FN2230-S Chr1 11567482 11567483 0 0 Deletion 1 HET FN2230-S Chr1 15284063 15284065 0 0 Insertion 2 HET FN2230-S Chr1 17071998 T-A 0 0 Single Base Substitution 0 HET FN2230-S Chr1 17627699 G-C 0 0 Single Base Substitution 0 HET FN2230-S Chr1 24267255 G-A 0 0 Single Base Substitution 0 HET FN2230-S Chr1 28867729 G-A 0 0 Single Base Substitution 0 HET FN2230-S Chr1 35817899 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g61890 AT hook motif family protein, expressed FN2230-S Chr1 3773308 3773312 0 0 Insertion 4 HET FN2230-S Chr1 5502313 5502315 0 0 Deletion 2 HET FN2230-S Chr10 15845599 T-G 0 0 Single Base Substitution 0 HET FN2230-S Chr10 1917827 A-G 0 0 Single Base Substitution 0 HET FN2230-S Chr10 20414342 20414344 0 0 Deletion 2 HET FN2230-S Chr10 253059 253062 0 0 Deletion 3 HET FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17860 retrotransposon protein, putative, Ty3-gypsy subclass FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17870 retrotransposon protein, putative, Ty3-gypsy subclass FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17880 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17890 OsWAK113 - OsWAK receptor-like protein OsWAK-RLP, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17910 OsWAK114 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17920 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17930 OsFBX381 - F-box domain containing protein, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17940 OsFBX382 - F-box domain containing protein, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17950 TKL_IRAK_DUF26-lc.5 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17960 TKL_IRAK_DUF26-lc.26 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g17990 phosphatidate cytidylyltransferase, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18010 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18026 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18042 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18060 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18070 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18080 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18084 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18090 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18099 WRKY18, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18150 crooked neck, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18160 transposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18170 RALFL16 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18180 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18190 retrotransposon protein, putative, Ty1-copia subclass FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18210 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18220 GHMP kinases ATP-binding protein, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18234 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18250 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18260 TKL_IRAK_DUF26-lc.27 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18294 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18310 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18340 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18350 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18360 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18364 ZOS10-03 - C2H2 zinc finger protein, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18370 transcriptional regulator, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18380 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18390 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18400 beta-galactosidase precursor, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18410 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18420 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18430 agmatine coumaroyltransferase, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18440 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18450 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18460 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18470 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18480 glucosyltransferase, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18490 cytokinin-O-glucosyltransferase 2, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18500 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18510 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18520 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18530 cytokinin-O-glucosyltransferase 2, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18540 retrotransposon protein, putative, Ty3-gypsy subclass FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18590 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18600 retrotransposon protein, putative, Ty3-gypsy subclass FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18610 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18620 retrotransposon protein, putative, Ty3-gypsy subclass FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18630 retrotransposon protein, putative, Ty3-gypsy subclass FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18640 retrotransposon protein, putative, Ty3-gypsy subclass FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18670 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18700 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18704 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18710 hypothetical protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18720 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18730 retrotransposon protein, putative, unclassified FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18750 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18760 dirigent, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18770 retrotransposon protein, putative, unclassified FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18780 retrotransposon protein, putative, unclassified FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18800 conserved hypothetical protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18810 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18820 dirigent, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18850 