FN2314 Chr1 17347012 T-C 0 0 Single Base Substitution 0 HET FN2314 Chr1 25435571 25435582 0 0 Insertion 11 HET FN2314 Chr1 28566748 28566752 0 0 Deletion 4 Homo FN2314 Chr1 28720672 G-A 0 0 Single Base Substitution 0 Homo FN2314 Chr1 39991209 C-A 0 0 Single Base Substitution 0 HET FN2314 Chr1 43151205 A-G 0 0 Single Base Substitution 0 HET FN2314 Chr10 15534733 Chr7 7220316 0 Translocation 0 FN2314 Chr10 16820917 Chr1 41587105 0 Translocation 0 FN2314 Chr10 6470604 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g11702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 7073123 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g12690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 8462205 8462215 0 0 Deletion 10 HET FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18510 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18520 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18530 cytokinin-O-glucosyltransferase 2, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18540 retrotransposon protein, putative, Ty3-gypsy subclass FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18590 retrotransposon protein, putative, unclassified, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18600 retrotransposon protein, putative, Ty3-gypsy subclass FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18610 retrotransposon protein, putative, unclassified, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18620 retrotransposon protein, putative, Ty3-gypsy subclass FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18630 retrotransposon protein, putative, Ty3-gypsy subclass FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18640 retrotransposon protein, putative, Ty3-gypsy subclass FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18670 retrotransposon protein, putative, unclassified, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18700 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18704 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18710 hypothetical protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18720 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18730 retrotransposon protein, putative, unclassified FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18750 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18760 dirigent, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18770 retrotransposon protein, putative, unclassified FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18780 retrotransposon protein, putative, unclassified FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18800 conserved hypothetical protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18810 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18820 dirigent, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18850 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18860 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18870 dirigent, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18880 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18890 HNH endonuclease domain-containing protein, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18910 hypothetical protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18920 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18930 retrotransposon, putative, centromere-specific FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18940 retrotransposon, putative, centromere-specific, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18960 retrotransposon, putative, centromere-specific, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18970 retrotransposon protein, putative, unclassified FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18980 retrotransposon, putative, centromere-specific FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g18990 receptor kinase 2, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19030 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19040 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19050 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19064 retrotransposon protein, putative, Ty1-copia subclass FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19090 retrotransposon, putative, centromere-specific FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19100 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19110 cytochrome