FN2485 Chr1 21088552 C-A 0 0 Single Base Substitution 0 HET FN2485 Chr1 27704866 G-C 0 0 Single Base Substitution 0 HET FN2485 Chr1 30010551 G-A 0 0 Single Base Substitution 0 HET FN2485 Chr1 30010552 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g52170 expressed protein FN2485 Chr1 36211166 A-G 0 0 Single Base Substitution 0 HET FN2485 Chr1 3719129 A-G 0 0 Single Base Substitution 0 HET FN2485 Chr1 37861161 37861162 0 0 Deletion 1 frameshift_variant HET LOC_Os01g65240 transposon protein, putative, Pong sub-class, expressed FN2485 Chr1 38274510 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g65904 expressed protein FN2485 Chr10 10054784 10054785 0 0 Insertion 1 HET FN2485 Chr10 2239005 Chr1 2819544 0 Translocation 0 FN2485 Chr10 2732001 2755000 0 0 Deletion 22999 LOC_Os10g05520 OsFBX371 - F-box domain containing protein, expressed FN2485 Chr10 2732001 2755000 0 0 Deletion 22999 LOC_Os10g05530 OsFBX372 - F-box domain containing protein, expressed FN2485 Chr10 2732001 2755000 0 0 Deletion 22999 LOC_Os10g05540 OsFBX373 - F-box domain containing protein, expressed FN2485 Chr10 2732001 2755000 0 0 Deletion 22999 LOC_Os10g05550 expressed protein FN2485 Chr10 2761381 2762165 0 0 Inversion 0 LOC_Os10g05560 expressed protein FN2485 Chr10 3383180 T-A 0 0 Single Base Substitution 0 Homo FN2485 Chr10 5324440 G-A 0 0 Single Base Substitution 0 Homo FN2485 Chr10 5985524 5985525 0 0 Insertion 1 HET FN2485 Chr11 11165665 11165671 0 0 Deletion 6 disruptive_inframe_deletion Homo LOC_Os11g19420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2485 Chr11 16749525 G-A 0 0 Single Base Substitution 0 Homo FN2485 Chr11 22131471 Chr7 11905179 0 Translocation 0 FN2485 Chr11 3630102 Chr2 24318498 0 Translocation 0 LOC_Os02g40180 receptor-like protein kinase 5 precursor, putative, expressed FN2485 Chr11 3630102 Chr2 24318498 0 Translocation 0 LOC_Os11g07225 expressed protein FN2485 Chr11 3819558 T-A 0 0 Single Base Substitution 0 Homo FN2485 Chr12 16714001 16781000 0 0 Deletion 66999 LOC_Os12g28280 retrotransposon protein, putative, unclassified, expressed FN2485 Chr12 16714001 16781000 0 0 Deletion 66999 LOC_Os12g28290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2485 Chr12 16714001 16781000 0 0 Deletion 66999 LOC_Os12g28300 expressed protein FN2485 Chr12 16714001 16781000 0 0 Deletion 66999 LOC_Os12g28310 hypothetical protein FN2485 Chr12 16714001 16781000 0 0 Deletion 66999 LOC_Os12g28330 retrotransposon protein, putative, unclassified, expressed FN2485 Chr12 16714001 16781000 0 0 Deletion 66999 LOC_Os12g28340 retrotransposon protein, putative, unclassified, expressed FN2485 Chr12 16714001 16781000 0 0 Deletion 66999 LOC_Os12g28350 transposon protein, putative, CACTA, En/Spm sub-class FN2485 Chr12 16714001 16781000 0 0 Deletion 66999 LOC_Os12g28360 retrotransposon protein, putative, unclassified, expressed FN2485 Chr12 16714001 16781000 0 0 Deletion 66999 LOC_Os12g28370 expressed protein FN2485 Chr12 17405505 T-C 0 0 Single Base Substitution 0 Homo FN2485 Chr12 23455244 23455246 0 0 Deletion 2 Homo FN2485 Chr12 23684507 Chr1 14833841 0 Translocation 0 FN2485 Chr12 8122896 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g14270 retrotransposon protein, putative, unclassified, expressed FN2485 Chr2 11557591 C-A 0 0 Single Base Substitution 0 HET FN2485 Chr2 27204171 27204179 0 0 Deletion 8 Homo FN2485 Chr2 27205565 T-A 0 0 Single Base Substitution 0 Homo FN2485 Chr2 27398871 27398883 0 0 Deletion 12 Homo FN2485 Chr2 27591557 27591560 0 0 Deletion 3 inframe_deletion Homo LOC_Os02g45380 MATE domain