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18860 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18870 dirigent, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18880 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18890 HNH endonuclease domain-containing protein, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18910 hypothetical protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18920 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18930 retrotransposon, putative, centromere-specific FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18940 retrotransposon, putative, centromere-specific, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18960 retrotransposon, putative, centromere-specific, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18970 retrotransposon protein, putative, unclassified FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18980 retrotransposon, putative, centromere-specific FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g18990 receptor kinase 2, putative, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19030 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19040 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19050 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19064 retrotransposon protein, putative, Ty1-copia subclass FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19090 retrotransposon, putative, centromere-specific FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19100 expressed protein FN2230-S Chr10 9032001 9732000 0 0 Deletion 699999 LOC_Os10g19110 cytochrome P450, putative, expressed FN2230-S Chr11 17544127 Chr3 3280518 0 Translocation 0 FN2230-S Chr11 18668756 T-A 0 0 Single Base Substitution 0 HET FN2230-S Chr11 26648068 A-G 0 0 Single Base Substitution 0 HET FN2230-S Chr11 6187588 6187598 0 0 Deletion 10 Homo FN2230-S Chr11 8205422 8205426 0 0 Deletion 4 frameshift_variant Homo LOC_Os11g14580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2230-S Chr11 8687148 8687158 0 0 Deletion 10 Homo FN2230-S Chr12 10095847 A-G 0 0 Single Base Substitution 0 HET FN2230-S Chr12 14279009 G-A 0 0 Single Base Substitution 0 HET FN2230-S Chr12 14925114 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g25734 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2230-S Chr12 15372897 C-T 0 0 Single Base Substitution 0 HET FN2230-S Chr12 7131001 7167000 0 0 Deletion 35999 LOC_Os12g12880 expressed protein FN2230-S Chr12 7131001 7167000 0 0 Deletion 35999 LOC_Os12g12900 hypothetical protein FN2230-S Chr12 7131001 7167000 0 0 Deletion 35999 LOC_Os12g12910 retrotransposon protein, putative, unclassified, expressed FN2230-S Chr12 7131001 7167000 0 0 Deletion 35999 LOC_Os12g12920 hypothetical protein FN2230-S Chr12 7131001 7167000 0 0 Deletion 35999 LOC_Os12g12934 peptide transporter PTR3-A, putative, expressed FN2230-S Chr2 13367820 13367838 0 0 Deletion 18 Homo FN2230-S Chr2 13434314 13434315 0 0 Deletion 1 Homo FN2230-S Chr2 28251113 28251131 0 0 Deletion 18 HET FN2230-S Chr2 4724670 G-T 0 0 Single Base Substitution 0 HET FN2230-S Chr2 4724689 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g09200 cytochrome P450 71D10, putative, expressed FN2230-S Chr2 7555937 7555938 0 0 Deletion 1 HET FN2230-S Chr3 16772448 A-T 0 0 Single Base Substitution 0 HET FN2230-S Chr3 19398882 T-C 0 0 Single Base Substitution 0 HET FN2230-S Chr3 22052176 Chr2 7712832 0 Translocation 0 LOC_Os02g14120 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed FN2230-S Chr3 22052176 Chr2 7712832 0 Translocation 0 LOC_Os03g39650 cytochrome P450, putative, expressed FN2230-S Chr3 22062292 Chr2 7712823 0 Translocation 0 FN2230-S Chr3 22062292 Chr2 7712823 0 Translocation 0 LOC_Os02g14120 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed FN2230-S Chr3 23123639 G-A 0 0 Single Base Substitution 0 Homo FN2230-S Chr3 27413805 A-T 0 0 Single Base Substitution 0 STOP_LOST Homo LOC_Os03g48180 peptide transporter PTR2, putative, expressed FN2230-S Chr3 27413806 C-T 0 0 Single Base Substitution 0 Homo FN2230-S Chr3 28043010 G-A 0 0 Single Base Substitution 0 Homo FN2230-S Chr3 33025283 G-C 0 0 Single Base Substitution 0 Homo FN2230-S Chr3 36075037 36075064 0 0 Deletion 27 disruptive_inframe_deletion Homo LOC_Os03g63860 DANA2, putative, expressed FN2230-S Chr3 36307563 G-A 0 0 Single Base Substitution 0 HET FN2230-S Chr4 12080600 Chr3 13772551 0 Translocation 0 FN2230-S Chr4 12080603 Chr3 13772404 0 Translocation 0 FN2230-S Chr4 18925985 A-T 0 0 Single Base Substitution 0 HET FN2230-S Chr4 21226311 A-C 0 0 Single Base Substitution 0 HET FN2230-S Chr4 21995153 C-A 0 0 Single Base Substitution 0 HET FN2230-S Chr4 26418614 26418615 0 0 Deletion 1 HET FN2230-S Chr4 2851889 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g05610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2230-S Chr4 4211798 G-A 0 0 Single Base Substitution 0 HET FN2230-S Chr5 23981339 23981343 0 0 Deletion 4 HET FN2230-S Chr5 3462688 C-T 0 0 Single Base Substitution 0 HET FN2230-S Chr5 4726749 4726750 0 0 Deletion 1 HET FN2230-S Chr5 8850798 T-A 0 0 Single Base Substitution 0 Homo FN2230-S Chr6 19745375 19745376 0 0 Deletion 1 Homo FN2230-S Chr6 27795046 T-C 0 0 Single Base Substitution 0 Homo FN2230-S Chr6 4171163 A-G 0 0 Single Base Substitution 0 HET FN2230-S Chr7 11942961 G-A 0 0 Single Base Substitution 0 HET FN2230-S Chr7 15308391 15308393 0 0 Deletion 2 HET FN2230-S Chr7 9033061 9033065 0 0 Deletion 4 HET FN2230-S Chr8 11836200 11836201 0 0 Deletion 1 HET FN2230-S Chr8 12324413 C-T 0 0 Single Base Substitution 0 Homo FN2230-S Chr8 19809093 Chr7 13487004 0 Translocation 0 FN2230-S Chr8 21271294 A-G 0 0 Single Base Substitution 0 HET FN2230-S Chr8 23136812 23136813 0 0 Deletion 1 HET FN2230-S Chr8 6405349 6405351 0 0 Deletion 2 HET FN2230-S Chr8 8046584 A-T 0 0 Single Base Substitution 0 HET FN2230-S Chr9 14982656 A-C 0 0 Single Base Substitution 0 HET FN2230-S Chr9 15172325 Chr7 6719629 0 Translocation 0 FN2230-S Chr9 15412551 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g25650 GEX2, putative, expressed FN2230-S Chr9 15669642 Chr7 6717273 0 Translocation 0 FN2230-S Chr9 15669931 C-T 0 0 Single Base Substitution 0 HET FN2230-S Chr9 15669932 C-T 0 0 Single Base Substitution 0 HET FN2230-S Chr9 3361432 3361439 0 0 Insertion 7 Homo FN2230-S Chr9 4337283 4337295 0 0 Deletion 12 HET