FN242-S Chr1 16529346 16529352 0 0 Deletion 6 LOC_Os01g29488 retrotransposon protein, putative, unclassified, expressed FN242-S Chr1 42150424 42150432 0 0 Deletion 8 FN242-S Chr1 5569484 5569487 0 0 Deletion 3 FN242-S Chr1 7799154 7799164 0 0 Deletion 10 FN242-S Chr1 7815564 7815565 0 0 Deletion 1 FN242-S Chr10 1496067 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN242-S Chr10 2484291 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN242-S Chr11 17833607 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN242-S Chr12 14772472 14772473 0 0 Deletion 1 FN242-S Chr12 14980045 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g25830 retrotransposon protein, putative, unclassified, expressed FN242-S Chr12 1518467 1518483 0 0 Deletion 16 FN242-S Chr12 17641982 17685018 0 0 Inversion 43036 LOC_Os12g29660 DEAD-box ATP-dependent RNA helicase, putative, expressed FN242-S Chr12 17641994 17685021 0 0 Inversion 43027 LOC_Os12g29660 DEAD-box ATP-dependent RNA helicase, putative, expressed FN242-S Chr12 1795074 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN242-S Chr12 19792011 19792029 0 0 Deletion 18 FN242-S Chr12 22228950 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN242-S Chr12 23785346 23785347 0 0 Deletion 1 FN242-S Chr12 25184923 25184934 0 0 Deletion 11 LOC_Os12g40680 retrotransposon protein, putative, unclassified, expressed FN242-S Chr12 26145427 26442173 0 0 Inversion 296746 FN242-S Chr2 11402820 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN242-S Chr2 11403584 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g19510 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed FN242-S Chr2 11412848 11424367 0 0 Deletion 11519 LOC_Os02g19530 lectin-like receptor kinase, putative, expressed FN242-S Chr2 11412848 11424367 0 0 Deletion 11519 LOC_Os02g19540 OsFBX47 - F-box domain containing protein, expressed FN242-S Chr2 19433089 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN242-S Chr2 31208332 31208338 0 0 Deletion 6 FN242-S Chr2 33766950 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN242-S Chr2 8141526 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN242-S Chr3 2083930 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN242-S Chr4 13844301 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g24190 growth-regulating factor 11, putative, expressed FN242-S Chr4 13844302 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN242-S Chr4 19759991 19760494 0 0 Deletion 503 FN242-S Chr4 21029001 21074000 0 0 Deletion 45000 LOC_Os04g34690 transposon protein, putative, unclassified, expressed FN242-S Chr4 21029001 21074000 0 0 Deletion 45000 LOC_Os04g34740 transposon protein, putative, unclassified, expressed FN242-S Chr4 21029001 21074000 0 0 Deletion 45000 LOC_Os04g34750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN242-S Chr4 21029001 21074000 0 0 Deletion 45000 LOC_Os04g34760 retrotransposon protein, putative, unclassified, expressed FN242-S Chr4 22739386 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44900 lectin-like receptor kinase, putative, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44910 receptor like protein kinase, putative, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44920 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44924 short-chain dehydrogenase/reductase, putative, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44930 expressed protein FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44940 hypothetical protein FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44950 short-chain dehydrogenase/reductase, putative, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44960 retrotransposon protein, putative, unclassified, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44970 retrotransposon protein, putative, unclassified, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44980 short-chain dehydrogenase/reductase, putative, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g44990 expressed protein FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g45000 short-chain dehydrogenase/reductase, putative, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g45010 OsPLIM2b - LIM domain protein, putative actin-binding protein and transcription factor, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g45020 MYB family transcription factor, putative, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g45030 hypothetical protein FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g45040 DEAD-box ATP-dependent RNA helicase, putative, expressed FN242-S Chr4 26575001 26660000 0 0 Deletion 85000 LOC_Os04g45050 hypothetical protein FN242-S Chr4 6067787 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g11160 retrotransposon protein, putative, Ty1-copia subclass, expressed FN242-S Chr4 7451372 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g13390 retrotransposon protein, putative, unclassified FN242-S Chr5 11687537 Chr2 2127960 0 Translocation 0 LOC_Os02g04700 tRNA synthetases class II domain containing protein, expressed FN242-S Chr5 11687537 Chr2 2127960 0 Translocation 0 LOC_Os05g19990 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20000 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20010 expressed protein FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20020 polygalacturonase, putative, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20030 DUF617 domain containing protein, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20039 expressed protein FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20050 ras-related protein, putative, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20060 retrotransposon protein, putative, Ty3-gypsy subclass FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20070 retrotransposon protein, putative, unclassified FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20080 retrotransposon, putative, centromere-specific FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20090 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20100 glycerol-3-phosphate acyltransferase, putative, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20110 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20129 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20150 TKL_IRAK_CrRLK1L-1.11 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20170 retrotransposon protein, putative, Ty3-gypsy subclass FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20190 transposon protein, putative, unclassified FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20210 transposon protein, putative, unclassified FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20220 retrotransposon protein, putative, Ty3-gypsy subclass FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20240 retrotransposon protein, putative, unclassified FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20250 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20260 retrotransposon protein, putative, Ty3-gypsy subclass FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20304 expressed protein FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20320 expressed protein FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20330 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20340 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20350 expressed protein FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20370 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20380 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20390 transposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20400 transposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20410 retrotransposon protein, putative, Ty3-gypsy subclass FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20420 expressed protein FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20430 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20440 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20450 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20460 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20470 expressed protein FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20490 retrotransposon protein, putative, unclassified FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20520 retrotransposon protein, putative, Ty3-gypsy subclass FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20540 expressed protein FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20550 retrotransposon protein, putative, unclassified FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20560 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20570 invertase/pectin methylesterase inhibitor family protein, putative, expressed FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20590 expressed protein FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20600 retrotransposon, putative, centromere-specific FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20610 retrotransposon protein, putative, unclassified FN242-S Chr5 11689001 12094000 0 0 Deletion 405000 LOC_Os05g20620 retrotransposon protein, putative, unclassified, expressed FN242-S Chr5 11689675 Chr2 2127976 0 Translocation 0 LOC_Os02g04700 tRNA synthetases class II domain containing protein, expressed FN242-S Chr5 13112363 13112365 0 0 Deletion 2 FN242-S Chr5 3579783 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN242-S Chr5 9736845 G-C 0 0 Single Base Substitution 0 INTRON HET FN242-S Chr6 12675751 12675754 0 0 Deletion 3 FN242-S Chr6 9872543 9872605 0 0 Deletion 62 FN242-S Chr7 11347787 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN242-S Chr7 14036000 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g24670 retrotransposon protein, putative, Ty3-gypsy subclass FN242-S Chr7 1914112 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN242-S Chr7 21844642 21844643 0 0 Deletion 1 FN242-S Chr7 24665402 25778177 0 0 Inversion 1112775 LOC_Os07g41200 expressed protein FN242-S Chr7 24665402 25778177 0 0 Inversion 1112775 LOC_Os07g43030 calmodulin-binding transcription activator, putative, expressed FN242-S Chr8 2112794 2112796 0 0 Deletion 2 FN242-S Chr8 2244806 2244825 0 0 Deletion 19 FN242-S Chr8 7568771 9230699 0 0 Inversion 1661928 LOC_Os08g12780 chloroplast envelope membrane protein, putative, expressed FN242-S Chr8 8294523 Chr3 20721984 0 Translocation 0 LOC_Os03g37394 retrotransposon protein, putative, unclassified, expressed FN242-S Chr8 8294523 Chr3 20721984 0 Translocation 0 LOC_Os08g13880 expressed protein FN242-S Chr8 8297661 9230707 0 0 Inversion 933046 LOC_Os08g13880 expressed protein FN242-S Chr8 9943074 9945617 0 0 Deletion 2543 LOC_Os08g16290 retrotransposon protein, putative, unclassified, expressed