FN2324 Chr1 12150396 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr1 13504064 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr1 15359468 A-T 0 0 Single Base Substitution 0 HET FN2324 Chr1 17111833 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr1 1784288 A-C 0 0 Single Base Substitution 0 HET FN2324 Chr1 21588752 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr1 25079322 G-T 0 0 Single Base Substitution 0 Homo FN2324 Chr1 26924977 26925004 0 0 Deletion 27 Homo FN2324 Chr1 30568007 G-A 0 0 Single Base Substitution 0 Homo FN2324 Chr1 33354477 G-A 0 0 Single Base Substitution 0 Homo FN2324 Chr1 41733085 41733091 0 0 Deletion 6 Homo FN2324 Chr1 5270183 5270185 0 0 Insertion 2 HET FN2324 Chr1 5903487 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr10 11568547 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr10 1737849 C-A 0 0 Single Base Substitution 0 HET FN2324 Chr10 7681812 G-T 0 0 Single Base Substitution 0 HET FN2324 Chr11 28563459 28563460 0 0 Deletion 1 HET FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08630 retrotransposon protein, putative, Ty3-gypsy subclass FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08640 retrotransposon protein, putative, unclassified, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08650 transposon protein, putative, CACTA, En/Spm sub-class FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08660 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08670 NAD kinase, putative, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08680 expressed protein FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08707 expressed protein FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08720 retrotransposon, putative, centromere-specific, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08729 retrotransposon, putative, centromere-specific FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08740 expressed protein FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08750 pectinesterase, putative, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08760 pectinesterase family protein, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08780 hypothetical protein FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08790 transposon protein, putative, CACTA, En/Spm sub-class FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08800 expressed protein FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08820 expressed protein FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08830 kelch domain containing protein, putative, expressed FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08840 expressed protein FN2324 Chr11 4588001 4690000 0 0 Deletion 101999 LOC_Os11g08850 retrotransposon protein, putative, unclassified, expressed FN2324 Chr11 5085156 Chr6 30274449 0 Translocation 0 LOC_Os11g09474 OsFBX400 - F-box domain containing protein, expressed FN2324 Chr11 5164491 Chr4 10268697 0 Translocation 0 LOC_Os11g09670 OsFBX409 - F-box domain containing protein, expressed FN2324 Chr11 5495054 G-T 0 0 Single Base Substitution 0 HET FN2324 Chr12 11123865 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr12 14608495 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g25330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2324 Chr12 21236693 A-C 0 0 Single Base Substitution 0 Homo FN2324 Chr12 27207326 C-A 0 0 Single Base Substitution 0 Homo FN2324 Chr3 11117124 Chr1 17106089 0 Translocation 0 LOC_Os01g31270 annexin, putative, expressed FN2324 Chr3 11117124 Chr1 17106089 0 Translocation 0 LOC_Os03g19760 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed FN2324 Chr3 11117130 Chr1 17112501 0 Translocation 0 LOC_Os03g19760 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed FN2324 Chr3 11668342 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr3 15940993 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g27800 paramyosin, putative, expressed FN2324 Chr3 28389567 28389571 0 0 Insertion 4 HET FN2324 Chr3 5812667 G-A 0 0 Single Base Substitution 0 Homo FN2324 Chr3 8730874 G-A 0 0 Single Base Substitution 0 Homo FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18230 retrotransposon, putative, centromere-specific FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18244 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18260 retrotransposon protein, putative, unclassified FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18280 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18290 retrotransposon protein, putative, unclassified FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18300 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18310 retrotransposon, putative, centromere-specific, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18320 retrotransposon protein, putative, Ty3-gypsy subclass FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18350 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18360 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18380 cytochrome P450, putative, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18390 transposon protein, putative, unclassified, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18400 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18410 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18420 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18430 expressed protein FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18440 retrotransposon protein, putative, unclassified FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18450 retrotransposon protein, putative, Ty3-gypsy subclass FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18470 retrotransposon, putative, centromere-specific, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18490 retrotransposon protein, putative, Ty3-gypsy subclass FN2324 Chr4 10074001 10229000 0 0 Deletion 154999 LOC_Os04g18500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2324 Chr4 11929140 Chr1 17112509 0 Translocation 0 FN2324 Chr4 11929148 Chr1 17169105 0 Translocation 0 FN2324 Chr4 29202312 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr4 35035001 35054000 0 0 Deletion 18999 LOC_Os04g58900 hydrolase, NUDIX family, domain containing protein, expressed FN2324 Chr4 35035001 35054000 0 0 Deletion 18999 LOC_Os04g58910 receptor protein kinase TMK1 precursor, putative, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08160 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08170 CBL-interacting protein kinase, putative, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08180 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08190 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08200 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08210 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08230 retrotransposon, putative, centromere-specific, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08240 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08250 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08260 hypothetical protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08290 ZOS4-04 - C2H2 zinc finger protein, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08300 retrotransposon protein, putative, Ty3-gypsy subclass FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08310 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08320 YIF1B, putative, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08330 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08340 OsSigP3 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08350 cysteine synthase, chloroplast/chromoplast precursor, putative, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08360 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08370 Leucine Rich Repeat family protein, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08390 Leucine Rich Repeat family protein, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08400 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08410 ELM2 domain containing protein, putative, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08415 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08430 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08440 retrotransposon protein, putative, unclassified, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08450 expressed protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08460 OsFBX115 - F-box domain containing protein, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08470 OsFBX116 - F-box domain containing protein, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08500 conserved hypothetical protein FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08510 OsFBX117 - F-box domain containing protein, expressed FN2324 Chr4 4344001 4618000 0 0 Deletion 273999 LOC_Os04g08520 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2324 Chr4 4958227 4958531 0 0 Deletion 304 frameshift_variant&splice_donor_variant&splice_region_variant&intron_variant HET LOC_Os04g09330 expressed protein FN2324 Chr4 5670323 T-A 0 0 Single Base Substitution 0 HET FN2324 Chr4 5670324 T-C 0 0 Single Base Substitution 0 HET FN2324 Chr4 6334994 C-A 0 0 Single Base Substitution 0 HET FN2324 Chr5 12138678 C-A 0 0 Single Base Substitution 0 HET FN2324 Chr5 24691380 24691381 0 0 Deletion 1 HET FN2324 Chr5 26915813 26915826 0 0 Deletion 13 splice_acceptor_variant&inframe_deletion&splice_region_variant&intron_variant Homo LOC_Os05g46460 hydrolase, alpha/beta fold family domain containing protein, expressed FN2324 Chr5 8084122 G-T 0 0 Single Base Substitution 0 HET FN2324 Chr6 15031930 C-A 0 0 Single Base Substitution 0 Homo FN2324 Chr6 21300989 T-C 0 0 Single