FN2309 Chr1 16202539 C-T 0 0 Single Base Substitution 0 HET FN2309 Chr1 17544635 T-A 0 0 Single Base Substitution 0 HET FN2309 Chr1 21315602 C-A 0 0 Single Base Substitution 0 HET FN2309 Chr1 21315604 G-A 0 0 Single Base Substitution 0 HET FN2309 Chr1 21315608 T-A 0 0 Single Base Substitution 0 HET FN2309 Chr1 23572388 A-T 0 0 Single Base Substitution 0 HET FN2309 Chr1 26341942 A-T 0 0 Single Base Substitution 0 HET FN2309 Chr10 10054568 Chr2 23301022 0 Translocation 0 FN2309 Chr10 10202226 Chr8 17046573 0 Translocation 0 FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20290 expressed protein FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20300 expressed protein FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20310 thioredoxin fold, putative, expressed FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20320 transposon protein, putative, CACTA, En/Spm sub-class FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20340 expressed protein FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20350 MATE efflux family protein, putative, expressed FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20370 expressed protein FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20380 uncharacterized transporter C11D3.06, putative, expressed FN2309 Chr10 10203001 10250000 0 0 Deletion 46999 LOC_Os10g20390 MATE efflux family protein, putative, expressed FN2309 Chr10 3923863 3923864 0 0 Insertion 1 HET FN2309 Chr10 8115250 8115251 0 0 Deletion 1 HET FN2309 Chr10 9180137 9180143 0 0 Insertion 6 HET FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19890 retrotransposon protein, putative, LINE subclass, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19892 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19894 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19898 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19902 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19904 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19910 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19912 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19914 hypothetical protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19919 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19925 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19930 retrotransposon protein, putative, unclassified, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19940 retrotransposon protein, putative, unclassified FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19950 retrotransposon protein, putative, unclassified, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19960 beta-galactosidase, putative, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19970 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19980 conserved hypothetical protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g19990 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20000 retrotransposon protein, putative, unclassified, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20010 retrotransposon protein, putative, unclassified FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20040 retrotransposon protein, putative, unclassified, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20050 retrotransposon protein, putative, unclassified FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20060 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20070 transposon protein, putative, unclassified, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20080 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20090 CSLH1 - cellulose synthase-like family H, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20120 serine/threonine-protein kinase receptor precursor, putative, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20139 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20160 serine/threonine-protein kinase receptor precursor, putative, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20170 retrotransposon protein, putative, unclassified, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20180 retrotransposon protein, putative, unclassified, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20200 retrotransposon protein, putative, unclassified FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20210 retrotransposon protein, putative, unclassified FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20220 retrotransposon protein, putative, unclassified, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20230 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20235 expressed protein FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20240 syntaxin 6, N-terminal domain containing protein, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20250 membrane associated DUF588 domain containing protein, putative, expressed FN2309 Chr10 9932001 10189000 0 0 Deletion 256999 LOC_Os10g20260 CSLF7 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN2309 Chr11 13307210 Chr8 6445842 0 Translocation 0 FN2309 Chr11 17122568 T-C 0 0 Single Base Substitution 0 HET FN2309 Chr11 2154042 2154043 0 0 Deletion 1 Homo FN2309 Chr11 2154141 G-A 0 0 Single Base Substitution 0 Homo FN2309 Chr11 23450752 C-T 0 0 Single Base Substitution 0 HET FN2309 Chr11 2538326 2538327 0 0 Deletion 1 Homo FN2309 Chr11 3940393 G-A 0 0 Single Base Substitution 0 Homo FN2309 Chr11 5688299 5688301 0 0 Deletion 2 frameshift_variant HET LOC_Os11g10440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2309 Chr11 8165507 A-G 0 0 Single Base Substitution 0 Homo FN2309 Chr11 9377136 9377145 0 0 Deletion 9 HET FN2309 Chr12 11468824 T-G 0 0 Single Base Substitution 0 Homo FN2309 Chr12 14077593 G-A 0 0 Single Base Substitution 0 HET FN2309 Chr12 14279150 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g24890 retrotransposon protein, putative, Ty3-gypsy subclass FN2309 Chr12 14437332 14441250 0 0 Inversion 0 FN2309 Chr12 16182375 Chr4 32905479 0 Translocation 0 LOC_Os04g55320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2309 Chr12 16182375 Chr4 32905479 0 Translocation 0 LOC_Os12g27490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2309 Chr12 19813272 C-G 0 0 Single Base Substitution 0 HET FN2309 Chr12 22863412 22863418 0 0 Insertion 6 HET FN2309 Chr2 7158889 Chr1 35235637 0 Translocation 0 FN2309 Chr3 15266969 15266971 0 0 Deletion 2 Homo FN2309 Chr3 15735563 15735576 0 0 Deletion 13 Homo FN2309 Chr3 17994513 17994516 0 0 Deletion 3 Homo FN2309 Chr3 22457513 A-G 0 0 Single Base Substitution 0 HET FN2309 Chr3 31613141 31613142 0 0 Insertion 1 Homo FN2309 Chr3 3971773 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g07800 RNA recognition motif containing protein, putative, expressed FN2309 Chr4 17556348 A-T 0 0 Single Base Substitution 0 HET FN2309 Chr4 19075167 19075199 0 0 Deletion 32 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os04g31860 retrotransposon protein, putative, unclassified, expressed FN2309 Chr4 19190720 A-T 0 0 Single Base Substitution 0 HET FN2309 Chr4 27464345 T-A 0 0 Single Base Substitution 0 Homo FN2309 Chr4 3116779 C-T 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os04g06010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2309 Chr4 955080 Chr1 1925140 0 Translocation 0 FN2309 Chr5 13474285 13999790 0 0 Inversion 0 FN2309 Chr5 13474285 13999790 0 0 Inversion 0 LOC_Os05g24200 retrotransposon protein, putative, unclassified, expressed FN2309 Chr5 13474301 13930292 0 0 Inversion 0 FN2309 Chr5 13474301 13930292 0 0 Inversion 0 LOC_Os05g24150 tetratricopeptide-like helical, putative, expressed FN2309 Chr5 14000117 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g24200 retrotransposon protein, putative, unclassified, expressed FN2309 Chr5 27358364 C-A 0 0 Single Base Substitution 0 HET FN2309 Chr5 27358365 T-A 0 0 Single Base Substitution 0 HET FN2309 Chr6 14978144 14978154 0 0 Deletion 10 HET FN2309 Chr6 2038291 A-T 0 0 Single Base Substitution 0 Homo FN2309 Chr6 27219929 Chr5 1081605 0 Translocation 0 LOC_Os06g45000 ubiquitin-conjugating enzyme, putative, expressed FN2309 Chr6 29712177 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g49020 26S proteasome non-ATPase regulatory subunit 14, putative, expressed FN2309 Chr6 29785457 C-A 0 0 Single Base Substitution 0 HET FN2309 Chr7 12597367 Chr4 12087422 0 Translocation 0 FN2309 Chr7 12597367 Chr4 12087422 0 Translocation 0 LOC_Os04g21380 retrotransposon protein, putative, unclassified, expressed FN2309 Chr7 171740 171741 0 0 Insertion 1 HET FN2309 Chr7 187808 T-C 0 0 Single Base Substitution 0 Homo FN2309 Chr7 25769956 C-T 0 0 Single Base Substitution 0 HET FN2309 Chr8 10523786 Chr6 27322816 0 Translocation 0 FN2309 Chr8 11174884 11174885 0 0 Deletion 1 frameshift_variant HET LOC_Os08g18730 retrotransposon protein, putative, unclassified, expressed FN2309 Chr8 15553746 C-T 0 0 Single Base Substitution 0 HET FN2309 Chr8 18628537 Chr4 2531310 0 Translocation 0 LOC_Os04g05104 retrotransposon protein, putative, unclassified, expressed FN2309 Chr8 18628537 Chr4 2531310 0 Translocation 0 LOC_Os08g30280 retrotransposon protein, putative, unclassified, expressed FN2309 Chr8 18683015 C-T 0 0 Single Base Substitution 0 HET FN2309 Chr8 20426985 20426987 0 0 Deletion 2 Homo FN2309 Chr8 23667308 A-T 0 0 Single Base Substitution 0 Homo FN2309 Chr9 10825658 G-A 0 0 Single Base Substitution 0 HET FN2309 Chr9 12981961 13230010 0 0 Inversion 0 FN2309 Chr9 12981961 13230015 0 0 Inversion 0 FN2309 Chr9 19844625 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g33610 retrotransposon protein, putative, unclassified, expressed FN2309 Chr9 22280260 G-A 0 0 Single Base Substitution 0 HET FN2309 Chr9 22280261 G-T 0 0 Single Base Substitution 0 HET FN2309 Chr9 22753455 T-C 0 0 Single Base Substitution 0 HET FN2309 Chr9 6229245 C-T 0 0 Single Base Substitution 0 HET