FN2219-S Chr1 1872608 1872846 0 0 Deletion 238 HET FN2219-S Chr1 7664434 7664454 0 0 Deletion 20 Homo FN2219-S Chr10 21961886 C-T 0 0 Single Base Substitution 0 HET FN2219-S Chr10 2689392 Chr2 9189896 0 Translocation 0 FN2219-S Chr10 275579 C-T 0 0 Single Base Substitution 0 HET FN2219-S Chr10 3866510 3866511 0 0 Deletion 1 HET FN2219-S Chr10 4199938 Chr2 9189903 0 Translocation 0 FN2219-S Chr10 4200190 4924241 0 0 Inversion 0 FN2219-S Chr10 4200463 A-T 0 0 Single Base Substitution 0 HET FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08030 retrotransposon protein, putative, Ty3-gypsy subclass FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08050 lecithine cholesterol acyltransferase, putative, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08070 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08090 retrotransposon protein, putative, Ty3-gypsy subclass FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08100 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08110 retrotransposon protein, putative, Ty3-gypsy subclass FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08130 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08140 transposon protein, putative, CACTA, En/Spm sub-class FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08150 transposon protein, putative, CACTA, En/Spm sub-class FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08170 expressed protein FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08200 retrotransposon protein, putative, Ty3-gypsy subclass FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08220 expressed protein FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08230 retrotransposon, putative, centromere-specific, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08240 retrotransposon, putative, centromere-specific, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08280 DNA binding protein, putative, expressed FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08290 expressed protein FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08300 retrotransposon protein, putative, unclassified FN2219-S Chr10 4349001 4511000 0 0 Deletion 161999 LOC_Os10g08319 cytochrome P450, putative, expressed FN2219-S Chr10 4352241 4519861 0 0 Inversion 0 LOC_Os10g08030 retrotransposon protein, putative, Ty3-gypsy subclass FN2219-S Chr10 4508943 4519865 0 0 Inversion 0 FN2219-S Chr10 7139156 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr11 13614651 13614652 0 0 Insertion 1 HET FN2219-S Chr11 15186306 A-G 0 0 Single Base Substitution 0 Homo FN2219-S Chr11 19220259 Chr7 6488206 0 Translocation 0 FN2219-S Chr11 19338756 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr11 27275445 C-T 0 0 Single Base Substitution 0 HET FN2219-S Chr11 27275452 A-G 0 0 Single Base Substitution 0 HET FN2219-S Chr11 28408444 Chr9 408710 0 Translocation 0 LOC_Os09g01580 expressed protein FN2219-S Chr11 28408444 Chr9 408710 0 Translocation 0 LOC_Os11g47240 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed FN2219-S Chr12 1100864 Chr6 23611616 0 Translocation 0 LOC_Os12g02970 RNA binding protein, putative, expressed FN2219-S Chr12 12168040 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr12 16794517 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr12 20153328 Chr11 14826897 0 Translocation 0 LOC_Os11g25980 phospholipid-transporting ATPase 2, putative, expressed FN2219-S Chr12 20153328 Chr11 14826897 0 Translocation 0 LOC_Os12g33320 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr12 7632001 7698000 0 0 Deletion 65999 LOC_Os12g13590 exocyst complex component 5, putative, expressed FN2219-S Chr12 7632001 7698000 0 0 Deletion 65999 LOC_Os12g13600 expressed protein FN2219-S Chr12 7632001 7698000 0 0 Deletion 65999 LOC_Os12g13610 CHIT9 - Chitinase family protein precursor, putative, expressed FN2219-S Chr12 7632001 7698000 0 0 Deletion 65999 LOC_Os12g13620 retrotransposon protein, putative, unclassified FN2219-S Chr12 7632001 7698000 0 0 Deletion 65999 LOC_Os12g13640 glycosyltransferase, putative, expressed FN2219-S Chr12 7632001 7698000 0 0 Deletion 65999 LOC_Os12g13650 expressed protein FN2219-S Chr12 7632001 7698000 0 0 Deletion 65999 LOC_Os12g13660 expressed protein FN2219-S Chr12 7632001 7698000 0 0 Deletion 65999 LOC_Os12g13670 expressed protein FN2219-S Chr12 9390808 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr2 11270492 T-C 0 0 Single Base Substitution 0 HET FN2219-S Chr2 11270502 A-T 0 0 Single Base Substitution 0 HET FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20410 GTP binding protein, putative, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20420 retrotransposon protein, putative, LINE subclass, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20430 WD domain, G-beta repeat domain containing protein, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20450 hypothetical protein FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20460 Leucine Rich Repeat family protein, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20470 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20480 resistance protein candidate, putative, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20490 expressed protein FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20500 expressed protein FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20510 expressed protein FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20520 retrotransposon, putative, centromere-specific FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20530 expressed protein FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20540 fasciclin domain containing protein, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20550 hypothetical protein FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20560 fasciclin domain containing protein, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20570 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20590 MBTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20600 BTB/POZ domain containing protein, putative, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20620 speckle-type POZ protein, putative, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20630 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20640 