FN2240-S Chr1 16503949 G-T 0 0 Single Base Substitution 0 HET FN2240-S Chr1 20010086 20010087 0 0 Deletion 1 HET FN2240-S Chr1 2507302 2507304 0 0 Deletion 2 frameshift_variant HET LOC_Os01g05320 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2240-S Chr1 27220555 G-A 0 0 Single Base Substitution 0 HET FN2240-S Chr1 35109119 G-C 0 0 Single Base Substitution 0 HET FN2240-S Chr1 6648054 T-C 0 0 Single Base Substitution 0 Homo FN2240-S Chr1 9913280 9913285 0 0 Deletion 5 HET FN2240-S Chr10 16443073 G-A 0 0 Single Base Substitution 0 HET FN2240-S Chr10 20151391 T-C 0 0 Single Base Substitution 0 HET FN2240-S Chr10 236261 C-A 0 0 Single Base Substitution 0 Homo FN2240-S Chr10 9255123 9255124 0 0 Deletion 1 Homo FN2240-S Chr11 17194333 17194335 0 0 Deletion 2 Homo FN2240-S Chr11 2450599 A-T 0 0 Single Base Substitution 0 HET FN2240-S Chr11 2450602 C-G 0 0 Single Base Substitution 0 HET FN2240-S Chr11 4502531 C-G 0 0 Single Base Substitution 0 HET FN2240-S Chr12 13030660 A-C 0 0 Single Base Substitution 0 HET FN2240-S Chr12 13509693 T-C 0 0 Single Base Substitution 0 HET FN2240-S Chr12 16959525 Chr8 9984393 0 Translocation 0 FN2240-S Chr12 16959525 Chr8 9984393 0 Translocation 0 LOC_Os08g16359 expressed protein FN2240-S Chr12 18896636 T-A 0 0 Single Base Substitution 0 HET FN2240-S Chr12 22197572 G-A 0 0 Single Base Substitution 0 HET FN2240-S Chr12 22269512 C-A 0 0 Single Base Substitution 0 Homo FN2240-S Chr12 3909015 3909017 0 0 Deletion 2 Homo FN2240-S Chr12 5179131 Chr8 15024737 0 Translocation 0 FN2240-S Chr12 8043001 8058000 0 0 Deletion 14999 LOC_Os12g14170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2240-S Chr12 8043001 8058000 0 0 Deletion 14999 LOC_Os12g14180 transposon protein, putative, CACTA, En/Spm sub-class FN2240-S Chr12 8054590 8702616 0 0 Inversion 0 LOC_Os12g14180 transposon protein, putative, CACTA, En/Spm sub-class FN2240-S Chr12 8566889 Chr10 2106336 0 Translocation 0 FN2240-S Chr12 8665163 8702617 0 0 Inversion 0 FN2240-S Chr2 14570547 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g25090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2240-S Chr2 31065566 31065569 0 0 Deletion 3 Homo FN2240-S Chr2 4775515 4775523 0 0 Deletion 8 Homo FN2240-S Chr3 23671801 C-T 0 0 Single Base Substitution 0 Homo FN2240-S Chr4 12144040 Chr2 8032110 0 Translocation 0 FN2240-S Chr4 14804802 C-T 0 0 Single Base Substitution 0 Homo FN2240-S Chr4 15715312 15715313 0 0 Insertion 1 HET FN2240-S Chr4 18860682 18860691 0 0 Deletion 9 Homo FN2240-S Chr4 22909708 A-T 0 0 Single Base Substitution 0 HET FN2240-S Chr4 29347256 29347257 0 0 Deletion 1 HET FN2240-S Chr4 35405681 35405689 0 0 Deletion 8 HET FN2240-S Chr6 11894982 C-T 0 0 Single Base Substitution 0 HET FN2240-S Chr6 11929943 A-T 0 0 Single Base Substitution 0 START_LOST HET LOC_Os06g20710 retrotransposon protein, putative, unclassified, expressed FN2240-S Chr6 12616423 G-A 0 0 Single Base Substitution 0 HET FN2240-S Chr6 25475795 G-A 0 0 Single Base Substitution 0 HET FN2240-S Chr6 27369056 C-T 0 0 Single Base Substitution 0 HET FN2240-S Chr6 27369057 G-T 0 0 Single Base Substitution 0 HET FN2240-S Chr6 3408751 3408755 0 0 Deletion 4 frameshift_variant Homo LOC_Os06g07130 SHR5-receptor-like kinase, putative, expressed FN2240-S Chr6 7018001 7062000 0 0 Deletion 43999 LOC_Os06g12830 expressed protein FN2240-S Chr6 7018001 7062000 0 0 Deletion 43999 LOC_Os06g12840 expressed protein FN2240-S Chr6 7018001 7062000 0 0 Deletion 43999 LOC_Os06g12850 expressed protein FN2240-S Chr6 7018001 7062000 0 0 