FN2275-S Chr1 10418465 10418466 0 0 Insertion 1 frameshift_variant HET LOC_Os01g18520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr1 10882620 10882623 0 0 Insertion 3 HET FN2275-S Chr1 2557267 T-C 0 0 Single Base Substitution 0 HET FN2275-S Chr1 30298001 30330000 0 0 Deletion 31999 LOC_Os01g52700 expressed protein FN2275-S Chr1 30298001 30330000 0 0 Deletion 31999 LOC_Os01g52710 glycosyl transferase 8 domain containing protein, putative, expressed FN2275-S Chr1 30298001 30330000 0 0 Deletion 31999 LOC_Os01g52720 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed FN2275-S Chr1 30298001 30330000 0 0 Deletion 31999 LOC_Os01g52730 DUF584 domain containing protein, putative, expressed FN2275-S Chr1 38331001 38367000 0 0 Deletion 35999 LOC_Os01g66050 wound-responsive family protein, putative, expressed FN2275-S Chr1 38331001 38367000 0 0 Deletion 35999 LOC_Os01g66060 expressed protein FN2275-S Chr1 38331001 38367000 0 0 Deletion 35999 LOC_Os01g66070 PHD-finger domain containing protein, putative FN2275-S Chr1 38331001 38367000 0 0 Deletion 35999 LOC_Os01g66080 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr1 38331001 38367000 0 0 Deletion 35999 LOC_Os01g66090 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr1 39023200 39023206 0 0 Deletion 6 HET FN2275-S Chr1 41689716 41689719 0 0 Deletion 3 HET FN2275-S Chr10 16849900 C-T 0 0 Single Base Substitution 0 HET FN2275-S Chr10 17747083 17747089 0 0 Deletion 6 HET FN2275-S Chr10 19807880 G-T 0 0 Single Base Substitution 0 HET FN2275-S Chr10 20202591 20202593 0 0 Insertion 2 HET FN2275-S Chr10 5832710 5832711 0 0 Deletion 1 HET FN2275-S Chr10 6082314 A-T 0 0 Single Base Substitution 0 HET FN2275-S Chr10 6176012 G-T 0 0 Single Base Substitution 0 HET FN2275-S Chr10 6615820 6615823 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os10g11920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr10 8391705 A-T 0 0 Single Base Substitution 0 HET FN2275-S Chr10 859946 859947 0 0 Deletion 1 HET FN2275-S Chr10 8962001 8995000 0 0 Deletion 32999 LOC_Os10g17724 retrotransposon, putative, centromere-specific, expressed FN2275-S Chr10 8962001 8995000 0 0 Deletion 32999 LOC_Os10g17740 ZOS10-02 - C2H2 zinc finger protein, expressed FN2275-S Chr10 8962001 8995000 0 0 Deletion 32999 LOC_Os10g17750 expressed protein FN2275-S Chr10 8962001 8995000 0 0 Deletion 32999 LOC_Os10g17770 chromo domain-containing protein LHP1, putative, expressed FN2275-S Chr10 8992716 9169360 0 0 Inversion 0 LOC_Os10g17770 chromo domain-containing protein LHP1, putative, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g17940 OsFBX382 - F-box domain containing protein, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g17950 TKL_IRAK_DUF26-lc.5 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g17960 TKL_IRAK_DUF26-lc.26 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g17970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g17980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g17990 phosphatidate cytidylyltransferase, putative, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g18010 expressed protein FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g18026 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g18042 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g18060 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g18070 expressed protein FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g18080 expressed protein FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g18084 expressed protein FN2275-S Chr10 9071001 9172000 0 0 Deletion 100999 LOC_Os10g18090 expressed protein FN2275-S Chr10 9539422 G-A 0 0 Single Base Substitution 0 HET FN2275-S Chr10 9679536 T-A 0 0 Single Base Substitution 0 HET FN2275-S Chr11 11644498 T-A 0 0 Single Base Substitution 0 HET FN2275-S Chr11 14261627 G-A 0 0 Single Base Substitution 0 HET FN2275-S Chr11 15784490 15784491 0 0 Deletion 1 HET FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37120 nucleolar protein 5, putative, expressed FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37130 mttA/Hcf106 family protein, putative, expressed FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37140 expressed protein FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37160 expressed protein FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37190 allergen-related, putative, expressed FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37200 transmembrane BAX inhibitor motif-containing protein, putative, expressed FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37210 MTN26L5 - MtN26 family protein precursor, expressed FN2275-S Chr11 21915001 21993000 0 0 Deletion 77999 LOC_Os11g37230 zinc finger, C3HC4 type domain containing protein, expressed FN2275-S Chr11 24292964 24292966 0 0 Deletion 2 HET FN2275-S Chr11 25183222 25183224 0 0 Deletion 2 HET FN2275-S Chr11 3937732 G-A 0 0 Single Base Substitution 0 HET FN2275-S Chr11 5821433 G-A 0 0 Single Base Substitution 0 Homo FN2275-S Chr11 9368836 9368839 0 0 Insertion 3 HET FN2275-S Chr12 10800352 T-C 0 0 Single Base Substitution 0 HET FN2275-S Chr12 14462355 Chr4 12223961 0 Translocation 0 FN2275-S Chr12 14462355 Chr4 12223961 0 Translocation 0 LOC_Os04g21610 expressed protein FN2275-S Chr12 14462356 Chr4 12222064 0 Translocation 0 FN2275-S Chr12 14462356 Chr4 12222064 0 Translocation 0 LOC_Os04g21610 expressed protein FN2275-S Chr12 16771263 G-C 0 0 Single Base Substitution 0 Homo FN2275-S Chr12 26812100 26812131 0 0 Deletion 31 HET FN2275-S Chr12 8022335 8022350 0 0 Deletion 15 HET FN2275-S Chr12 8699756 8699761 0 0 Deletion 5 HET FN2275-S Chr2 10980386 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g18820 WD domain, G-beta repeat domain containing protein, expressed FN2275-S Chr2 13374001 13398000 0 0 Deletion 23999 LOC_Os02g22390 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr2 13374001 13398000 0 0 Deletion 23999 LOC_Os02g22400 retrotransposon protein, putative, unclassified FN2275-S Chr2 13374001 13398000 0 0 Deletion 23999 LOC_Os02g22410 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr2 13374001 13398000 0 0 Deletion 23999 LOC_Os02g22420 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr2 13374001 13398000 0 0 Deletion 23999 LOC_Os02g22430 retrotransposon protein, putative, unclassified FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22440 expressed protein FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22450 expressed protein FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22480 glycosyltransferase, putative, expressed FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22490 retrotransposon protein, putative, Ty3-gypsy subclass FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22510 retrotransposon protein, putative, Ty3-gypsy subclass FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22530 retrotransposon protein, putative, Ty3-gypsy subclass FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22540 retrotransposon protein, putative, unclassified FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22550 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22560 retrotransposon protein, putative, unclassified FN2275-S Chr2 13404001 13461000 0 0 Deletion 56999 LOC_Os02g22570 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr2 15008774 T-A 0 0 Single Base Substitution 0 HET FN2275-S Chr2 15009193 C-A 0 0 Single Base Substitution 0 HET FN2275-S Chr2 15009194 G-A 0 0 Single Base Substitution 0 HET FN2275-S Chr2 15009195 C-T 0 0 Single Base Substitution 0 HET FN2275-S Chr2 2059555 2059557 0 0 Deletion 2 HET FN2275-S Chr2 20960937 20960939 0 0 Insertion 2 HET FN2275-S Chr2 28145108 T-A 0 0 Single Base Substitution 0 Homo FN2275-S Chr2 32293947 32293955 0 0 Deletion 8 HET FN2275-S Chr2 33270300 33270303 0 0 Insertion 3 HET FN2275-S Chr2 33866118 33866120 0 0 Deletion 2 HET FN2275-S Chr2 34686306 G-A 0 0 Single Base Substitution 0 HET FN2275-S Chr2 957683 957686 0 0 Deletion 3 HET FN2275-S Chr3 11982782 A-G 0 0 Single Base Substitution 0 HET FN2275-S Chr3 1508600 G-A 0 0 Single Base Substitution 0 Homo FN2275-S Chr3 19696004 C-T 0 0 Single Base Substitution 0 Homo FN2275-S Chr3 33695951 33695954 0 0 Deletion 3 HET FN2275-S Chr3 7326501 T-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os03g13550 oxidoreductase, putative, expressed FN2275-S Chr4 10313619 G-A 0 0 Single Base Substitution 0 HET FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21320 membrane associated DUF588 domain containing protein, putative, expressed FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21330 hypothetical protein FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21340 expressed protein FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21350 flowering promoting factor-like 1, putative, expressed FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21360 expressed protein FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21370 expressed protein FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21380 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr4 12023001 12104000 0 0 Deletion 80999 LOC_Os04g21410 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2275-S Chr4 12520367 12576935 0 0 Inversion 0 LOC_Os04g22100 BED zinc finger family protein, expressed FN2275-S Chr4 12520367 12576935 0 0 Inversion 0 LOC_Os04g22200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr4 15414853 T-C 0 0 Single Base Substitution 0 HET FN2275-S Chr4 17413893 C-T 0 0 Single Base Substitution 0 HET FN2275-S Chr4 17456279 T-A 0 0 Single Base Substitution 0 HET FN2275-S Chr4 17819989 17819990 0 0 Deletion 1 HET FN2275-S Chr4 18442001 18450000 0 0 Deletion 7999 LOC_Os04g30860 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN2275-S Chr4 18442001 18450000 0 0 Deletion 7999 LOC_Os04g30870 transposon protein, putative, unclassified, expressed FN2275-S Chr4 29336760 T-G 0 0 Single Base Substitution 0 HET FN2275-S Chr5 5769934 C-T 0 0 Single Base Substitution 0 Homo FN2275-S Chr6 15020809 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g25720 transposon protein, putative, CACTA, En/Spm sub-class FN2275-S Chr6 17296350 17296648 0 0 Inversion 0 FN2275-S Chr6 2281446 T-G 0 0 Single Base Substitution 0 HET FN2275-S Chr6 46338 255774 0 0 Inversion 0 LOC_Os06g01060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr6 46338 255774 0 0 Inversion 0 LOC_Os06g01420 retrotransposon protein, putative, unclassified, expressed FN2275-S Chr6 7810371 7810379 0 0 Deletion 8 Homo FN2275-S Chr7 14568224 14568229 0 0 Deletion 5 Homo FN2275-S Chr7 27358506 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g45840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2275-S Chr7 6252890 6252892 0 0 Insertion 2 HET FN2275-S Chr8 11002447 A-T 0 0 Single Base Substitution 0 HET FN2275-S Chr8 11131788 G-A 0 0 Single Base Substitution 0 HET FN2275-S Chr8 12655551 12655554 0 0 Deletion 3 HET FN2275-S Chr8 17574107 17883151 0 0 Inversion 0 LOC_Os08g28730 NAD dependent epimerase/dehydratase family protein, putative, expressed FN2275-S Chr8 17574107 17883151 0 0 Inversion 0 LOC_Os08g29180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2275-S Chr8 18175699 18175703 0 0 Insertion 4 HET FN2275-S Chr8 21973001 21991000 0 0 Deletion 17999 LOC_Os08g34895 expressed protein FN2275-S Chr8 21973001 21991000 0 0 Deletion 17999 LOC_Os08g34900 pectinesterase, putative, expressed FN2275-S Chr8 21973001 21991000 0 0 Deletion 17999 LOC_Os08g34910 pectinesterase, putative, expressed FN2275-S Chr8 21973001 21991000 0 0 Deletion 17999 LOC_Os08g34920 expressed protein FN2275-S Chr8 22054558 22054563 0 0 Deletion 5 frameshift_variant HET LOC_Os08g35010 ARID/BRIGHT DNA-binding domain containing protein, expressed FN2275-S Chr8 23802263 23802264 0 0 Deletion 1 HET FN2275-S Chr8 26226637 26226639 0 0 Deletion 2 HET FN2275-S Chr8 4923838 C-T 0 0 Single Base Substitution 0 HET FN2275-S Chr9 13068656 13068665 0 0 Deletion 9 Homo FN2275-S Chr9 18903572 18903576 0 0 Deletion 4 Homo FN2275-S Chr9 5627103 T-A 0 0 Single Base Substitution 0 HET