FN2500 Chr1 10195131 G-A 0 0 Single Base Substitution 0 HET FN2500 Chr1 28804740 A-T 0 0 Single Base Substitution 0 HET FN2500 Chr1 30567577 30567579 0 0 Deletion 2 HET FN2500 Chr1 9089141 C-A 0 0 Single Base Substitution 0 HET FN2500 Chr1 9706696 A-T 0 0 Single Base Substitution 0 HET FN2500 Chr10 13964139 G-A 0 0 Single Base Substitution 0 HET FN2500 Chr10 20244847 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os10g37820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2500 Chr10 21650102 A-C 0 0 Single Base Substitution 0 Homo FN2500 Chr10 6376855 6639301 0 0 Inversion 0 FN2500 Chr10 6376857 6639308 0 0 Inversion 0 FN2500 Chr10 6669388 G-A 0 0 Single Base Substitution 0 Homo FN2500 Chr10 6821143 6821144 0 0 Deletion 1 HET FN2500 Chr11 10286857 10403590 0 0 Inversion 0 FN2500 Chr11 10286857 10403590 0 0 Inversion 0 LOC_Os11g18450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2500 Chr11 10286871 10403601 0 0 Inversion 0 FN2500 Chr11 10286871 10403601 0 0 Inversion 0 LOC_Os11g18450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2500 Chr11 17989059 17989060 0 0 Insertion 1 HET FN2500 Chr11 28245315 Chr8 13852230 0 Translocation 0 FN2500 Chr12 10139974 T-A 0 0 Single Base Substitution 0 HET FN2500 Chr12 16188815 16188833 0 0 Deletion 18 HET FN2500 Chr12 24160403 Chr3 8413587 0 Translocation 0 FN2500 Chr12 24160403 Chr3 8413587 0 Translocation 0 LOC_Os03g15380 expressed protein FN2500 Chr12 26757684 26757690 0 0 Insertion 6 disruptive_inframe_insertion HET LOC_Os12g43090 expressed protein FN2500 Chr12 5178208 5178218 0 0 Deletion 10 HET FN2500 Chr12 7560545 C-T 0 0 Single Base Substitution 0 HET FN2500 Chr2 12208436 C-T 0 0 Single Base Substitution 0 Homo FN2500 Chr2 16982001 17005000 0 0 Deletion 22999 LOC_Os02g28720 spotted leaf 11, putative, expressed FN2500 Chr2 16982001 17005000 0 0 Deletion 22999 LOC_Os02g28730 expressed protein FN2500 Chr2 21739163 T-C 0 0 Single Base Substitution 0 HET FN2500 Chr2 21883707 G-T 0 0 Single Base Substitution 0 HET FN2500 Chr2 26073338 A-G 0 0 Single Base Substitution 0 HET FN2500 Chr2 27529231 A-T 0 0 Single Base Substitution 0 HET FN2500 Chr2 33083939 33083942 0 0 Insertion 3 HET FN2500 Chr2 35484242 35484243 0 0 Deletion 1 HET FN2500 Chr2 4530868 4530870 0 0 Insertion 2 HET FN2500 Chr3 15587520 A-G 0 0 Single Base Substitution 0 Homo FN2500 Chr3 15587527 A-C 0 0 Single Base Substitution 0 Homo FN2500 Chr3 18041546 A-G 0 0 Single Base Substitution 0 Homo FN2500 Chr3 23237599 T-A 0 0 Single Base Substitution 0 Homo FN2500 Chr3 25244656 C-T 0 0 Single Base Substitution 0 Homo FN2500 Chr3 3399365 C-T 0 0 Single Base Substitution 0 HET FN2500 Chr3 7319418 G-A 0 0 Single Base Substitution 0 HET FN2500 Chr4 13330457 G-A 0 0 Single Base Substitution 0 HET FN2500 Chr4 13595589 G-A 0 0 Single Base Substitution 0 HET FN2500 Chr4 17684521 C-A 0 0 Single Base Substitution 0 HET FN2500 Chr4 19473797 19473799 0 0 Insertion 2 HET FN2500 Chr4 2085577 Chr1 27847924 0 Translocation 0 FN2500 Chr4 30650849 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g51720 retrotransposon protein, putative, unclassified, expressed FN2500 Chr4 31192815 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g52460 retrotransposon protein, putative, unclassified, expressed FN2500 Chr4 7994026 A-G 0 0 Single Base Substitution 0 HET FN2500 Chr5 23541874 T-A 0 0 Single Base Substitution 0 HET FN2500 Chr5 6038440 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g10890 retrotransposon protein, putative, unclassified, expressed FN2500 Chr5 6377352 7201870 0 0 Inversion 0 FN2500 Chr5 6377352 7201870 0 0 Inversion 0 LOC_Os05g12550 retrotransposon, putative, centromere-specific, expressed FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12360 retrotransposon protein, putative, unclassified, expressed FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12370 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12380 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12390 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12400 BURP domain containing protein, expressed FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12410 BURP domain containing protein, expressed FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12420 retrotransposon protein, putative, Ty3-gypsy subclass FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12430 hypothetical protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12440 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12450 hydroquinone glucosyltransferase, putative, expressed FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12460 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12474 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12481 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12490 transporter-related, putative, expressed FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12500 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12510 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12540 expressed protein FN2500 Chr5 7110001 7205000 0 0 Deletion 94999 LOC_Os05g12550 retrotransposon, putative, centromere-specific, expressed FN2500 Chr6 11151693 G-A 0 0 Single Base Substitution 0 HET FN2500 Chr6 21292380 A-G 0 0 Single Base Substitution 0 HET FN2500 Chr6 22068383 A-G 0 0 Single Base Substitution 0 HET FN2500 Chr6 23038869 C-T 0 0 Single Base Substitution 0 HET FN2500 Chr6 24074455 A-G 0 0 Single Base Substitution 0 HET FN2500 Chr6 27065569 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g44800 transposon protein, putative, Ac/Ds sub-class, expressed FN2500 Chr6 29893504 T-A 0 0 Single Base Substitution 0 HET FN2500 Chr7 10461287 C-A 0 0 Single Base Substitution 0 HET FN2500 Chr7 23240295 C-T 0 0 Single Base Substitution 0 HET FN2500 Chr7 25518323 T-C 0 0 Single Base Substitution 0 HET FN2500 Chr7 5477897 C-G 0 0 Single Base Substitution 0 HET FN2500 Chr7 9985172 10157097 0 0 Inversion 0 LOC_Os07g16970 rab GDP dissociation inhibitor alpha, putative, expressed FN2500 Chr7 9985172 10157097 0 0 Inversion 0 LOC_Os07g17230 WRKY123, expressed FN2500 Chr7 9985180 10157100 0 0 Inversion 0 LOC_Os07g16970 rab GDP dissociation inhibitor alpha, putative, expressed FN2500 Chr7 9985180 10157100 0 0 Inversion 0 LOC_Os07g17230 WRKY123, expressed FN2500 Chr8 11209419 11210414 0 0 Deletion 995 stop_lost&inframe_deletion&splice_region_variant HET LOC_Os08g18780 retrotransposon protein, putative, unclassified, expressed FN2500 Chr8 12434533 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g20690 retrotransposon protein, putative, unclassified, expressed FN2500 Chr8 13381230 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g22180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2500 Chr8 27115755 27211343 0 0 Inversion 0 LOC_Os08g42880 expressed protein FN2500 Chr8 27115755 27211343 0 0 Inversion 0 LOC_Os08g43060 expressed protein FN2500 Chr8 27115757 27211341 0 0 Inversion 0 LOC_Os08g42880 expressed protein FN2500 Chr8 27115757 27211341 0 0 Inversion 0 LOC_Os08g43060 expressed protein FN2500 Chr8 9757952 T-A 0 0 Single Base Substitution 0 HET FN2500 Chr9 16231213 16231214 0 0 Deletion 1 HET FN2500 Chr9 4108822 Chr3 24004088 0 Translocation 0 FN2500 Chr9 7522395 C-T 0 0 Single Base Substitution 0 Homo