 0 0 Single Base Substitution 0 HET FN2209-S Chr1 36199299 36199301 0 0 Deletion 2 HET FN2209-S Chr1 38376929 T-C 0 0 Single Base Substitution 0 Homo FN2209-S Chr1 38798575 A-T 0 0 Single Base Substitution 0 HET FN2209-S Chr1 38808240 G-A 0 0 Single Base Substitution 0 Homo FN2209-S Chr1 4151363 C-A 0 0 Single Base Substitution 0 HET FN2209-S Chr1 5459181 A-G 0 0 Single Base Substitution 0 HET FN2209-S Chr10 22905633 G-T 0 0 Single Base Substitution 0 Homo FN2209-S Chr10 7858941 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g15010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2209-S Chr10 8667874 8667875 0 0 Insertion 1 HET FN2209-S Chr11 13979725 G-A 0 0 Single Base Substitution 0 HET FN2209-S Chr11 16082997 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g27960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2209-S Chr11 16689640 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g28790 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr11 2667814 T-A 0 0 Single Base Substitution 0 HET FN2209-S Chr11 7727635 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g13960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2209-S Chr11 8498812 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2209-S Chr11 9810348 A-G 0 0 Single Base Substitution 0 HET FN2209-S Chr12 12527777 C-A 0 0 Single Base Substitution 0 HET FN2209-S Chr12 14078239 Chr8 10124050 0 Translocation 0 FN2209-S Chr12 14078239 Chr8 10124050 0 Translocation 0 LOC_Os08g16540 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr12 8776201 8776203 0 0 Insertion 2 HET FN2209-S Chr2 12543034 C-A 0 0 Single Base Substitution 0 HET FN2209-S Chr2 15254096 15254099 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os02g25970 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr2 15895434 A-C 0 0 Single Base Substitution 0 Homo FN2209-S Chr2 17584129 17584142 0 0 Deletion 13 HET FN2209-S Chr2 19517941 C-T 0 0 Single Base Substitution 0 Homo FN2209-S Chr2 22391340 22391342 0 0 Deletion 2 Homo FN2209-S Chr2 3386552 C-T 0 0 Single Base Substitution 0 Homo FN2209-S Chr2 5909318 C-A 0 0 Single Base Substitution 0 Homo FN2209-S Chr3 19417079 G-T 0 0 Single Base Substitution 0 HET FN2209-S Chr3 19668254 C-T 0 0 Single Base Substitution 0 HET FN2209-S Chr3 23348111 G-T 0 0 Single Base Substitution 0 HET FN2209-S Chr3 26735183 C-A 0 0 Single Base Substitution 0 HET FN2209-S Chr3 2688492 2688502 0 0 Deletion 10 Homo FN2209-S Chr3 4316404 T-A 0 0 Single Base Substitution 0 HET FN2209-S Chr4 12708259 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g22440 expressed protein FN2209-S Chr4 26083548 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g44000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44870 C2 domain containing protein, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44880 expressed protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44890 tRNA-dihydrouridine synthase, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44900 lectin-like receptor kinase, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44910 receptor like protein kinase, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44920 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44924 short-chain dehydrogenase/reductase, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44930 expressed protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44940 hypothetical protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44950 short-chain dehydrogenase/reductase, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44960 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44970 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44980 short-chain dehydrogenase/reductase, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g44990 expressed protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45000 short-chain dehydrogenase/reductase, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45010 OsPLIM2b - LIM domain protein, putative actin-binding protein and transcription factor, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45020 MYB family transcription factor, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45030 hypothetical protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45040 DEAD-box ATP-dependent RNA helicase, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45050 hypothetical protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45060 MYB family transcription factor, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45070 remorin, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45080 expressed protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45090 cytochrome b561, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45100 expressed protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45110 serpin domain containing protein, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45120 serpin domain containing protein, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45130 heavy-metal-associated