FN2260-S Chr1 12684453 12684475 0 0 Insertion 22 HET FN2260-S Chr1 20132441 20132444 0 0 Deletion 3 Homo FN2260-S Chr1 26049036 T-A 0 0 Single Base Substitution 0 HET FN2260-S Chr1 31449024 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g54660 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr1 31467431 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g54690 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr1 3184918 3184932 0 0 Deletion 14 frameshift_variant Homo LOC_Os01g06730 verticillium wilt disease resistance protein, putative, expressed FN2260-S Chr1 36511307 G-A 0 0 Single Base Substitution 0 HET FN2260-S Chr1 9408457 C-T 0 0 Single Base Substitution 0 Homo FN2260-S Chr10 11195667 A-G 0 0 Single Base Substitution 0 HET FN2260-S Chr10 11342721 C-T 0 0 Single Base Substitution 0 Homo FN2260-S Chr10 3900500 A-G 0 0 Single Base Substitution 0 HET FN2260-S Chr11 13724844 T-C 0 0 Single Base Substitution 0 HET FN2260-S Chr11 18629334 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr11 20176678 A-T 0 0 Single Base Substitution 0 HET FN2260-S Chr11 20493593 20493599 0 0 Deletion 6 HET FN2260-S Chr11 23268238 23268239 0 0 Deletion 1 HET FN2260-S Chr11 2398257 T-A 0 0 Single Base Substitution 0 HET FN2260-S Chr11 8386395 G-T 0 0 Single Base Substitution 0 HET FN2260-S Chr11 8422277 C-A 0 0 Single Base Substitution 0 HET FN2260-S Chr11 8869768 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g15630 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr11 9071573 C-G 0 0 Single Base Substitution 0 HET FN2260-S Chr12 11405657 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr12 18351025 Chr4 29013509 0 Translocation 0 FN2260-S Chr12 18351025 Chr4 29013509 0 Translocation 0 LOC_Os04g48660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr12 21690835 T-A 0 0 Single Base Substitution 0 HET FN2260-S Chr12 26277750 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr12 3947667 C-G 0 0 Single Base Substitution 0 HET FN2260-S Chr12 5401895 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g10230 expressed protein FN2260-S Chr12 7372084 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr2 11228268 T-C 0 0 Single Base Substitution 0 HET FN2260-S Chr2 15545589 15545590 0 0 Insertion 1 HET FN2260-S Chr2 27758451 G-A 0 0 Single Base Substitution 0 HET FN2260-S Chr2 33033902 33192681 0 0 Inversion 0 FN2260-S Chr2 33033902 33192681 0 0 Inversion 0 LOC_Os02g54150 SAC domain containing protein, putative, expressed FN2260-S Chr2 33033904 33192688 0 0 Inversion 0 FN2260-S Chr2 33033904 33192688 0 0 Inversion 0 LOC_Os02g54150 SAC domain containing protein, putative, expressed FN2260-S Chr2 5296900 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr3 12728966 G-A 0 0 Single Base Substitution 0 HET FN2260-S Chr3 16755893 C-T 0 0 Single Base Substitution 0 Homo FN2260-S Chr3 1686206 1686209 0 0 Deletion 3 HET FN2260-S Chr3 17790813 17790814 0 0 Deletion 1 HET FN2260-S Chr3 23487007 G-A 0 0 Single Base Substitution 0 HET FN2260-S Chr3 30334314 30334317 0 0 Insertion 3 HET FN2260-S Chr3 5490724 A-G 0 0 Single Base Substitution 0 HET FN2260-S Chr3 8075410 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr4 17155976 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g28940 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr4 23764488 23764490 0 0 Deletion 2 HET FN2260-S Chr4 25215301 C-G 0 0 Single Base Substitution 0 HET FN2260-S Chr4 25869607 25869611 0 0 Deletion 4 HET FN2260-S Chr4 25891328 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr4 25891329 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr4 9935639 9935640 0 0 Insertion 1 Homo FN2260-S Chr5 10120001 10190000 0 0 Deletion 69999 LOC_Os05g17604 SHR5-receptor-like kinase, putative, expressed FN2260-S Chr5 10120001 10190000 0 0 Deletion 69999 LOC_Os05g17630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr5 10120001 10190000 0 0 Deletion 69999 LOC_Os05g17640 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10120001 10190000 0 0 Deletion 69999 LOC_Os05g17650 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10120001 10190000 0 0 Deletion 69999 LOC_Os05g17670 retrotransposon protein, putative, Ty1-copia subclass FN2260-S Chr5 10120001 10190000 0 0 Deletion 69999 LOC_Os05g17680 conserved hypothetical protein FN2260-S Chr5 10120001 10190000 0 0 Deletion 69999 LOC_Os05g17690 expressed protein FN2260-S Chr5 10120001 10190000 0 0 Deletion 69999 LOC_Os05g17700 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10120001 10190000 0 0 Deletion 69999 LOC_Os05g17710 hypothetical protein FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17720 retrotransposon protein, putative, unclassified FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17730 expressed protein FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17740 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17750 retrotransposon protein, putative, Ty1-copia subclass FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17760 retrotransposon protein, putative, Ty3-gypsy subclass FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17790 retrotransposon protein, putative, Ty3-gypsy subclass FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17800 SHR5-receptor-like kinase, putative, expressed FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17810 SHR5-receptor-like kinase, putative, expressed FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17820 retrotransposon protein, putative, Ty3-gypsy subclass FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17830 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10193001 10266000 0 0 Deletion 72999 LOC_Os05g17840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17849 expressed protein FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17860 retrotransposon protein, putative, unclassified FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17870 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17880 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17890 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17900 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17920 retrotransposon protein, putative, unclassified FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17930 retrotransposon protein, putative, unclassified FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17940 retrotransposon protein, putative, unclassified FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17950 retrotransposon protein, putative, unclassified FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17970 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17980 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g17990 expressed protein FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18000 retrotransposon protein, putative, LINE subclass, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18020 retrotransposon protein, putative, unclassified FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18030 retrotransposon protein, putative, unclassified FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18050 retrotransposon protein, putative, unclassified FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18060 retrotransposon protein, putative, unclassified FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18080 retrotransposon