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2219-S Chr2 12031001 12180000 0 0 Deletion 148999 LOC_Os02g20670 retrotransposon protein, putative, unclassified FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20690 speckle-type POZ protein, putative FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20700 expressed protein FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20710 expressed protein FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20720 MBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20729 expressed protein FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20740 retrotransposon protein, putative, unclassified FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20750 expressed protein FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20760 transposon protein, putative, Mariner sub-class, expressed FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20770 transposon protein, putative, Pong sub-class, expressed FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20780 transposon protein, putative, Pong sub-class, expressed FN2219-S Chr2 12186001 12277000 0 0 Deletion 90999 LOC_Os02g20790 hypothetical protein FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24370 retrotransposon protein, putative, Ty3-gypsy subclass FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24380 hypothetical protein FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24390 expressed protein FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24400 expressed protein FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24410 expressed protein FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24420 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24430 expressed protein FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24460 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24470 expressed protein FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24480 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24490 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24500 retrotransposon protein, putative, unclassified FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24520 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24530 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24540 expressed protein FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24550 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24560 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr2 14133001 14237000 0 0 Deletion 103999 LOC_Os02g24570 retrotransposon protein, putative, unclassified FN2219-S Chr2 19767925 T-C 0 0 Single Base Substitution 0 HET FN2219-S Chr2 24787000 G-T 0 0 Single Base Substitution 0 HET FN2219-S Chr2 26848475 T-C 0 0 Single Base Substitution 0 HET FN2219-S Chr3 1702122 T-G 0 0 Single Base Substitution 0 HET FN2219-S Chr3 17043910 17841514 0 0 Inversion 0 LOC_Os03g29910 expressed protein FN2219-S Chr3 17043910 17841514 0 0 Inversion 0 LOC_Os03g31310 circadian clock coupling factor-related, putative, expressed FN2219-S Chr3 17050603 Chr2 15405814 0 Translocation 0 FN2219-S Chr3 17633595 Chr2 14692352 0 Translocation 0 FN2219-S Chr3 17633821 17841524 0 0 Inversion 0 FN2219-S Chr3 17633821 17841524 0 0 Inversion 0 LOC_Os03g31310 circadian clock coupling factor-related, putative, expressed FN2219-S Chr3 28210451 28210453 0 0 Deletion 2 HET FN2219-S Chr3 31523365 31878391 0 0 Inversion 0 FN2219-S Chr3 31523375 31878395 0 0 Inversion 0 FN2219-S Chr3 3384042 C-T 0 0 Single Base Substitution 0 HET FN2219-S Chr3 35213458 A-G 0 0 Single Base Substitution 0 HET FN2219-S Chr3 6147830 A-G 0 0 Single Base Substitution 0 HET FN2219-S Chr4 21617795 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr4 2526703 Chr3 24316300 0 Translocation 0 LOC_Os03g43550 retrotransposon protein, putative, unclassified FN2219-S Chr4 2526703 Chr3 24316300 0 Translocation 0 LOC_Os04g05104 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr4 25756816 Chr1 2816736 0 Translocation 0 FN2219-S Chr4 27597886 27597887 0 0 Deletion 1 HET FN2219-S Chr4 28745359 A-T 0 0 Single Base Substitution 0 HET FN2219-S Chr4 32609337 C-A 0 0 Single Base Substitution 0 HET FN2219-S Chr4 8381330 C-A 0 0 Single Base Substitution 0 Homo FN2219-S Chr5 4173891 4173897 0 0 Deletion 6 inframe_deletion Homo LOC_Os05g07740 receptor-like protein kinase 2 precursor, putative, expressed FN2219-S Chr6 11327662 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os06g19830 retrotransposon protein, putative, unclassified FN2219-S Chr6 11980950 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr6 19865710 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr6 23611671 Chr3 17633596 0 Translocation 0 FN2219-S Chr6 23612833 Chr2 14135002 0 Translocation 0 FN2219-S Chr6 25823030 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g42980 retrotransposon protein, putative, unclassified, expressed FN2219-S Chr6 30097281 G-T 0 0 Single Base Substitution 0 HET FN2219-S Chr6 8010069 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr7 15390164 A-T 0 0 Single Base Substitution 0 HET FN2219-S Chr7 16836657 16836658 0 0 Insertion 1 frameshift_variant&stop_gained HET LOC_Os07g28760 transposon protein, putative, unclassified, expressed FN2219-S Chr7 24848609 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr7 24854156 24854158 0 0 Insertion 2 HET FN2219-S Chr7 25388916 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g42410 expressed protein FN2219-S Chr7 5740139 Chr1 10486471 0 Translocation 0 FN2219-S Chr8 15994001 16007000 0 0 Deletion 12999 LOC_Os08g26240 hypothetical protein FN2219-S Chr8 15994001 16007000 0 0 Deletion 12999 LOC_Os08g26250 retrotransposon protein, putative, unclassified FN2219-S Chr8 20198673 C-G 0 0 Single Base Substitution 0 HET FN2219-S Chr8 20592197 T-C 0 0 Single Base Substitution 0 HET FN2219-S Chr8 25435292 T-C 0 0 Single Base Substitution 0 HET FN2219-S Chr9 11635836 G-T 0 0 Single Base Substitution 0 HET FN2219-S Chr9 21161799 G-A 0 0 Single Base Substitution 0 HET FN2219-S Chr9 4908518 A-G 0 0 Single Base Substitution 0 HET FN2219-S Chr9 7367299 7367309 0 0 Deletion 10 frameshift_variant Homo LOC_Os09g12810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2219-S Chr9 9177990 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed