FN2429 Chr1 1272665 1272667 0 0 Deletion 2 Homo FN2429 Chr1 13634847 T-C 0 0 Single Base Substitution 0 Homo FN2429 Chr1 14918043 G-A 0 0 Single Base Substitution 0 HET FN2429 Chr1 16907493 16907495 0 0 Deletion 2 frameshift_variant HET LOC_Os01g30956 retrotransposon protein, putative, unclassified, expressed FN2429 Chr1 23047852 23047854 0 0 Insertion 2 HET FN2429 Chr1 28739177 28739178 0 0 Deletion 1 HET FN2429 Chr1 31479258 31479260 0 0 Insertion 2 HET FN2429 Chr1 4011933 4011935 0 0 Insertion 2 HET FN2429 Chr1 5474896 G-A 0 0 Single Base Substitution 0 HET FN2429 Chr1 6989650 T-C 0 0 Single Base Substitution 0 HET FN2429 Chr1 7168114 7168119 0 0 Deletion 5 Homo FN2429 Chr1 8210628 A-G 0 0 Single Base Substitution 0 HET FN2429 Chr10 22611062 C-A 0 0 Single Base Substitution 0 HET FN2429 Chr10 2552453 Chr4 3647951 0 Translocation 0 FN2429 Chr10 3816970 G-C 0 0 Single Base Substitution 0 HET FN2429 Chr11 13089001 13112000 0 0 Deletion 22999 LOC_Os11g22760 hypothetical protein FN2429 Chr11 13089001 13112000 0 0 Deletion 22999 LOC_Os11g22770 expressed protein FN2429 Chr11 13089001 13112000 0 0 Deletion 22999 LOC_Os11g22780 retrotransposon, putative, centromere-specific, expressed FN2429 Chr11 22828672 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g38530 retrotransposon protein, putative, unclassified, expressed FN2429 Chr11 22839470 22839476 0 0 Deletion 6 HET FN2429 Chr12 10056755 Chr7 21185092 0 Translocation 0 FN2429 Chr12 10056755 Chr7 21185092 0 Translocation 0 LOC_Os07g35430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2429 Chr12 10056765 Chr7 21183849 0 Translocation 0 FN2429 Chr12 11519557 A-C 0 0 Single Base Substitution 0 HET FN2429 Chr12 20982105 C-T 0 0 Single Base Substitution 0 HET FN2429 Chr12 3714621 Chr8 23923133 0 Translocation 0 FN2429 Chr12 3714623 Chr8 23930157 0 Translocation 0 FN2429 Chr12 3714623 Chr8 23930157 0 Translocation 0 LOC_Os08g37780 NOL1/NOP2/sun family protein, putative, expressed FN2429 Chr2 19871651 C-G 0 0 Single Base Substitution 0 Homo FN2429 Chr2 2313894 C-T 0 0 Single Base Substitution 0 HET FN2429 Chr2 26405622 T-A 0 0 Single Base Substitution 0 HET FN2429 Chr2 30276733 T-C 0 0 Single Base Substitution 0 HET FN2429 Chr2 7092403 G-T 0 0 Single Base Substitution 0 HET FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16020 conserved hypothetical protein FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16030 harpin-induced protein 1 domain containing protein, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16040 ubiquitin-conjugating enzyme, putative, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16050 transposon protein, putative, unclassified, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16060 RGA-1, putative, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16070 lr1 disease resistance protein, putative, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16080 retrotransposon protein, putative, unclassified, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16090 retrotransposon protein, putative, LINE subclass, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16100 xa1, putative, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16110 xa1, putative, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16140 transposon protein, putative, unclassified, expressed FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16150 retrotransposon protein, putative, Ty3-gypsy subclass FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16160 expressed protein FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16180 retrotransposon protein, putative, Ty3-gypsy subclass FN2429 Chr2 9096001 9204000 0 0 Deletion 107999 LOC_Os02g16190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2429 Chr2 9207001 9224000 0 0 Deletion 16999 LOC_Os02g16200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2429 Chr2 9207001 9224000 0 0 Deletion 16999 LOC_Os02g16210 transposon protein, putative, unclassified, expressed