P450, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19120 retrotransposon protein, putative, Ty3-gypsy subclass FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19140 cytochrome P450 87A3, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19150 retrotransposon protein, putative, unclassified, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19160 receptor kinase, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19180 zinc finger family protein, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19190 vesicle transport protein GOT1B, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19200 vegetative cell wall protein gp1 precursor, putative, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19210 retrotransposon protein, putative, unclassified, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19230 expressed protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19240 retrotransposon protein, putative, LINE subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19250 hypothetical protein FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr10 9394001 9824000 0 0 Deletion 429999 LOC_Os10g19280 retrotransposon protein, putative, Ty1-copia subclass FN2314 Chr10 9694950 Chr3 16766814 0 Translocation 0 FN2314 Chr11 10564549 Chr2 9965844 0 Translocation 0 FN2314 Chr11 13171258 Chr4 936837 0 Translocation 0 LOC_Os11g22910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr11 15950035 Chr1 14847997 0 Translocation 0 FN2314 Chr11 16621520 Chr1 35242609 0 Translocation 0 FN2314 Chr11 18671677 Chr7 7595528 0 Translocation 0 LOC_Os07g13240 hypothetical protein FN2314 Chr11 18671677 Chr7 7595528 0 Translocation 0 LOC_Os11g31810 expressed protein FN2314 Chr11 18757657 Chr6 3230861 0 Translocation 0 LOC_Os06g06840 transposon protein, putative, unclassified, expressed FN2314 Chr11 18757657 Chr6 3230861 0 Translocation 0 LOC_Os11g31910 retrotransposon protein, putative, unclassified, expressed FN2314 Chr11 20143671 Chr4 14957141 0 Translocation 0 FN2314 Chr11 20143671 Chr4 14957141 0 Translocation 0 LOC_Os04g25784 expressed protein FN2314 Chr11 21579249 Chr4 6579709 0 Translocation 0 FN2314 Chr11 22856928 A-G 0 0 Single Base Substitution 0 HET FN2314 Chr11 22922301 Chr6 1553353 0 Translocation 0 FN2314 Chr11 26982430 Chr6 23272817 0 Translocation 0 FN2314 Chr11 27879279 Chr6 9219395 0 Translocation 0 FN2314 Chr11 28680292 Chr8 20028567 0 Translocation 0 FN2314 Chr11 28765170 Chr9 1675449 0 Translocation 0 FN2314 Chr11 3817164 Chr1 2752689 0 Translocation 0 FN2314 Chr11 3817164 Chr1 2752689 0 Translocation 0 LOC_Os01g05760 PAS2, putative, expressed FN2314 Chr12 11124487 C-T 0 0 Single Base Substitution 0 HET FN2314 Chr12 11832536 Chr3 15245750 0 Translocation 0 LOC_Os03g26704 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr12 11832536 Chr3 15245750 0 Translocation 0 LOC_Os12g20270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr12 13459403 Chr11 23449715 0 Translocation 0 FN2314 Chr12 15643040 C-T 0 0 Single Base Substitution 0 HET FN2314 Chr12 17638020 T-A 0 0 Single Base Substitution 0 HET FN2314 Chr12 21505973 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g35370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2314 Chr12 23183732 Chr8 4642052 0 Translocation 0 LOC_Os08g08150 expressed protein FN2314 Chr12 23183732 Chr8 4642052 0 Translocation 0 LOC_Os12g37760 RGH1A, putative, expressed FN2314 Chr12 23509532 24217830 0 0 Inversion 0 LOC_Os12g38280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr12 23509532 24217830 0 0 Inversion 0 LOC_Os12g39370 expressed protein FN2314 Chr12 24100845 24217828 0 0 Inversion 0 FN2314 Chr12 24100845 24217828 0 0 Inversion 0 LOC_Os12g39370 expressed protein FN2314 Chr12 26994382 Chr3 24335450 0 Translocation 0 FN2314 Chr12 26994382 Chr3 24335450 0 Translocation 0 LOC_Os03g43564 hypothetical protein FN2314 Chr12 27012200 Chr2 8113868 0 Translocation 0 FN2314 Chr12 731035 Chr11 691011 0 Translocation 0 FN2314 Chr12 930404 C-T 0 0 Single Base Substitution 0 HET FN2314 Chr2 23674826 A-T 0 0 Single Base Substitution 0 HET FN2314 Chr2 35302001 35343000 0 0 Deletion 40999 LOC_Os02g57640 KH domain containing protein, putative, expressed FN2314 Chr2 35302001 35343000 0 0 Deletion 40999 LOC_Os02g57650 No apical meristem protein, putative, expressed FN2314 Chr2 35302001 35343000 0 0 Deletion 40999 LOC_Os02g57660 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed FN2314 Chr2 35302001 35343000 0 0 Deletion 40999 LOC_Os02g57670 ribosomal L9, putative, expressed FN2314 Chr2 35302001 35343000 0 0 Deletion 40999 LOC_Os02g57690 kelch repeat protein, putative, expressed FN2314 Chr2 35302001 35343000 0 0 Deletion 40999 LOC_Os02g57700 protein kinase, putative, expressed FN2314 Chr2 35302001 35343000 0 0 Deletion 40999 LOC_Os02g57710 signal peptide peptidase-like 2B, putative, expressed FN2314 Chr2 620128 A-T 0 0 Single Base Substitution 0 Homo FN2314 Chr3 13362876 13362877 0 0 Deletion 1 frameshift_variant HET LOC_Os03g23110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr3 17532000 C-T 0 0 Single Base Substitution 0 Homo FN2314 Chr3 8443780 C-A 0 0 Single Base Substitution 0 Homo FN2314 Chr3 8452093 Chr2 3821621 0 Translocation 0 FN2314 Chr3 8618704 8618705 0 0 Deletion 1 frameshift_variant HET LOC_Os03g15620 retrotransposon protein, putative, unclassified, expressed FN2314 Chr4 14858156 14858157 0 0 Deletion 1 frameshift_variant HET LOC_Os04g25640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2314 Chr4 15915435 Chr3 32469434 0 Translocation 0 FN2314 Chr4 16774089 Chr1 31955400 0 Translocation 0 FN2314 Chr4 16780429 T-A 0 0 Single Base Substitution 0 HET FN2314 Chr4 22547375 Chr1 7916875 0 Translocation 0 FN2314 Chr4 24110925 24111033 0 0 Inversion 0 FN2314 Chr4 34055874 A-C 0 0 Single Base Substitution 0 HET FN2314 Chr4 3705920 T-A 0 0 Single Base Substitution 0 HET FN2314 Chr5 14966394 Chr2 28384013 0 Translocation 0 FN2314 Chr5 23346747 C-T 0 0 Single Base Substitution 0 HET FN2314 Chr5 24375417 Chr3 701207 0 Translocation 0 LOC_Os03g02150 adapitin protein, putative, expressed FN2314 Chr5 24375417 Chr3 701207 0 Translocation 0 LOC_Os05g41620 expressed protein FN2314 Chr5 29945899 29945900 0 0 Insertion 1 HET FN2314 Chr6 10276126 Chr4 4241547 0 Translocation 0 FN2314 Chr6 10800797 Chr4 16769108 0 Translocation 0 FN2314 Chr6 16700478 G-A 0 0 Single Base Substitution 0 HET FN2314 Chr6 17128497 17467621 0 0 Inversion 0 FN2314 Chr6 17128497 17467621 0 0 Inversion 0 LOC_Os06g30270 retrotransposon protein, putative, unclassified, expressed FN2314 Chr6 21296971 21647228 0 0 Inversion 0 FN2314 Chr6 21888456 T-C 0 0 Single Base Substitution 0 HET FN2314 Chr6 25107112 Chr5 10239450 0 Translocation 0 FN2314 Chr7 11077829 Chr4 29420504 0 Translocation 0 FN2314 Chr7 11077829 Chr4 29420504 0 Translocation 0 LOC_Os04g49290 retrotransposon protein, putative, unclassified, expressed FN2314 Chr7 11777384 Chr2 16654924 0 Translocation 0 FN2314 Chr7 14357763 G-A 0 0 Single Base Substitution 0 HET FN2314 Chr7 19796882 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g33150 retrotransposon protein, putative, unclassified, expressed FN2314 Chr7 20170939 Chr6 5157867 0 Translocation 0 FN2314 Chr7 20886200 C-G 0 0 Single Base Substitution 0 Homo FN2314 Chr7 21988544 21988552 0 0 Deletion 8 Homo FN2314 Chr7 2744857 Chr4 35498044 0 Translocation 0 FN2314 Chr7 27769892 Chr1 29676879 0 Translocation 0 FN2314 Chr7 4765554 Chr1 23994254 0 Translocation 0 FN2314 Chr7 6431611 6431617 0 0 Insertion 6 inframe_insertion HET LOC_Os07g11640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr8 10395237 Chr1 31269133 0 Translocation 0 FN2314 Chr8 10523768 Chr7 8953433 0 Translocation 0 FN2314 Chr8 14099051 14099053 0 0 Deletion 2 HET FN2314 Chr8 17931637 Chr1 2892449 0 Translocation 0 FN2314 Chr8 17950441 Chr7 6428545 0 Translocation 0 FN2314 Chr8 17950441 Chr7 6428545 0 Translocation 0 LOC_Os07g11640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2314 Chr8 19754201 Chr1 24031476 0 Translocation 0 FN2314 Chr8 24363344 Chr2 1947527 0 Translocation 0 FN2314 Chr8 24363344 Chr2 1947527 0 Translocation 0 LOC_Os02g04420 expressed protein FN2314 Chr8 28411989 Chr7 8173485 0 Translocation 0 FN2314 Chr8 28411989 Chr7 8173485 0 Translocation 0 LOC_Os07g14320 retrotransposon protein, putative, unclassified FN2314 Chr8 6896135 Chr4 1405427 0 Translocation 0 FN2314 Chr8 6896135 Chr4 1405427 0 Translocation 0 LOC_Os04g03300 retrotransposon protein, putative, unclassified, expressed FN2314 Chr9 13258549 13258550 0 0 Insertion 1 HET FN2314 Chr9 13374910 G-A 0 0 Single Base Substitution 0 HET FN2314 Chr9 19310217 Chr3 8413965 0 Translocation 0 FN2314 Chr9 19310217 Chr3 8413965 0 Translocation 0 LOC_Os03g15380 expressed protein FN2314 Chr9 22493141 22493142 0 0 Deletion 1 HET