domain-containing protein, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45140 DTA2, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45160 DTA2, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45170 leucine-rich repeat family protein, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45180 EF hand family protein, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45190 MSP domain containing protein, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45200 DNA binding protein, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45210 peroxisomal biogenesis factor 11, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45220 expressed protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45230 hypothetical protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45240 expressed protein FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45270 aspartyl protease family protein, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45280 histidine triad family protein, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45290 glycosyl hydrolases, putative, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45300 transposon protein, putative, unclassified, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45320 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr4 26560001 26798000 0 0 Deletion 237999 LOC_Os04g45330 YABBY domain containing protein, putative, expressed FN2209-S Chr4 29680520 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g49780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2209-S Chr4 32393149 C-A 0 0 Single Base Substitution 0 HET FN2209-S Chr4 32480006 32480009 0 0 Deletion 3 HET FN2209-S Chr4 8405847 C-T 0 0 Single Base Substitution 0 HET FN2209-S Chr4 9088817 9088819 0 0 Deletion 2 HET FN2209-S Chr5 10533954 C-A 0 0 Single Base Substitution 0 HET FN2209-S Chr5 13517100 T-C 0 0 Single Base Substitution 0 Homo FN2209-S Chr5 1912532 C-T 0 0 Single Base Substitution 0 HET FN2209-S Chr5 25137125 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g43220 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2209-S Chr5 3328649 3328652 0 0 Deletion 3 Homo FN2209-S Chr6 10670143 C-T 0 0 Single Base Substitution 0 Homo FN2209-S Chr6 14301737 A-G 0 0 Single Base Substitution 0 Homo FN2209-S Chr6 23724194 T-A 0 0 Single Base Substitution 0 Homo FN2209-S Chr6 26492006 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g43980 expressed protein FN2209-S Chr6 9199565 A-G 0 0 Single Base Substitution 0 HET FN2209-S Chr7 14220447 T-C 0 0 Single Base Substitution 0 HET FN2209-S Chr7 2246904 A-G 0 0 Single Base Substitution 0 HET FN2209-S Chr7 27522146 27522272 0 0 Deletion 126 HET FN2209-S Chr7 7074701 C-G 0 0 Single Base Substitution 0 HET FN2209-S Chr8 12650272 12650278 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os08g21180 maSp2a, putative, expressed FN2209-S Chr8 15959031 C-T 0 0 Single Base Substitution 0 Homo FN2209-S Chr8 16264001 16303000 0 0 Deletion 38999 LOC_Os08g26740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2209-S Chr8 16264001 16303000 0 0 Deletion 38999 LOC_Os08g26750 retrotransposon protein, putative, Ty3-gypsy subclass FN2209-S Chr8 16264001 16303000 0 0 Deletion 38999 LOC_Os08g26760 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr8 16264001 16303000 0 0 Deletion 38999 LOC_Os08g26770 retrotransposon protein, putative, unclassified FN2209-S Chr8 16264001 16303000 0 0 Deletion 38999 LOC_Os08g26780 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr8 16264001 16303000 0 0 Deletion 38999 LOC_Os08g26790 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr8 16264001 16303000 0 0 Deletion 38999 LOC_Os08g26800 retrotransposon protein, putative, Ty3-gypsy subclass FN2209-S Chr8 16264001 16303000 0 0 Deletion 38999 LOC_Os08g26810 expressed protein FN2209-S Chr8 17417219 C-A 0 0 Single Base Substitution 0 HET FN2209-S Chr8 22650784 22650785 0 0 Deletion 1 frameshift_variant HET LOC_Os08g35910 expressed protein FN2209-S Chr8 27732747 27732748 0 0 Deletion 1 Homo FN2209-S Chr8 5529804 6485761 0 0 Inversion 0 FN2209-S Chr9 10258671 C-A 0 0 Single Base Substitution 0 HET FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10460 transposon protein, putative, unclassified FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10480 retrotransposon protein, putative, Ty3-gypsy subclass FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10500 retrotransposon protein, putative, Ty3-gypsy subclass FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10520 hypothetical protein FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10530 retrotransposon protein, putative, unclassified, expressed FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10550 expressed protein FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10560 expressed protein FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10570 expressed protein FN2209-S Chr9 5716001 5776000 0 0 Deletion 59999 LOC_Os09g10580 expressed protein FN2209-S Chr9 7108162 C-A 0 0 Single Base Substitution 0 HET