FN2440 Chr1 11636794 G-C 0 0 Single Base Substitution 0 HET FN2440 Chr1 11764392 C-A 0 0 Single Base Substitution 0 HET FN2440 Chr1 14031736 14031753 0 0 Deletion 17 Homo FN2440 Chr1 29188520 C-T 0 0 Single Base Substitution 0 HET FN2440 Chr1 36578099 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g63120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr1 39153960 A-T 0 0 Single Base Substitution 0 HET FN2440 Chr1 6016343 G-T 0 0 Single Base Substitution 0 HET FN2440 Chr1 7995128 C-T 0 0 Single Base Substitution 0 HET FN2440 Chr10 12473061 T-C 0 0 Single Base Substitution 0 HET FN2440 Chr10 14813865 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g28470 retrotransposon protein, putative, unclassified, expressed FN2440 Chr10 16588864 T-C 0 0 Single Base Substitution 0 Homo FN2440 Chr10 16644708 16644710 0 0 Insertion 2 HET FN2440 Chr10 17124403 17124412 0 0 Deletion 9 disruptive_inframe_deletion HET LOC_Os10g32710 WD domain, G-beta repeat domain containing protein, expressed FN2440 Chr10 18809866 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g35210 expressed protein FN2440 Chr10 20588353 C-T 0 0 Single Base Substitution 0 HET FN2440 Chr10 21722210 21722212 0 0 Deletion 2 frameshift_variant Homo LOC_Os10g40559 exostosin family domain containing protein, expressed FN2440 Chr11 15241299 A-G 0 0 Single Base Substitution 0 HET FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27750 retrotransposon protein, putative, unclassified, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27780 retrotransposon protein, putative, Ty3-gypsy subclass FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27790 retrotransposon protein, putative, unclassified, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27795 expressed protein FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27799 expressed protein FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27810 retrotransposon protein, putative, unclassified, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27840 retrotransposon protein, putative, Ty3-gypsy subclass FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27860 retrotransposon protein, putative, Ty3-gypsy subclass FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27880 retrotransposon protein, putative, unclassified, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27890 retrotransposon protein, putative, Ty3-gypsy subclass FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27900 retrotransposon protein, putative, unclassified FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27930 hypothetical protein FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27940 expressed protein FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27970 glycine-rich cell wall structural protein 1 precursor, putative, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27980 lipase class 3 family protein, putative, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g27990 hypothetical protein FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28000 expressed protein FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28010 hypothetical protein FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28030 transposon protein, putative, CACTA, En/Spm sub-class FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28040 transposon protein, putative, CACTA, En/Spm sub-class FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28060 cytochrome P450, putative, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28065 cytochrome P450 71C1, putative, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28070 retrotransposon protein, putative, unclassified FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28080 expressed protein FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28104 TKL_IRAK_DUF26-lf.4 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28130 expressed protein FN2440 Chr11 15969001 16175000 0 0 Deletion 205999 LOC_Os11g28140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2440 Chr11 16181001 16207000 0 0 Deletion 25999 LOC_Os11g28150 transposon protein, putative, CACTA, En/Spm sub-class FN2440 Chr11 16181001 16207000 0 0 Deletion 25999 LOC_Os11g28170 expressed protein FN2440 Chr11 16181001 16207000 0 0 Deletion 25999 LOC_Os11g28184 expressed protein FN2440 Chr11 17285418 Chr5 14921559 0 Translocation 0 FN2440 Chr11 17285418 Chr5 14921559 0 Translocation 0 LOC_Os05g25660 expressed protein FN2440 Chr11 17285440 Chr5 14920630 0 Translocation 0 FN2440 Chr11 23000730 A-C 0 0 Single Base Substitution 0 Homo FN2440 Chr11 24808462 24808463 0 0 Deletion 1 Homo FN2440 Chr11 24877559 T-C 0 0 Single Base Substitution 0 Homo FN2440 Chr11 26479678 T-A 0 0 Single Base Substitution 0 Homo FN2440 Chr11 28681436 A-G 0 0 Single Base Substitution 0 HET FN2440 Chr11 4690594 G-T 0 0 Single Base Substitution 0 HET FN2440 Chr11 8374860 A-G 0 0 Single Base Substitution 0 HET FN2440 Chr12 12150956 12150964 0 0 Deletion 8 frameshift_variant HET LOC_Os12g21624 retrotransposon protein, putative, unclassified, expressed FN2440 Chr2 10562281 10562282 0 0 Insertion 1 HET FN2440 Chr2 10756220 10756221 0 0 Deletion 1 HET FN2440 Chr2 15443029 15443033 0 0 Deletion 4 HET FN2440 Chr2 16834154 T-C 0 0 Single Base Substitution 0 HET FN2440 Chr2 21995626 21995627 0 0 Deletion 1 frameshift_variant HET LOC_Os02g36414 transporter family protein, putative, expressed FN2440 Chr2 31485965 T-C 0 0 Single Base Substitution 0 HET FN2440 Chr2 31559558 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g51530 retrotransposon protein, putative, unclassified, expressed FN2440 Chr2 3214623 T-C 0 0 Single Base Substitution 0 HET FN2440 Chr2 34396684 C-A 0 0 Single Base Substitution 0 HET FN2440 Chr2 5274764 5274770 0 0 Deletion 6 HET FN2440 Chr3 10384718 A-C 0 0 Single Base Substitution 0 HET FN2440 Chr3 11651335 C-T 0 0 Single Base Substitution 0 Homo FN2440 Chr3 15162015 T-A 0 0 Single Base Substitution 0 Homo FN2440 Chr3 23269001 23306000 0 0 Deletion 36999 LOC_Os03g41910 hypothetical protein FN2440 Chr3 23269001 23306000 0 0 Deletion 36999 LOC_Os03g41920 expressed protein FN2440 Chr3 23269001 23306000 0 0 Deletion 36999 LOC_Os03g41932 expressed protein FN2440 Chr3 23269001 23306000 0 0 Deletion 36999 LOC_Os03g41940 expressed protein FN2440 Chr3 23269001 23306000 0 0 Deletion 36999 LOC_Os03g41960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr3 23780685 G-A 0 0 Single Base Substitution 0 HET FN2440 Chr3 31127909 31127916 0 0 Insertion 7 HET FN2440 Chr3 3202182 T-A 0 0 Single Base Substitution 0 HET FN2440 Chr3 34261916 34261922 0 0 Deletion 6 inframe_deletion Homo LOC_Os03g60240 SCAR-like protein 1, putative, expressed FN2440 Chr3 35535143 35535149 0 0 Insertion 6 HET FN2440 Chr4 10108036 C-T 0 0 Single Base Substitution 0 HET FN2440 Chr4 19829288 G-A 0 0 Single Base Substitution 0 HET FN2440 Chr4 22612168 A-C 0 0 Single Base Substitution 0 HET FN2440 Chr4 23281883 G-A 0 0 Single Base Substitution 0 HET FN2440 Chr4 28169102 28169103 0 0 Deletion 1 Homo FN2440 Chr4 29212795 29212797 0 0 Insertion 2 Homo FN2440 Chr4 31876511 31876512 0 0 Deletion 1 Homo FN2440 Chr4 7501459 7501472 0 0 Deletion 13 HET FN2440 Chr4 8637078 G-A 0 0 Single Base Substitution 0 HET FN2440 Chr5 10594627 T-G 0 0 Single Base Substitution 0 HET FN2440 Chr5 14921582 15910410 0 0 Inversion 0 LOC_Os05g25660 expressed protein FN2440 Chr5 15301639 G-A 0 0 Single Base Substitution 0 HET FN2440 Chr5 15586230 Chr1 39146568 0 Translocation 0 LOC_Os05g26850 hypothetical protein FN2440 Chr5 15902290 15903203 0 0 Inversion 0 FN2440 Chr5 15903205 16215708 0 0 Inversion 0 FN2440 Chr5 1914928 A-G 0 0 Single Base Substitution 0 HET FN2440 Chr5 21725010 C-T 0 0 Single Base Substitution 0 HET FN2440 Chr5 237660 G-T 0 0 Single Base Substitution 0 HET FN2440 Chr5 25624708 25624711 0 0 Deletion 3 HET FN2440 Chr5 26775023 A-T 0 0 Single Base Substitution 0 HET FN2440 Chr5 6508760 G-A 0 0 Single Base Substitution 0 HET FN2440 Chr5 9026728 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2440 Chr5 9285883 C-A 0 0 Single Base Substitution 0 Homo FN2440 Chr6 11232197 G-T 0 0 Single Base Substitution 0 HET FN2440 Chr6 13885815 G-A 0 0 Single Base Substitution 0 HET FN2440 Chr6 15911333 Chr5 4678636 0 Translocation 0 LOC_Os06g28040 retrotransposon, putative, centromere-specific FN2440 Chr6 27766787 27766789 0 0 Insertion 2 HET FN2440 Chr6 30943596 T-A 0 0 Single Base Substitution 0 HET FN2440 Chr6 31060911 C-T 0 0 Single Base Substitution 0 HET FN2440 Chr6 4473539 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g08890 glutamate receptor 3.4 precursor, putative, expressed FN2440 Chr6 5084934 5084946 0 0 Deletion 12 HET FN2440 Chr6 8136425 G-A 0 0 Single Base Substitution 0 HET FN2440 Chr7 10473080 T-G 0 0 Single Base Substitution 0 HET FN2440 Chr7 12793001 12808000 0 0 Deletion 14999 LOC_Os07g22710 CAMK_CAMK_like.32 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2440 Chr7 12811227 12811228 0 0 Deletion 1 Homo FN2440 Chr7 20337208 20502930 0 0 Inversion 0 FN2440 Chr7 20337208 20502930 0 0 Inversion 0 LOC_Os07g34250 peptidase aspartic family protein, putative, expressed FN2440 Chr7 3187676 C-T 0 0 Single Base Substitution 0 Homo FN2440 Chr7 5800924 Chr3 24163935 0 Translocation 0 LOC_Os07g10680 polygalacturonase, putative, expressed FN2440 Chr7 5800927 Chr3 24165770 0 Translocation 0 LOC_Os07g10680 polygalacturonase, putative, expressed FN2440 Chr7 8472906 T-G 0 0 Single Base Substitution 0 Homo FN2440 Chr8 11068783 C-T 0 0 Single Base Substitution 0 Homo FN2440 Chr8 27655991 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g43810 carrier, putative, expressed FN2440 Chr8 27656283 27656284 0 0 Deletion 1 frameshift_variant Homo LOC_Os08g43810 carrier, putative, expressed FN2440 Chr8 5394581 C-T 0 0 Single Base Substitution 0 Homo FN2440 Chr9 14322247 14322252 0 0 Deletion 5 Homo FN2440 Chr9 16451398 C-T 0 0 Single Base Substitution 0 HET FN2440 Chr9 21313569 21313572 0 0 Deletion 3 inframe_deletion HET LOC_Os09g36940 plastocyanin-like domain containing protein, putative, expressed FN2440 Chr9 4261660 C-A 0 0 Single Base Substitution 0 HET