FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23870 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23880 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23890 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23900 retrotransposon protein, putative, unclassified, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23910 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23920 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23930 transposon protein, putative, unclassified, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23940 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23970 cysteine-rich receptor protein kinase, putative, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g23990 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24010 pleiotropic drug resistance protein, putative, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24020 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24030 AMP-binding enzyme, putative, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24040 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24050 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24060 importin subunit alpha, putative, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24070 GATA zinc finger domain containing protein, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24080 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24090 TPR repeat, putative, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24100 transposon protein, putative, unclassified, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24110 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24120 hypothetical protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24150 hypothetical protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24160 hypothetical protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24170 hypothetical protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24180 retrotransposon protein, putative, unclassified FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24190 retrotransposon protein, putative, unclassified FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24200 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24210 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24220 retrotransposon protein, putative, Ty1-copia subclass FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24230 retrotransposon, putative, centromere-specific FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24240 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24260 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24270 hypothetical protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24280 retrotransposon protein, putative, unclassified, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24294 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24310 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24320 retrotransposon protein, putative, unclassified, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24330 retrotransposon protein, putative, unclassified, expressed FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24340 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24350 expressed protein FN2531-S Chr1 13435001 13739000 0 0 Deletion 303999 LOC_Os01g24360 retrotransposon protein, putative, unclassified FN2531-S Chr1 13987804 T-A 0 0 Single Base Substitution 0 Homo FN2531-S Chr1 16889877 16889879 0 0 Insertion 2 HET FN2531-S Chr1 17894348 T-C 0 0 Single Base Substitution 0 HET FN2531-S Chr1 19472528 G-T 0 0 Single Base Substitution 0 HET FN2531-S Chr1 21781736 C-T 0 0 Single Base Substitution 0 HET FN2531-S Chr1 42444535 A-T 0 0 Single Base Substitution 0 HET FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10790 WD domain, G-beta repeat domain containing protein, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10800 pentatricopeptide, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10810 rho termination factor, N-terminal domain containing protein, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10820 ribosomal protein L5, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10830 carnitine racemase like protein, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10840 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10850 peroxidase precursor, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10860 expressed protein FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10870 CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10880 expressed protein FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10890 CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10900 MRH1, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10910 transposon protein, putative, unclassified, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10920 peptide-N4-asparagine amidase A, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10930 peptide-N4-asparagine amidase A, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10940 S-adenosylmethionine synthetase 2, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10950 peptide-N4-asparagine amidase A, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10960 peptide-N4-asparagine amidase A, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10970 auxin-induced protein 5NG4, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10980 auxin-induced protein 5NG4, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g10990 integral membrane protein DUF6 containing protein, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11000 transposon protein, putative, unclassified, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11010 peptide-N4-asparagine amidase A, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11020 expressed protein FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11040 SCAR-like protein 2, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11054 phosphoenolpyruvate carboxylase, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11070 Alg9-like mannosyltransferase protein, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11080 transposable element protein, putative, containing Pfam profile: PF03732, Retrotrans_gag, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11110 14-3-3 protein, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11120 CID11, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11130 RNA recognition motif containing protein, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11140 retrotransposon protein, putative, unclassified, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11150 gibberellin 2-beta-dioxygenase, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11160 amino acid permease family protein, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11170 expressed protein FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11190 expressed protein FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11200 transforming protein myb, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11210 expressed protein FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11220 hydrolase, acting on carbon-nitrogen, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11230 SOUL heme-binding protein, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11240 