FN2429 Chr2 9207001 9224000 0 0 Deletion 16999 LOC_Os02g16220 expressed protein FN2429 Chr2 9207001 9224000 0 0 Deletion 16999 LOC_Os02g16230 expressed protein FN2429 Chr3 23384884 23384886 0 0 Deletion 2 Homo FN2429 Chr3 28312308 A-G 0 0 Single Base Substitution 0 Homo FN2429 Chr3 32684644 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g57300 expressed protein FN2429 Chr3 32684648 T-C 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR Homo LOC_Os03g57300 expressed protein FN2429 Chr3 36056148 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g63830 retrotransposon protein, putative, unclassified, expressed FN2429 Chr3 7073258 7073267 0 0 Deletion 9 Homo FN2429 Chr3 9570690 9570728 0 0 Insertion 38 HET FN2429 Chr4 11369687 A-G 0 0 Single Base Substitution 0 Homo FN2429 Chr4 13532525 A-C 0 0 Single Base Substitution 0 HET FN2429 Chr4 1721380 1721385 0 0 Deletion 5 Homo FN2429 Chr4 18926661 G-A 0 0 Single Base Substitution 0 HET FN2429 Chr4 26893015 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g45440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2429 Chr4 28828925 T-C 0 0 Single Base Substitution 0 HET FN2429 Chr4 5968996 T-C 0 0 Single Base Substitution 0 HET FN2429 Chr4 979558 979569 0 0 Deletion 11 Homo FN2429 Chr5 18009862 C-T 0 0 Single Base Substitution 0 Homo FN2429 Chr5 19918927 19918937 0 0 Deletion 10 frameshift_variant Homo LOC_Os05g33800 retrotransposon, putative, centromere-specific, expressed FN2429 Chr5 21113061 T-C 0 0 Single Base Substitution 0 Homo FN2429 Chr5 21113072 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g35520 deoxynucleoside kinase family, putative, expressed FN2429 Chr5 21113073 G-A 0 0 Single Base Substitution 0 Homo FN2429 Chr5 21113076 G-A 0 0 Single Base Substitution 0 Homo FN2429 Chr5 25451684 25451706 0 0 Deletion 22 Homo FN2429 Chr5 25587557 25587565 0 0 Deletion 8 Homo FN2429 Chr5 6405419 G-A 0 0 Single Base Substitution 0 Homo FN2429 Chr6 12225709 12225713 0 0 Deletion 4 frameshift_variant HET LOC_Os06g21160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2429 Chr6 17865173 17865176 0 0 Insertion 3 HET FN2429 Chr6 2103006 2103008 0 0 Deletion 2 HET FN2429 Chr6 4457664 C-T 0 0 Single Base Substitution 0 HET FN2429 Chr7 14114317 A-G 0 0 Single Base Substitution 0 HET FN2429 Chr7 224440 G-A 0 0 Single Base Substitution 0 HET FN2429 Chr7 28793574 28793581 0 0 Deletion 7 HET FN2429 Chr7 29285248 A-C 0 0 Single Base Substitution 0 Homo FN2429 Chr8 19322589 G-A 0 0 Single Base Substitution 0 HET FN2429 Chr8 19659144 G-A 0 0 Single Base Substitution 0 HET FN2429 Chr8 19854273 19854284 0 0 Deletion 11 HET FN2429 Chr8 19855094 T-C 0 0 Single Base Substitution 0 HET FN2429 Chr8 22657743 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g35930 OsFBL50 - F-box domain and LRR containing protein, expressed FN2429 Chr8 23923133 23999602 0 0 Inversion 0 FN2429 Chr8 23923133 23999602 0 0 Inversion 0 LOC_Os08g37890 expressed protein FN2429 Chr8 23930180 23999613 0 0 Inversion 0 LOC_Os08g37780 NOL1/NOP2/sun family protein, putative, expressed FN2429 Chr8 23930180 23999613 0 0 Inversion 0 LOC_Os08g37890 expressed protein FN2429 Chr8 27613375 C-T 0 0 Single Base Substitution 0 HET FN2429 Chr8 28338729 28338733 0 0 Deletion 4 HET FN2429 Chr8 8049933 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g13540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2429 Chr8 8711799 Chr3 8414050 0 Translocation 0 FN2429 Chr8 8711799 Chr3 8414050 0 Translocation 0 LOC_Os03g15380 expressed protein FN2429 Chr9 11480705 A-T 0 0 Single Base Substitution 0 Homo FN2429 Chr9 17273503 17273511 0 0 Deletion 8 HET FN2429 Chr9 19733711 G-T 0 0 Single Base Substitution 0 HET FN2429 Chr9 251041 G-T 0 0 Single Base Substitution 0 HET FN2429 Chr9 5772515 G-T 0 0 Single Base Substitution 0 HET FN2429 Chr9 6144438 6144439 0 0 Insertion 1 HET FN2429 Chr9 9144923 9144938 0 0 Deletion 15 Homo FN2429 Chr9 9298334 T-C 0 0 Single Base Substitution 0 Homo