protein, putative, Ty3-gypsy subclass FN2260-S Chr5 10269001 10405000 0 0 Deletion 135999 LOC_Os05g18090 SHR5-receptor-like kinase, putative, expressed FN2260-S Chr5 1357623 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr5 18856384 T-A 0 0 Single Base Substitution 0 HET FN2260-S Chr5 21655986 T-C 0 0 Single Base Substitution 0 HET FN2260-S Chr6 11268941 11268943 0 0 Deletion 2 HET FN2260-S Chr6 14069412 14069415 0 0 Deletion 3 HET FN2260-S Chr6 15196141 C-A 0 0 Single Base Substitution 0 HET FN2260-S Chr6 20156686 G-T 0 0 Single Base Substitution 0 Homo FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g35960 HSF-type DNA-binding domain containing protein, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g35970 meiosis 5, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g35980 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g35990 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36000 AP2 domain containing protein, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36010 plastocyanin-like domain containing protein, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36020 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36030 SWIM zinc finger family protein, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36040 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36050 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36060 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36070 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36080 kinesin motor domain containing protein, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36090 ABC-2 type transporter, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36120 retrotransposon protein, putative, Ty3-gypsy subclass FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36130 retrotransposon protein, putative, unclassified FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36140 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36150 retrotransposon, putative, centromere-specific, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36160 40S ribosomal protein S24, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36170 initiator tRNA phosphoribosyl transferase family protein, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36180 amino acid transporter, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36210 amino acid transporter, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36220 OsFBX198 - F-box domain containing protein, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36230 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36240 POEI21 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36250 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36260 hypothetical protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36270 receptor-like protein kinase 5 precursor, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36280 retrotransposon protein, putative, Ty1-copia subclass FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36290 retrotransposon protein, putative, Ty1-copia subclass FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36310 receptor-like protein kinase 5 precursor, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36320 receptor-like protein kinase 5 precursor, putative, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36330 MATE domain containing protein, expressed FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36340 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36360 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36370 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36380 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36390 expressed protein FN2260-S Chr6 20998001 21376000 0 0 Deletion 377999 LOC_Os06g36400 HAD superfamily phosphatase, putative, expressed FN2260-S Chr6 23798706 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr6 25294049 G-A 0 0 Single Base Substitution 0 HET FN2260-S Chr6 29708455 29708457 0 0 Deletion 2 HET FN2260-S Chr6 4971883 4971899 0 0 Deletion 16 HET FN2260-S Chr6 5543356 5543359 0 0 Insertion 3 HET FN2260-S Chr6 7461329 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g13520 SAM dependent carboxyl methyltransferase domain containing protein, expressed FN2260-S Chr6 7563351 G-A 0 0 Single Base Substitution 0 HET FN2260-S Chr6 7911870 7911878 0 0 Deletion 8 HET FN2260-S Chr7 10868575 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g18340 retrotransposon protein, putative, Ty3-gypsy subclass FN2260-S Chr7 21475823 T-C 0 0 Single Base Substitution 0 HET FN2260-S Chr7 22523945 A-C 0 0 Single Base Substitution 0 HET FN2260-S Chr7 227942 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr7 23287578 C-T 0 0 Single Base Substitution 0 Homo FN2260-S Chr7 2552500 C-G 0 0 Single Base Substitution 0 HET FN2260-S Chr7 6424672 6424687 0 0 Deletion 15 HET FN2260-S Chr7 9521498 C-A 0 0 Single Base Substitution 0 Homo FN2260-S Chr8 12827599 G-A 0 0 Single Base Substitution 0 HET FN2260-S Chr8 16821797 16821801 0 0 Deletion 4 frameshift_variant Homo LOC_Os08g27590 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr8 20312105 C-T 0 0 Single Base Substitution 0 Homo FN2260-S Chr8 24619740 24619743 0 0 Deletion 3 HET FN2260-S Chr8 26313995 T-C 0 0 Single Base Substitution 0 HET FN2260-S Chr8 6696487 C-A 0 0 Single Base Substitution 0 Homo FN2260-S Chr8 6825370 C-A 0 0 Single Base Substitution 0 HET FN2260-S Chr8 6825371 C-A 0 0 Single Base Substitution 0 HET FN2260-S Chr8 7275862 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g12350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g29950 OsPOP19 - Putative Prolyl Oligopeptidase homologue, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g29960 dof zinc finger domain containing protein, putative, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g29970 TMV-MP30 binding protein 2C, putative, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g29980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g29990 skin secretory protein xP2 precursor, putative, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30000 expressed protein FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30010 fasciclin domain containing protein, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30020 retrotransposon protein, putative, unclassified, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30030 expressed protein FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30040 expressed protein FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30050 expressed protein FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30060 expressed protein FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30070 expressed protein FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30090 WD domain, G-beta repeat domain containing protein, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30100 NOL1/NOP2/sun family protein, putative, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30105 expressed protein FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30120 CSLE1 - cellulose synthase-like family E, expressed FN2260-S Chr9 18225001 18319000 0 0 Deletion 93999 LOC_Os09g30130 CSLE6 - cellulose synthase-like family E, expressed FN2260-S Chr9 18618317 C-T 0 0 Single Base Substitution 0 HET FN2260-S Chr9 21145055 21145057 0 0 Deletion 2 HET