FN2411 Chr1 14956024 T-C 0 0 Single Base Substitution 0 HET FN2411 Chr1 16850876 16900505 0 0 Inversion 0 FN2411 Chr1 23063993 23063996 0 0 Deletion 3 HET FN2411 Chr1 25285964 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr1 32003946 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr1 34834641 T-C 0 0 Single Base Substitution 0 HET FN2411 Chr1 36652410 G-T 0 0 Single Base Substitution 0 HET FN2411 Chr1 5606740 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr10 11030208 G-T 0 0 Single Base Substitution 0 HET FN2411 Chr10 13072706 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr10 17125758 Chr1 41858990 0 Translocation 0 FN2411 Chr10 2771001 2802000 0 0 Deletion 30999 LOC_Os10g05580 expressed protein FN2411 Chr10 2771001 2802000 0 0 Deletion 30999 LOC_Os10g05590 OsFBX374 - F-box domain containing protein, expressed FN2411 Chr10 2771001 2802000 0 0 Deletion 30999 LOC_Os10g05600 thaumatin-like protein 1 precursor, putative, expressed FN2411 Chr10 2771001 2802000 0 0 Deletion 30999 LOC_Os10g05610 expressed protein FN2411 Chr10 4449157 A-G 0 0 Single Base Substitution 0 Homo FN2411 Chr10 8293284 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr11 10378174 G-A 0 0 Single Base Substitution 0 Homo FN2411 Chr11 16044662 C-G 0 0 Single Base Substitution 0 HET FN2411 Chr11 16696442 C-T 0 0 Single Base Substitution 0 Homo FN2411 Chr11 27606030 A-G 0 0 Single Base Substitution 0 HET FN2411 Chr11 3919606 A-T 0 0 Single Base Substitution 0 HET FN2411 Chr11 7662155 7662157 0 0 Deletion 2 HET FN2411 Chr12 12932499 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22900 transposon protein, putative, CACTA, En/Spm sub-class FN2411 Chr12 22022165 G-C 0 0 Single Base Substitution 0 HET FN2411 Chr12 22167302 22167319 0 0 Deletion 17 Homo FN2411 Chr12 26901771 C-A 0 0 Single Base Substitution 0 HET FN2411 Chr12 2699832 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr12 3390656 T-C 0 0 Single Base Substitution 0 HET FN2411 Chr12 4661693 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr12 5017858 T-A 0 0 Single Base Substitution 0 HET FN2411 Chr2 10050107 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr2 12711457 C-T 0 0 Single Base Substitution 0 Homo FN2411 Chr2 21554453 T-A 0 0 Single Base Substitution 0 Homo FN2411 Chr2 22742957 22742971 0 0 Deletion 14 frameshift_variant Homo LOC_Os02g37690 UDP-glucoronosyl and UDP-glucosyl transferase, putative, expressed FN2411 Chr2 2675386 C-G 0 0 Single Base Substitution 0 HET FN2411 Chr2 26816653 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr2 4476301 4476302 0 0 Deletion 1 HET FN2411 Chr2 6489954 A-G 0 0 Single Base Substitution 0 HET FN2411 Chr3 1088293 1088294 0 0 Deletion 1 HET FN2411 Chr3 20328390 20328405 0 0 Deletion 15 HET FN2411 Chr3 2087012 T-C 0 0 Single Base Substitution 0 HET FN2411 Chr3 21886001 21924000 0 0 Deletion 37999 LOC_Os03g39390 expressed protein FN2411 Chr3 21886001 21924000 0 0 Deletion 37999 LOC_Os03g39400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2411 Chr3 21886001 21924000 0 0 Deletion 37999 LOC_Os03g39407 expressed protein FN2411 Chr3 21886001 21924000 0 0 Deletion 37999 LOC_Os03g39432 CPuORF31 - conserved peptide uORF-containing transcript, expressed FN2411 Chr3 21886001 21924000 0 0 Deletion 37999 LOC_Os03g39450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2411 Chr3 31307985 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr3 33286277 33286280 0 0 Deletion 3 HET FN2411 Chr3 35595431 35595433 0 0 Insertion 2 frameshift_variant HET LOC_Os03g62910 expressed protein FN2411 Chr3 36010891 A-G 0 0 Single Base Substitution 0 HET FN2411 Chr3 9533521 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr3 9731374 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g17510 pentatricopeptide, putative, expressed FN2411 Chr4 13586372 13586390 0 0 Deletion 18 HET FN2411 Chr4 14846897 