FN2381 Chr1 10417955 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g18520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2381 Chr1 19106605 G-A 0 0 Single Base Substitution 0 HET FN2381 Chr1 21442377 G-A 0 0 Single Base Substitution 0 HET FN2381 Chr1 36286687 36286698 0 0 Deletion 11 HET FN2381 Chr1 5806870 G-A 0 0 Single Base Substitution 0 HET FN2381 Chr10 161688 161689 0 0 Deletion 1 HET FN2381 Chr10 17209952 A-T 0 0 Single Base Substitution 0 HET FN2381 Chr10 17926105 17926108 0 0 Insertion 3 HET FN2381 Chr10 3329409 C-T 0 0 Single Base Substitution 0 Homo FN2381 Chr11 10470149 A-G 0 0 Single Base Substitution 0 HET FN2381 Chr12 13565527 C-T 0 0 Single Base Substitution 0 HET FN2381 Chr12 13565528 A-T 0 0 Single Base Substitution 0 HET FN2381 Chr12 14544823 14544824 0 0 Deletion 1 HET FN2381 Chr12 19390573 G-T 0 0 Single Base Substitution 0 HET FN2381 Chr12 4320781 4320782 0 0 Deletion 1 Homo FN2381 Chr12 5202193 5202212 0 0 Deletion 19 Homo FN2381 Chr12 8980237 Chr2 23246110 0 Translocation 0 FN2381 Chr2 12986690 12986702 0 0 Deletion 12 Homo FN2381 Chr2 26785269 C-G 0 0 Single Base Substitution 0 HET FN2381 Chr2 35362089 A-G 0 0 Single Base Substitution 0 HET FN2381 Chr2 999902 G-A 0 0 Single Base Substitution 0 HET FN2381 Chr3 23649476 C-T 0 0 Single Base Substitution 0 HET FN2381 Chr4 10331655 G-A 0 0 Single Base Substitution 0 HET FN2381 Chr4 10724103 C-T 0 0 Single Base Substitution 0 HET FN2381 Chr4 20431631 20431637 0 0 Deletion 6 HET FN2381 Chr4 30751417 30751418 0 0 Deletion 1 frameshift_variant HET LOC_Os04g51860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2381 Chr4 32658651 T-G 0 0 Single Base Substitution 0 HET FN2381 Chr4 33112140 Chr2 8783449 0 Translocation 0 LOC_Os04g55620 receptor kinase, putative, expressed FN2381 Chr4 33327218 33327220 0 0 Deletion 2 HET FN2381 Chr4 573626 573628 0 0 Deletion 2 HET FN2381 Chr5 12332959 T-C 0 0 Single Base Substitution 0 HET FN2381 Chr5 16922039 G-T 0 0 Single Base Substitution 0 HET FN2381 Chr5 29119411 29119412 0 0 Deletion 1 HET FN2381 Chr5 7945916 G-A 0 0 Single Base Substitution 0 HET FN2381 Chr5 8864001 8895000 0 0 Deletion 30999 LOC_Os05g15670 expressed protein FN2381 Chr5 8864001 8895000 0 0 Deletion 30999 LOC_Os05g15680 expressed protein FN2381 Chr5 8864001 8895000 0 0 Deletion 30999 LOC_Os05g15690 expansin precursor, putative, expressed FN2381 Chr5 8864001 8895000 0 0 Deletion 30999 LOC_Os05g15700 expressed protein FN2381 Chr5 8864001 8895000 0 0 Deletion 30999 LOC_Os05g15710 hypothetical protein FN2381 Chr5 8864001 8895000 0 0 Deletion 30999 LOC_Os05g15720 expressed protein FN2381 Chr5 8864001 8895000 0 0 Deletion 30999 LOC_Os05g15730 retrotransposon, putative, centromere-specific, expressed FN2381 Chr5 8864001 8895000 0 0 Deletion 30999 LOC_Os05g15740 expressed protein FN2381 Chr5 8864001 8895000 0 0 Deletion 30999 LOC_Os05g15750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2381 Chr5 8895429 9478845 0 0 Inversion 0 FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g15940 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g15950 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g15960 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g15970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g15980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16000 expressed protein FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16010 retrotransposon protein, putative, LINE subclass, expressed FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16020 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16030 hypothetical protein FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16040 hypothetical protein FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16054 expressed protein FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16060 expressed protein FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16080 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16090 hypothetical protein FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16100 expressed protein FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16110 expressed protein FN2381 Chr5 8996001 9118000 0 0 Deletion 121999 LOC_Os05g16120 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16140 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16160 malonyl-CoA isoflavone 7-O-glucoside-6-O-malonyltransferase, putative, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16170 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16180 NB-ARC domain containing protein, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16200 blight resistance protein T118, putative, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16210 glycine-rich protein, putative, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16220 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16230 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16240 