Deletion 43999 LOC_Os06g12860 proteins of unknown function domain containing protein, putative, expressed FN2240-S Chr6 7018001 7062000 0 0 Deletion 43999 LOC_Os06g12870 leaf senescence related protein, putative, expressed FN2240-S Chr6 7018001 7062000 0 0 Deletion 43999 LOC_Os06g12876 expressed protein FN2240-S Chr6 7018001 7062000 0 0 Deletion 43999 LOC_Os06g12882 S phase cyclin A-associated protein in the ER, putative, expressed FN2240-S Chr6 7018001 7062000 0 0 Deletion 43999 LOC_Os06g12890 expressed protein FN2240-S Chr6 7018001 7062000 0 0 Deletion 43999 LOC_Os06g12900 transposon protein, putative, unclassified, expressed FN2240-S Chr6 7136858 7136870 0 0 Deletion 12 disruptive_inframe_deletion Homo LOC_Os06g13030 OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed FN2240-S Chr7 24195456 C-T 0 0 Single Base Substitution 0 HET FN2240-S Chr7 5710030 A-T 0 0 Single Base Substitution 0 HET FN2240-S Chr7 5710031 A-T 0 0 Single Base Substitution 0 HET FN2240-S Chr7 6694687 A-G 0 0 Single Base Substitution 0 HET FN2240-S Chr7 9604616 Chr3 25732270 0 Translocation 0 FN2240-S Chr8 10507575 C-T 0 0 Single Base Substitution 0 HET FN2240-S Chr8 18909361 G-A 0 0 Single Base Substitution 0 Homo FN2240-S Chr8 7282394 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g12360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13040 hypothetical protein FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13050 hypothetical protein FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13060 MBTB22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13070 MBTB23 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13080 retrotransposon protein, putative, unclassified, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13090 BTB/POZ domain containing protein, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13100 expressed protein FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13110 hypothetical protein FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13120 retrotransposon protein, putative, unclassified FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13130 expressed protein FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13140 hypothetical protein FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13160 hypothetical protein FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13170 retrotransposon protein, putative, unclassified, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13180 MBTB24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13190 retrotransposon protein, putative, unclassified, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13200 retrotransposon protein, putative, unclassified, expressed FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13210 expressed protein FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13219 expressed protein FN2240-S Chr8 7742001 7865000 0 0 Deletion 122999 LOC_Os08g13230 expressed protein FN2240-S Chr8 7928001 7975000 0 0 Deletion 46999 LOC_Os08g13340 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2240-S Chr8 7928001 7975000 0 0 Deletion 46999 LOC_Os08g13350 expressed protein FN2240-S Chr8 7928001 7975000 0 0 Deletion 46999 LOC_Os08g13360 kelch repeat protein, putative, expressed FN2240-S Chr8 7928001 7975000 0 0 Deletion 46999 LOC_Os08g13380 expressed protein FN2240-S Chr8 7928001 7975000 0 0 Deletion 46999 LOC_Os08g13390 expressed protein FN2240-S Chr8 7928001 7975000 0 0 Deletion 46999 LOC_Os08g13400 expressed protein FN2240-S Chr9 4630570 4630694 0 0 Deletion 124 HET