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr4 23564109 A-T 0 0 Single Base Substitution 0 Homo FN2411 Chr4 25521534 25521539 0 0 Deletion 5 HET FN2411 Chr4 26873482 C-T 0 0 Single Base Substitution 0 Homo FN2411 Chr4 33574749 A-G 0 0 Single Base Substitution 0 Homo FN2411 Chr4 34847283 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr4 3706242 C-G 0 0 Single Base Substitution 0 HET FN2411 Chr4 6794737 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g12310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2411 Chr4 9762905 T-C 0 0 Single Base Substitution 0 HET FN2411 Chr5 1030528 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr5 12424813 Chr1 733529 0 Translocation 0 LOC_Os01g02320 protein kinase domain containing protein, expressed FN2411 Chr5 12424813 Chr1 733529 0 Translocation 0 LOC_Os05g21120 retrotransposon protein, putative, unclassified, expressed FN2411 Chr5 12427303 Chr1 733526 0 Translocation 0 LOC_Os01g02320 protein kinase domain containing protein, expressed FN2411 Chr5 12427303 Chr1 733526 0 Translocation 0 LOC_Os05g21120 retrotransposon protein, putative, unclassified, expressed FN2411 Chr5 21158093 21158102 0 0 Deletion 9 HET FN2411 Chr5 5154448 C-A 0 0 Single Base Substitution 0 Homo FN2411 Chr6 12619528 C-T 0 0 Single Base Substitution 0 Homo FN2411 Chr6 15145253 15145274 0 0 Deletion 21 Homo FN2411 Chr6 17925805 A-T 0 0 Single Base Substitution 0 Homo FN2411 Chr6 20222800 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr6 25072192 A-G 0 0 Single Base Substitution 0 HET FN2411 Chr6 30049581 30049582 0 0 Deletion 1 Homo FN2411 Chr6 30176295 30176325 0 0 Deletion 30 HET FN2411 Chr6 692328 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr6 8090184 G-T 0 0 Single Base Substitution 0 HET FN2411 Chr7 14276574 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr7 17624359 17624372 0 0 Deletion 13 Homo FN2411 Chr7 2350042 T-C 0 0 Single Base Substitution 0 Homo FN2411 Chr7 27308020 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g45740 expressed protein FN2411 Chr7 8155001 8183000 0 0 Deletion 27999 LOC_Os07g14300 retrotransposon protein, putative, unclassified, expressed FN2411 Chr7 8155001 8183000 0 0 Deletion 27999 LOC_Os07g14310 expressed protein FN2411 Chr7 8155001 8183000 0 0 Deletion 27999 LOC_Os07g14320 retrotransposon protein, putative, unclassified FN2411 Chr7 8155001 8183000 0 0 Deletion 27999 LOC_Os07g14330 expressed protein FN2411 Chr7 8157552 Chr3 21879845 0 Translocation 0 FN2411 Chr7 8182768 Chr3 21882153 0 Translocation 0 FN2411 Chr7 8182768 Chr3 21882153 0 Translocation 0 LOC_Os03g39380 expressed protein FN2411 Chr8 11002016 G-A 0 0 Single Base Substitution 0 Homo FN2411 Chr8 11937875 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr8 12304288 A-T 0 0 Single Base Substitution 0 HET FN2411 Chr8 16351591 A-T 0 0 Single Base Substitution 0 HET FN2411 Chr8 16862583 16862589 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os08g27660 expressed protein FN2411 Chr8 17462139 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr8 21141772 21141786 0 0 Deletion 14 HET FN2411 Chr8 3891993 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr8 4710555 4710556 0 0 Deletion 1 HET FN2411 Chr8 4718232 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr8 6546538 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g11130 retrotransposon protein, putative, unclassified, expressed FN2411 Chr8 9601011 G-A 0 0 Single Base Substitution 0 Homo FN2411 Chr9 11599509 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr9 15710872 15710877 0 0 Deletion 5 HET FN2411 Chr9 15862086 C-T 0 0 Single Base Substitution 0 HET FN2411 Chr9 16098466 16098467 0 0 Deletion 1 HET FN2411 Chr9 17215927 G-A 0 0 Single Base Substitution 0 HET FN2411 Chr9 22820784 22820788 0 0 Deletion 4 HET FN2411 Chr9 7323076 G-T 0 0 Single Base Substitution 0 Homo