FN2462 Chr1 15043653 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g27000 retrotransposon protein, putative, unclassified, expressed FN2462 Chr1 2507302 2507304 0 0 Deletion 2 frameshift_variant HET LOC_Os01g05320 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2462 Chr1 29673077 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g51634 myosin-2 heavy chain, non muscle, putative, expressed FN2462 Chr1 32395790 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g56250 transposon protein, putative, unclassified, expressed FN2462 Chr1 38412441 38412444 0 0 Deletion 3 disruptive_inframe_deletion Homo LOC_Os01g66130 armadillo/beta-catenin repeat family protein, putative, expressed FN2462 Chr1 40131960 40131963 0 0 Deletion 3 inframe_deletion Homo LOC_Os01g69050 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed FN2462 Chr1 40684890 40684899 0 0 Deletion 9 HET FN2462 Chr10 13654772 G-T 0 0 Single Base Substitution 0 HET FN2462 Chr10 14159108 C-T 0 0 Single Base Substitution 0 Homo FN2462 Chr10 14159109 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g26920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr10 2684557 T-A 0 0 Single Base Substitution 0 HET FN2462 Chr10 9661047 T-A 0 0 Single Base Substitution 0 HET FN2462 Chr11 10164562 C-A 0 0 Single Base Substitution 0 HET FN2462 Chr11 15242534 C-T 0 0 Single Base Substitution 0 Homo FN2462 Chr11 16289665 16289668 0 0 Deletion 3 Homo FN2462 Chr11 17108731 17108732 0 0 Deletion 1 Homo FN2462 Chr11 17789173 A-T 0 0 Single Base Substitution 0 HET FN2462 Chr11 18767699 C-T 0 0 Single Base Substitution 0 Homo FN2462 Chr11 24651582 24651587 0 0 Deletion 5 HET FN2462 Chr11 368917 368918 0 0 Insertion 1 HET FN2462 Chr11 873394 T-C 0 0 Single Base Substitution 0 HET FN2462 Chr11 9444955 9444968 0 0 Deletion 13 HET FN2462 Chr12 10174306 Chr4 8429189 0 Translocation 0 FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21870 type II intron maturase protein, putative, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21880 OsMADS74 - MADS-box family gene with M-alpha type-box, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21890 PTEN, putative, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21900 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21910 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21920 expressed protein FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21930 PPR repeat containing protein, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21940 expressed protein FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21950 expressed protein FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21960 hypothetical protein FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21970 retrotransposon, putative, centromere-specific FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21980 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g21990 retrotransposon protein, putative, Ty3-gypsy subclass FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22020 expressed protein FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22030 serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22040 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22050 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22060 expressed protein FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22070 retrotransposon protein, putative, Ty3-gypsy subclass FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22090 expressed protein FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22110 ABC-2 type transporter, putative, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22120 white-brown complex homolog protein 11, putative, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22140 glycerol 3-phosphate permease, putative, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22145 expressed protein FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22150 transposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22160 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22170 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22180 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22190 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22200 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22210 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22220 expressed protein FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22230 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22240 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 12316001 12539000 0 0 Deletion 222999 LOC_Os12g22250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22820 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22830 retrotransposon protein, putative, Ty1-copia subclass FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22839 expressed protein FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22850 expressed protein FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22860 hypothetical protein FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22870 expressed protein FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22880 expressed protein FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22890 transposon protein, putative, CACTA, En/Spm sub-class FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22900 transposon protein, putative, CACTA, En/Spm sub-class FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22920 expressed protein FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22940 no apical meristem protein, putative, expressed FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22960 retrotransposon protein, putative, Ty3-gypsy subclass FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22970 expressed protein FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 12875001 13001000 0 0 Deletion 125999 LOC_Os12g22990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13004001 13051000 0 0 Deletion 46999 LOC_Os12g23010 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 13004001 13051000 0 0 Deletion 46999 LOC_Os12g23030 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 13004001 13051000 0 0 Deletion 46999 LOC_Os12g23040 transposon protein, putative, Mutator sub-class, expressed FN2462 Chr12 13004001 13051000 0 0 Deletion 46999 LOC_Os12g23060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13004001 13051000 0 0 Deletion 46999 LOC_Os12g23070 retrotransposon protein, putative, Ty3-gypsy subclass FN2462 Chr12 13004001 13051000 0 0 Deletion 46999 LOC_Os12g23080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23090 no apical meristem protein, putative, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23100 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23110 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23150 4-nitrophenylphosphatase-like, putative, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23160 hypothetical protein FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23170 Os12bglu38 - beta-glucosidase/beta-mannosidase/exoglucanase homologue, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23180 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23190 tyrosine phosphatase family protein, putative, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23200 photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23210 expressed protein FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13054001 13134000 0 0 Deletion 79999 LOC_Os12g23230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23260 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23280 heavy metal-associated domain containing protein, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23300 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23310 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23320 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23330 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23340 retrotransposon protein, putative, unclassified FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23350 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23360 retrotransposon protein, putative, unclassified FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23374 retrotransposon protein, putative, unclassified FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23390 retrotransposon protein, putative, unclassified FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23400 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23430 transposon protein, putative, Ac/Ds sub-class, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23450 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23460 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23470 retrotransposon protein, putative, unclassified FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23490 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23500 retrotransposon protein, putative, unclassified FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23510 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23514 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23540 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23550 expressed protein FN2462 Chr12 13154001 13339000 0 0 Deletion 184999 LOC_Os12g23560 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 13424001 13463000 0 0 Deletion 38999 LOC_Os12g23650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13424001 13463000 0 0 Deletion 38999 LOC_Os12g23660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 13424001 13463000 0 0 Deletion 38999 LOC_Os12g23670 expressed protein FN2462 Chr12 13424001 13463000 0 0 Deletion 38999 LOC_Os12g23680 hypothetical protein FN2462 Chr12 13424001 13463000 0 0 Deletion 38999 LOC_Os12g23690 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 13424001 13463000 0 0 Deletion 38999 LOC_Os12g23700 cyclin-dependent kinase G-2, putative, expressed FN2462 Chr12 13424001 13463000 0 0 Deletion 38999 LOC_Os12g23710 expressed protein FN2462 Chr12 13424001 13463000 0 0 Deletion 38999 LOC_Os12g23720 retrotransposon protein, putative, unclassified, expressed FN2462 Chr12 14585014 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g25320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2462 Chr12 14705801 Chr3 8253738 0 Translocation 0 FN2462 Chr12 15582537 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g26610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2462 Chr12 27052698 Chr4 11544347 0 Translocation 0 LOC_Os12g43590 FAD dependent oxidoreductase domain containing protein, expressed FN2462 Chr12 27422282 C-A 0 0 Single Base Substitution 0 HET FN2462 Chr2 1178242 G-T 0 0 Single Base Substitution 0 HET FN2462 Chr2 13591144 C-T 0 0 Single Base Substitution 0 HET FN2462 Chr2 13867335 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g23939 expressed protein FN2462 Chr2 18540807 C-T 0 0 Single Base Substitution 0 HET FN2462 Chr2 23195903 G-A 0 0 Single Base Substitution 0 HET FN2462 Chr2 29830543 C-T 0 0 Single Base Substitution 0 HET FN2462 Chr2 31044923 C-T 0 0 Single Base Substitution 0 HET FN2462 Chr2 7637410 G-A 0 0 Single Base Substitution 0 HET FN2462 Chr3 14330610 14330622 0 0 Deletion 12 Homo FN2462 Chr3 1757169 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g03870 DNA-binding bromodomain-containing protein, putative, expressed FN2462 Chr3 1757170 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g03870 DNA-binding bromodomain-containing protein, putative, expressed FN2462 Chr3 2082047 T-G 0 0 Single Base Substitution 0 HET FN2462 Chr3 23537559 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g42290 B3 DNA binding domain containing protein, expressed FN2462 Chr3 28866596 A-T 0 0 Single Base Substitution 0 Homo FN2462 Chr3 3895807 3895808 0 0 Insertion 1 frameshift_variant&stop_gained HET LOC_Os03g07670 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2462 Chr4 11149944 T-A 0 0 Single Base Substitution 0 Homo FN2462 Chr4 13771712 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g24110 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN2462 Chr4 14237929 14237930 0 0 Deletion 1 HET FN2462 Chr4 15128357 C-A 0 0 Single Base Substitution 0 HET FN2462 Chr4 20381031 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g33650 expressed protein FN2462 Chr4 7839501 C-T 0 0 Single Base Substitution 0 HET FN2462 Chr5 12062597 G-A 0 0 Single Base Substitution 0 Homo FN2462 Chr5 12136281 G-T 0 0 Single Base Substitution 0 Homo FN2462 Chr5 24773516 C-G 0 0 Single Base Substitution 0 HET FN2462 Chr5 29750809 G-A 0 0 Single Base Substitution 0 Homo FN2462 Chr5 4617853 4617854 0 0 Deletion 1 HET FN2462 Chr5 9163394 G-T 0 0 Single Base Substitution 0 HET FN2462 Chr6 12605210 C-A 0 0 Single Base Substitution 0 HET FN2462 Chr6 20446344 T-C 0 0 Single Base Substitution 0 HET FN2462 Chr6 21426890 A-G 0 0 Single Base Substitution 0 HET FN2462 Chr6 27804227 27804234 0 0 Deletion 7 HET FN2462 Chr6 5752925 A-G 0 0 Single Base Substitution 0 HET FN2462 Chr7 10473927 T-A 0 0 Single Base Substitution 0 HET FN2462 Chr7 17560179 17560181 0 0 Insertion 2 HET FN2462 Chr7 21888529 T-A 0 0 Single Base Substitution 0 HET FN2462 Chr7 22807200 A-T 0 0 Single Base Substitution 0 HET FN2462 Chr7 23591489 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g39380 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2462 Chr7 8391781 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g14710 transposon protein, putative, Mariner sub-class, expressed FN2462 Chr8 15818673 C-G 0 0 Single Base Substitution 0 HET FN2462 Chr8 24786560 C-A 0 0 Single Base Substitution 0 HET FN2462 Chr8 25082588 Chr4 19215213 0 Translocation 0 FN2462 Chr8 4724644 A-G 0 0 Single Base Substitution 0 HET FN2462 Chr8 6333852 G-T 0 0 Single Base Substitution 0 HET FN2462 Chr8 8464265 G-A 0 0 Single Base Substitution 0 HET FN2462 Chr9 12225283 12225284 0 0 Deletion 1 HET FN2462 Chr9 1298238 Chr7 19657642 0 Translocation 0 FN2462 Chr9 1310136 Chr8 2941961 0 Translocation 0 LOC_Os09g02810 CCAAT/enhancer-binding protein, putative, expressed FN2462 Chr9 1311709 Chr8 2941966 0 Translocation 0 LOC_Os09g02810 CCAAT/enhancer-binding protein, putative, expressed FN2462 Chr9 15257859 C-G 0 0 Single Base Substitution 0 HET FN2462 Chr9 15708809 Chr7 23243225 0 Translocation 0