Base Substitution 0 Homo FN2324 Chr6 22255013 22255020 0 0 Deletion 7 frameshift_variant Homo LOC_Os06g37570 expressed protein FN2324 Chr6 25463080 T-A 0 0 Single Base Substitution 0 HET FN2324 Chr6 26020815 T-A 0 0 Single Base Substitution 0 HET FN2324 Chr6 30274447 Chr4 10297216 0 Translocation 0 FN2324 Chr6 30274447 Chr4 10297216 0 Translocation 0 LOC_Os04g18620 retrotransposon protein, putative, unclassified, expressed FN2324 Chr6 8431487 C-G 0 0 Single Base Substitution 0 HET FN2324 Chr7 1110936 C-A 0 0 Single Base Substitution 0 Homo FN2324 Chr7 17690462 17690464 0 0 Deletion 2 HET FN2324 Chr7 19570787 Chr6 10581656 0 Translocation 0 LOC_Os07g32750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2324 Chr7 21642661 C-A 0 0 Single Base Substitution 0 HET FN2324 Chr7 3616001 3675000 0 0 Deletion 58999 LOC_Os07g07280 expressed protein FN2324 Chr7 3616001 3675000 0 0 Deletion 58999 LOC_Os07g07290 expressed protein FN2324 Chr7 3616001 3675000 0 0 Deletion 58999 LOC_Os07g07300 expressed protein FN2324 Chr7 3616001 3675000 0 0 Deletion 58999 LOC_Os07g07310 polynucleotide phosphorylase, putative, expressed FN2324 Chr7 3616001 3675000 0 0 Deletion 58999 LOC_Os07g07320 glutathione S-transferase, putative, expressed FN2324 Chr7 3616001 3675000 0 0 Deletion 58999 LOC_Os07g07340 glucan endo-1,3-beta-glucosidase precursor, putative, expressed FN2324 Chr7 3855181 3855187 0 0 Deletion 6 Homo FN2324 Chr7 4571366 Chr5 23338672 0 Translocation 0 FN2324 Chr7 4571377 Chr5 23338376 0 Translocation 0 FN2324 Chr7 6126921 Chr3 22181916 0 Translocation 0 LOC_Os03g39900 retrotransposon protein, putative, unclassified, expressed FN2324 Chr7 6126921 Chr3 22181916 0 Translocation 0 LOC_Os07g11080 retrotransposon protein, putative, unclassified, expressed FN2324 Chr7 6127421 Chr3 22181904 0 Translocation 0 LOC_Os03g39900 retrotransposon protein, putative, unclassified, expressed FN2324 Chr7 6127421 Chr3 22181904 0 Translocation 0 LOC_Os07g11080 retrotransposon protein, putative, unclassified, expressed FN2324 Chr7 6416001 6426000 0 0 Deletion 9999 LOC_Os07g11630 LTPL163 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11650 LTPL164 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11670 retrotransposon protein, putative, unclassified, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11680 retrotransposon protein, putative, unclassified, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11690 hypothetical protein FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11700 retrotransposon protein, putative, unclassified, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11710 expressed protein FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11720 retrotransposon protein, putative, unclassified, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11739 cytochrome P450, putative, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11770 expressed protein FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11780 transposon protein, putative, CACTA, En/Spm sub-class FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11790 terpene synthase, putative, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11810 retrotransposon protein, putative, Ty3-gypsy subclass FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11820 transposon protein, putative, CACTA, En/Spm sub-class FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11830 transposon protein, putative, CACTA, En/Spm sub-class FN2324 Chr7 6431001 6552000 0 0 Deletion 120999 LOC_Os07g11840 transposon protein, putative, CACTA, En/Spm sub-class FN2324 Chr7 6485930 C-T 0 0 Single Base Substitution 0 HET FN2324 Chr7 6597001 6649000 0 0 Deletion 51999 LOC_Os07g11890 cytochrome P450, putative, expressed FN2324 Chr7 6597001 6649000 0 0 Deletion 51999 LOC_Os07g11900 PROLM19 - Prolamin precursor, putative, expressed FN2324 Chr7 6597001 6649000 0 0 Deletion 51999 LOC_Os07g11910 PROLM20 - Prolamin precursor, expressed FN2324 Chr7 6597001 6649000 0 0 Deletion 51999 LOC_Os07g11920 PROLM22 - Prolamin precursor, expressed FN2324 Chr7 6597001 6649000 0 0 Deletion 51999 LOC_Os07g11970 cytochrome P450, putative, expressed FN2324 Chr7 6597001 6649000 0 0 Deletion 51999 LOC_Os07g11980 expressed protein FN2324 Chr7 6597001 6649000 0 0 Deletion 51999 LOC_Os07g11990 conserved hypothetical protein FN2324 Chr7 6754724 Chr4 4958962 0 Translocation 0 LOC_Os04g09330 expressed protein FN2324 Chr7 6754724 Chr4 4958962 0 Translocation 0 LOC_Os07g12100 expressed protein FN2324 Chr7 6759666 Chr4 4344074 0 Translocation 0 FN2324 Chr7 6759666 Chr4 4344074 0 Translocation 0 LOC_Os04g08160 expressed protein FN2324 Chr8 20522155 G-A 0 0 Single Base Substitution 0 HET FN2324 Chr8 20522157 T-C 0 0 Single Base Substitution 0 HET FN2324 Chr8 6705895 G-T 0 0 Single Base Substitution 0 HET FN2324 Chr9 6807841 6807842 0 0 Insertion 1 HET