containing protein, expressed FN2485 Chr2 28727578 G-T 0 0 Single Base Substitution 0 Homo FN2485 Chr2 30588927 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g50090 retrotransposon protein, putative, unclassified, expressed FN2485 Chr2 4396816 4396818 0 0 Insertion 2 Homo FN2485 Chr2 5617126 G-A 0 0 Single Base Substitution 0 Homo FN2485 Chr3 11988939 G-A 0 0 Single Base Substitution 0 Homo FN2485 Chr3 19644427 T-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os03g35430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2485 Chr3 28252397 28252398 0 0 Deletion 1 frameshift_variant Homo LOC_Os03g49610 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed FN2485 Chr3 30371667 C-G 0 0 Single Base Substitution 0 HET FN2485 Chr3 3485630 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g06890 DUF593 domain containing protein, expressed FN2485 Chr3 3485632 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g06890 DUF593 domain containing protein, expressed FN2485 Chr3 36141704 36141706 0 0 Deletion 2 HET FN2485 Chr4 13059975 T-G 0 0 Single Base Substitution 0 HET FN2485 Chr4 24179144 A-T 0 0 Single Base Substitution 0 HET FN2485 Chr4 2543333 A-G 0 0 Single Base Substitution 0 HET FN2485 Chr4 26538894 C-T 0 0 Single Base Substitution 0 HET FN2485 Chr4 31585635 T-A 0 0 Single Base Substitution 0 HET FN2485 Chr4 6208089 G-T 0 0 Single Base Substitution 0 HET FN2485 Chr5 10130084 C-T 0 0 Single Base Substitution 0 Homo FN2485 Chr5 10916162 10916163 0 0 Deletion 1 Homo FN2485 Chr5 12232953 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g20830 retrotransposon protein, putative, unclassified, expressed FN2485 Chr5 19326027 19326028 0 0 Deletion 1 HET FN2485 Chr5 19793092 T-C 0 0 Single Base Substitution 0 Homo FN2485 Chr5 21268343 C-A 0 0 Single Base Substitution 0 HET FN2485 Chr5 21772839 21772840 0 0 Deletion 1 Homo FN2485 Chr5 29536988 29536991 0 0 Insertion 3 HET FN2485 Chr5 8713845 8713849 0 0 Deletion 4 HET FN2485 Chr6 12961714 C-T 0 0 Single Base Substitution 0 HET FN2485 Chr6 17263294 T-A 0 0 Single Base Substitution 0 HET FN2485 Chr6 30350473 G-A 0 0 Single Base Substitution 0 HET FN2485 Chr6 4641327 4641331 0 0 Deletion 4 HET FN2485 Chr6 4804024 G-T 0 0 Single Base Substitution 0 HET FN2485 Chr6 9221431 A-G 0 0 Single Base Substitution 0 HET FN2485 Chr7 12747002 T-C 0 0 Single Base Substitution 0 HET FN2485 Chr7 13180431 T-C 0 0 Single Base Substitution 0 HET FN2485 Chr7 13875001 13907000 0 0 Deletion 31999 LOC_Os07g24380 retrotransposon protein, putative, unclassified FN2485 Chr7 13875001 13907000 0 0 Deletion 31999 LOC_Os07g24390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2485 Chr7 13875001 13907000 0 0 Deletion 31999 LOC_Os07g24400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2485 Chr7 13875001 13907000 0 0 Deletion 31999 LOC_Os07g24410 retrotransposon protein, putative, unclassified FN2485 Chr7 13875001 13907000 0 0 Deletion 31999 LOC_Os07g24420 retrotransposon protein, putative, Ty3-gypsy subclass FN2485 Chr7 14767001 14777000 0 0 Deletion 9999 LOC_Os07g25730 expressed protein FN2485 Chr7 14767001 14777000 0 0 Deletion 9999 LOC_Os07g25740 expressed protein FN2485 Chr7 19100873 20069195 0 0 Inversion 0 LOC_Os07g32170 OsSPL13 - SBP-box gene family member, expressed FN2485 Chr7 19100898 20069198 0 0 Inversion 0 LOC_Os07g32170 OsSPL13 - SBP-box gene family member, expressed FN2485 Chr7 23855936 G-A 0 0 Single Base Substitution 0 Homo FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05690 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05700 