FN2274-S Chr1 14308741 T-C 0 0 Single Base Substitution 0 HET FN2274-S Chr1 27157074 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g47510 retrotransposon protein, putative, unclassified, expressed FN2274-S Chr1 29595676 30461571 0 0 Inversion 0 FN2274-S Chr1 29595676 30461571 0 0 Inversion 0 LOC_Os01g53000 trehalose synthase, putative, expressed FN2274-S Chr1 29596001 29605000 0 0 Deletion 8999 LOC_Os01g51520 expressed protein FN2274-S Chr1 29596001 29605000 0 0 Deletion 8999 LOC_Os01g51530 methyltransferase domain containing protein, expressed FN2274-S Chr1 29604731 30461578 0 0 Inversion 0 FN2274-S Chr1 29604731 30461578 0 0 Inversion 0 LOC_Os01g53000 trehalose synthase, putative, expressed FN2274-S Chr1 34072195 G-A 0 0 Single Base Substitution 0 HET FN2274-S Chr1 35076680 G-A 0 0 Single Base Substitution 0 HET FN2274-S Chr1 40685653 T-A 0 0 Single Base Substitution 0 Homo FN2274-S Chr1 41568831 G-T 0 0 Single Base Substitution 0 HET FN2274-S Chr1 41728049 G-A 0 0 Single Base Substitution 0 HET FN2274-S Chr1 42137413 42137418 0 0 Deletion 5 HET FN2274-S Chr1 42166637 42166639 0 0 Deletion 2 HET FN2274-S Chr1 4448250 4448254 0 0 Deletion 4 HET FN2274-S Chr1 9716014 C-G 0 0 Single Base Substitution 0 HET FN2274-S Chr10 11458867 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g22164 transposon protein, putative, unclassified, expressed FN2274-S Chr10 14962123 14962125 0 0 Deletion 2 frameshift_variant Homo LOC_Os10g28680 DUF581 domain containing protein, expressed FN2274-S Chr10 16709703 16709747 0 0 Deletion 44 Homo FN2274-S Chr10 17421836 T-C 0 0 Single Base Substitution 0 HET FN2274-S Chr10 17769049 A-G 0 0 Single Base Substitution 0 HET FN2274-S Chr10 17769196 T-G 0 0 Single Base Substitution 0 HET FN2274-S Chr10 2161262 2161265 0 0 Deletion 3 HET FN2274-S Chr10 5486005 T-A 0 0 Single Base Substitution 0 Homo FN2274-S Chr10 5627772 G-A 0 0 Single Base Substitution 0 HET FN2274-S Chr10 9625833 9625835 0 0 Deletion 2 HET FN2274-S Chr11 20370010 T-A 0 0 Single Base Substitution 0 Homo FN2274-S Chr11 24168436 24168441 0 0 Deletion 5 HET FN2274-S Chr11 728626 Chr2 13225538 0 Translocation 0 FN2274-S Chr11 728626 Chr2 13225538 0 Translocation 0 LOC_Os02g22190 glycosyltransferase, putative, expressed FN2274-S Chr12 14668462 C-T 0 0 Single Base Substitution 0 HET FN2274-S Chr12 2270893 G-A 0 0 Single Base Substitution 0 HET FN2274-S Chr12 24587182 Chr6 19795359 0 Translocation 0 LOC_Os06g33990 expressed protein FN2274-S Chr12 24587182 Chr6 19795359 0 Translocation 0 LOC_Os12g39800 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2274-S Chr12 47560 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g01090 retrotransposon protein, putative, unclassified, expressed FN2274-S Chr12 506079 C-T 0 0 Single Base Substitution 0 HET FN2274-S Chr12 7789171 C-T 0 0 Single Base Substitution 0 HET FN2274-S Chr2 11736824 A-G 0 0 Single Base Substitution 0 HET FN2274-S Chr2 17198258 A-T 0 0 Single Base Substitution 0 HET FN2274-S Chr2 23147050 C-T 0 0 Single Base Substitution 0 HET FN2274-S Chr2 26774530 26774535 0 0 Deletion 5 HET FN2274-S Chr2 27832725 G-A 0 0 Single Base Substitution 0 HET FN2274-S Chr2 28701309 28995921 0 0 Inversion 0 FN2274-S Chr2 28701309 28995921 0 0 Inversion 0 LOC_Os02g47470 cytochrome P450, putative, expressed FN2274-S Chr2 28995922 29348217 0 0 Inversion 0 LOC_Os02g47470 cytochrome P450, putative, expressed FN2274-S Chr2 28995922 29348217 0 0 Inversion 0 LOC_Os02g47970 