DUF538 domain containing protein, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11250 potassium channel KAT1, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11260 phospho-N-acetylmuramoyl-pentapeptide-transferase, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11270 cytochrome P450, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11280 cytochrome P450, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11300 cytochrome P450, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11310 transposon protein, putative, Pong sub-class, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11320 transposon protein, putative, Pong sub-class FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11330 retrotransposon protein, putative, unclassified, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11340 cytochrome P450, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11350 bZIP transcription factor domain containing protein, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11360 expressed protein FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11370 ATP-dependent RNA helicase, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11390 expressed protein FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11400 hypothetical protein FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11414 sodium/calcium exchanger protein, putative, expressed FN2531-S Chr1 5764001 6162000 0 0 Deletion 397999 LOC_Os01g11430 expressed protein FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11460 zinc finger, C3HC4 type domain containing protein, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11470 expressed protein FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11480 zinc finger, C3HC4 type domain containing protein, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11490 zinc finger, C3HC4 type domain containing protein, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11500 zinc finger, C3HC4 type domain containing protein, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11510 OsMADS91 - MADS-box family gene with M-beta type-box, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11520 RING-H2 finger protein, putative, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11550 TCP family transcription factor, putative, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11570 GDSL-like lipase/acylhydrolase, putative, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11580 bromodomain containing protein, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11590 uncharacterized protein HI0077, putative, expressed FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11600 expressed protein FN2531-S Chr1 6166001 6276000 0 0 Deletion 109999 LOC_Os01g11620 GDSL-like lipase/acylhydrolase, putative, expressed FN2531-S Chr1 9367653 G-C 0 0 Single Base Substitution 0 HET FN2531-S Chr10 10388585 10388595 0 0 Deletion 10 HET FN2531-S Chr10 20553548 20553549 0 0 Deletion 1 HET FN2531-S Chr10 3360739 Chr6 7698605 0 Translocation 0 FN2531-S Chr10 3360739 Chr6 7698605 0 Translocation 0 LOC_Os06g13860 RCD1, putative, expressed FN2531-S Chr10 5946938 T-A 0 0 Single Base Substitution 0 HET FN2531-S Chr10 8620937 C-A 0 0 Single Base Substitution 0 HET FN2531-S Chr11 15876188 15876203 0 0 Deletion 15 Homo FN2531-S Chr11 17294588 T-C 0 0 Single Base Substitution 0 HET FN2531-S Chr11 18801668 G-A 0 0 Single Base Substitution 0 HET FN2531-S Chr11 8582340 8582341 0 0 Deletion 1 Homo FN2531-S Chr12 10333541 C-A 0 0 Single Base Substitution 0 HET FN2531-S Chr12 13317760 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g23530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2531-S Chr12 16232356 C-T 0 0 Single Base Substitution 0 HET FN2531-S Chr12 20683832 T-C 0 0 Single Base Substitution 0 HET FN2531-S Chr12 23417069 C-A 0 0 Single Base Substitution 0 HET FN2531-S Chr12 2511522 2511529 0 0 Deletion 7 frameshift_variant HET LOC_Os12g05490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2531-S Chr12 4656568 T-A 0 0 Single Base Substitution 0 HET FN2531-S Chr12 4656569 T-A 0 0 Single Base Substitution 0 HET FN2531-S Chr12 6808362 Chr11 13095610 0 Translocation 0 FN2531-S Chr12 7225046 C-T 0 0 Single Base Substitution 0 HET FN2531-S Chr2 15401597 15401607 0 0 Deletion 10 Homo FN2531-S Chr2 25690118 25690132 0 0 Deletion 14 frameshift_variant HET LOC_Os02g42720 expressed protein FN2531-S Chr2 26007086 C-T 0 0 Single Base Substitution 0 HET FN2531-S Chr2 28011188 G-A 0 0 Single Base Substitution 0 HET FN2531-S Chr2 30953139 30953141 0 0 Insertion 2 HET FN2531-S Chr2 30953152 T-G 0 0 Single Base Substitution 0 HET FN2531-S Chr2 31476248 A-T 0 0 Single Base Substitution 0 HET FN2531-S Chr2 35260751 T-C 0 0 Single Base Substitution 0 HET FN2531-S Chr3 14986928 14986929 0 0 Deletion 1 HET FN2531-S Chr3 19005267 C-G 0 0 Single Base Substitution 0 HET FN2531-S Chr3 24424899 24424900 0 0 Deletion 1 Homo FN2531-S Chr3 24571688 C-T 0 0 Single Base Substitution 0 Homo FN2531-S Chr3 3076618 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g06139 ABC-2 type transporter domain containing protein, expressed FN2531-S Chr3 3076619 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g06139 ABC-2 type transporter domain containing protein, expressed FN2531-S Chr3 4941281 C-T 0 0 Single Base Substitution 0 HET FN2531-S Chr4 10292766 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g18610 retrotransposon protein, putative, Ty3-gypsy subclass FN2531-S Chr4 18295007 G-A 0 0 Single Base Substitution 0 HET FN2531-S Chr4 2102917 2102919 0 0 Insertion 2 HET FN2531-S Chr4 24972508 G-T 0 0 Single Base Substitution 0 HET FN2531-S Chr4 2769758 T-C 0 0 Single Base Substitution 0 HET FN2531-S Chr4 29327638 G-A 0 0 Single Base Substitution 0 HET FN2531-S Chr4 33361832 C-A 0 0 Single Base Substitution 0 HET FN2531-S Chr5 18054708 T-A 0 0 Single Base Substitution 0 HET FN2531-S Chr5 20069064 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g33990 retrotransposon protein, putative, unclassified, expressed FN2531-S Chr5 23572057 A-T 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os05g40120 expressed protein FN2531-S Chr5 6586610 C-T 0 0 Single Base Substitution 0 HET FN2531-S Chr6 11035476 A-G 0 0 Single Base Substitution 0 HET FN2531-S Chr6 20447878 C-T 0 0 Single Base Substitution 0 HET FN2531-S Chr6 23321809 G-A 0 0 Single Base Substitution 0 HET FN2531-S Chr6 28725432 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g47410 expressed protein FN2531-S Chr6 5562925 T-C 0 0 Single Base Substitution 0 HET FN2531-S Chr6 7822655 A-G 0 0 Single Base Substitution 0 HET FN2531-S Chr7 20966750 T-A 0 0 Single Base Substitution 0 HET FN2531-S Chr7 23263442 T-C 0 0 Single Base Substitution 0 HET FN2531-S Chr7 26804185 G-T 0 0 Single Base Substitution 0 Homo FN2531-S Chr7 4716089 C-G 0 0 Single Base Substitution 0 Homo FN2531-S Chr7 6154911 6154933 0 0 Deletion 22 HET FN2531-S Chr7 6945344 6945345 0 0 Insertion 1 Homo FN2531-S Chr8 5484824 T-A 0 0 Single Base Substitution 0 HET FN2531-S Chr8 9747302 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g16000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2531-S Chr9 1532733 G-A 0 0 Single Base Substitution 0 HET FN2531-S Chr9 6318875 T-C 0 0 Single Base Substitution 0 HET