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05710 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05720 TCP family transcription factor, putative, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05740 receptor-like protein kinase 2 precursor, putative, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05760 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05770 transposon protein, putative, unclassified, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05780 conserved hypothetical protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05790 retrotransposon protein, putative, unclassified, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05800 glutathione S-transferase, N-terminal domain containing protein, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05810 glycine-rich protein, putative, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05820 hydroxyacid oxidase 1, putative, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05830 zinc-finger protein, putative, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05840 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05870 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05880 OsFBK18 - F-box domain and kelch repeat containing protein, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05890 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05900 ZOS7-02 - C2H2 zinc finger protein, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05910 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05920 retrotransposon protein, putative, unclassified FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05930 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05940 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05950 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05960 expressed protein FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05970 ligA, putative, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g05984 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g06000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g06010 transposon protein, putative, unclassified FN2485 Chr7 2719001 2917000 0 0 Deletion 197999 LOC_Os07g06020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2485 Chr7 3287861 G-A 0 0 Single Base Substitution 0 HET FN2485 Chr8 17948281 17948282 0 0 Deletion 1 HET FN2485 Chr8 17948674 A-T 0 0 Single Base Substitution 0 HET FN2485 Chr8 18565123 C-A 0 0 Single Base Substitution 0 Homo FN2485 Chr8 27341583 A-T 0 0 Single Base Substitution 0 HET FN2485 Chr8 8732669 8732670 0 0 Insertion 1 HET FN2485 Chr9 11247129 C-T 0 0 Single Base Substitution 0 HET FN2485 Chr9 12264738 T-C 0 0 Single Base Substitution 0 HET FN2485 Chr9 13155528 13155529 0 0 Deletion 1 frameshift_variant HET LOC_Os09g21710 AN1-like zinc finger domain containing protein, expressed FN2485 Chr9 17664849 G-A 0 0 Single Base Substitution 0 HET FN2485 Chr9 20671038 T-A 0 0 Single Base Substitution 0 HET FN2485 Chr9 21552287 Chr2 34253056 0 Translocation 0 LOC_Os09g37310 retrotransposon protein, putative, unclassified, expressed FN2485 Chr9 22856146 22856164 0 0 Deletion 18 frameshift_variant&splice_donor_variant&splice_region_variant&intron_variant Homo LOC_Os09g39870 2-phosphoglycerate kinase-related, putative, expressed FN2485 Chr9 2286908 C-T 0 0 Single Base Substitution 0 HET FN2485 Chr9 6312484 C-T 0 0 Single Base Substitution 0 Homo FN2485 Chr9 8406220 Chr6 11805215 0 Translocation 0 FN2485 Chr9 9070708 G-T 0 0 Single Base Substitution 0 HET FN2485 Chr9 9677571 T-C 0 0 Single Base Substitution 0 HET