calpain, putative, expressed FN2274-S Chr2 34569832 G-A 0 0 Single Base Substitution 0 Homo FN2274-S Chr2 5825965 A-G 0 0 Single Base Substitution 0 HET FN2274-S Chr2 6824165 6824167 0 0 Deletion 2 Homo FN2274-S Chr3 11041306 11041310 0 0 Deletion 4 HET FN2274-S Chr3 12272208 12272209 0 0 Deletion 1 HET FN2274-S Chr3 13841597 13841606 0 0 Deletion 9 splice_donor_variant&splice_region_variant&3_prime_UTR_variant&intron_variant HET LOC_Os03g24339 PWWP domain containing protein, expressed FN2274-S Chr3 20543498 20543508 0 0 Deletion 10 HET FN2274-S Chr3 25277321 C-A 0 0 Single Base Substitution 0 HET FN2274-S Chr3 25277322 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g44820 glutamyl-tRNA, putative, expressed FN2274-S Chr3 4417197 T-C 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR Homo LOC_Os03g08580 expressed protein FN2274-S Chr3 8439732 T-C 0 0 Single Base Substitution 0 HET FN2274-S Chr3 9357165 G-A 0 0 Single Base Substitution 0 Homo FN2274-S Chr4 15346902 G-C 0 0 Single Base Substitution 0 HET FN2274-S Chr4 1538725 C-T 0 0 Single Base Substitution 0 Homo FN2274-S Chr4 15548564 T-A 0 0 Single Base Substitution 0 HET FN2274-S Chr4 15866142 15866143 0 0 Deletion 1 HET FN2274-S Chr4 7676544 C-T 0 0 Single Base Substitution 0 HET FN2274-S Chr5 21064383 A-G 0 0 Single Base Substitution 0 HET FN2274-S Chr5 2253871 2253881 0 0 Deletion 10 frameshift_variant Homo LOC_Os05g04760 expressed protein FN2274-S Chr5 28255715 G-C 0 0 Single Base Substitution 0 HET FN2274-S Chr5 5598503 C-T 0 0 Single Base Substitution 0 HET FN2274-S Chr5 7862297 A-T 0 0 Single Base Substitution 0 Homo FN2274-S Chr6 10213883 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g17600 cadmium tolerance factor, putative, expressed FN2274-S Chr6 10213884 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g17600 cadmium tolerance factor, putative, expressed FN2274-S Chr6 11367176 G-C 0 0 Single Base Substitution 0 Homo FN2274-S Chr6 21695000 21695001 0 0 Deletion 1 HET FN2274-S Chr6 23825898 G-A 0 0 Single Base Substitution 0 HET FN2274-S Chr6 25465865 25465887 0 0 Deletion 22 Homo FN2274-S Chr6 30141157 30141166 0 0 Deletion 9 Homo FN2274-S Chr7 10402257 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g17610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2274-S Chr7 10413177 G-T 0 0 Single Base Substitution 0 HET FN2274-S Chr7 17571023 A-T 0 0 Single Base Substitution 0 HET FN2274-S Chr8 13109746 T-C 0 0 Single Base Substitution 0 HET FN2274-S Chr8 14911077 G-A 0 0 Single Base Substitution 0 HET FN2274-S Chr8 17546054 17546056 0 0 Insertion 2 HET FN2274-S Chr8 20901584 G-A 0 0 Single Base Substitution 0 HET FN2274-S Chr8 2818922 2818924 0 0 Deletion 2 Homo FN2274-S Chr8 3463065 Chr7 16953256 0 Translocation 0 LOC_Os07g28910 LSD1 zinc finger domain containing protein, expressed FN2274-S Chr8 3463065 Chr7 16953256 0 Translocation 0 LOC_Os08g06280 LSD1 zinc finger domain containing protein, expressed FN2274-S Chr8 3701036 A-T 0 0 Single Base Substitution 0 Homo FN2274-S Chr8 4016292 4016302 0 0 Deletion 10 HET FN2274-S Chr8 4480183 4480187 0 0 Deletion 4 HET FN2274-S Chr8 5130577 5130579 0 0 Insertion 2 HET FN2274-S Chr9 1487284 1487285 0 0 Deletion 1 HET FN2274-S Chr9 15433984 A-G 0 0 Single Base Substitution 0 HET FN2274-S Chr9 21930722 22261288 0 0 Inversion 0 FN2274-S Chr9 21930722 22261288 0 0 Inversion 0 LOC_Os09g38730 26S protease regulatory subunit 6B, putative, expressed FN2274-S Chr9 3409287 3409289 0 0 Deletion 2 HET