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16250 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16280 transposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16290 transposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16300 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16315 translation initiation factor IF-2, putative, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16320 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16340 transposon protein, putative, CACTA, En/Spm sub-class FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16360 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16370 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16380 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16395 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16410 retrotransposon, putative, centromere-specific, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16420 SHR5-receptor-like kinase, putative, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16430 SHR5-receptor-like kinase, putative, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16440 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16450 hypothetical protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16460 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16470 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16480 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16490 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16500 transposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16510 retrotransposon, putative, centromere-specific FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16520 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16530 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16540 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16550 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16560 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16570 retrotransposon protein, putative, unclassified, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16600 retrotransposon protein, putative, Ty3-gypsy subclass FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16610 transposon protein, putative, CACTA, En/Spm sub-class FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16620 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16630 thioredoxin domain-containing protein 9, putative, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16640 DUF630/DUF632 domains containing protein, putative, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16660 WD domain, G-beta repeat domain containing protein, expressed FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16664 expressed protein FN2381 Chr5 9125001 9479000 0 0 Deletion 353999 LOC_Os05g16670 SHR5-receptor-like kinase, putative, expressed FN2381 Chr5 9480055 C-T 0 0 Single Base Substitution 0 HET FN2381 Chr5 9480056 T-A 0 0 Single Base Substitution 0 HET FN2381 Chr6 12040644 12040645 0 0 Deletion 1 Homo FN2381 Chr6 15437108 15437262 0 0 Deletion 154 HET FN2381 Chr6 16809159 16809161 0 0 Deletion 2 HET FN2381 Chr6 20502510 Chr1 11599826 0 Translocation 0 LOC_Os06g35170 expressed protein FN2381 Chr6 25084358 A-G 0 0 Single Base Substitution 0 HET FN2381 Chr7 10555321 T-A 0 0 Single Base Substitution 0 HET FN2381 Chr7 15420530 T-C 0 0 Single Base Substitution 0 HET FN2381 Chr7 17247534 T-C 0 0 Single Base Substitution 0 HET FN2381 Chr7 22273859 22273863 0 0 Deletion 4 Homo FN2381 Chr7 2414296 G-C 0 0 Single Base Substitution 0 HET FN2381 Chr7 774888 G-T 0 0 Single Base Substitution 0 Homo FN2381 Chr7 8587210 T-G 0 0 Single Base Substitution 0 HET FN2381 Chr8 11855035 11855037 0 0 Deletion 2 HET FN2381 Chr8 16183431 16183437 0 0 Deletion 6 Homo FN2381 Chr8 17072143 T-C 0 0 Single Base Substitution 0 HET FN2381 Chr8 17990054 Chr2 32007572 0 Translocation 0 FN2381 Chr8 23604172 G-T 0 0 Single Base Substitution 0 HET FN2381 Chr8 23862013 G-T 0 0 Single Base Substitution 0 HET FN2381 Chr8 23862015 A-T 0 0 Single Base Substitution 0 HET FN2381 Chr8 24169046 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g38160 cytokinin-O-glucosyltransferase, putative, expressed FN2381 Chr8 24630570 C-T 0 0 Single Base Substitution 0 HET FN2381 Chr8 529976 G-A 0 0 Single Base Substitution 0 HET FN2381 Chr9 11507216 A-G 0 0 Single Base Substitution 0 HET FN2381 Chr9 13508647 13508655 0 0 Deletion 8 frameshift_variant HET LOC_Os09g22350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2381 Chr9 1846496 G-T 0 0 Single Base Substitution 0 HET FN2381 Chr9 19204018 19204022 0 0 Deletion 4 Homo FN2381 Chr9 2992485 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g06360 retrotransposon, putative, centromere-specific FN2381 Chr9 8567438 G-C 0 0 Single Base Substitution 0 HET FN2381 Chr9 865209 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g02190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed