FN2533-S Chr1 10901815 T-C 0 0 Single Base Substitution 0 HET FN2533-S Chr1 11667817 11667910 0 0 Deletion 93 HET FN2533-S Chr1 12152801 C-A 0 0 Single Base Substitution 0 HET FN2533-S Chr1 19537433 G-T 0 0 Single Base Substitution 0 HET FN2533-S Chr1 22415709 C-T 0 0 Single Base Substitution 0 HET FN2533-S Chr1 37224333 37224334 0 0 Deletion 1 frameshift_variant HET LOC_Os01g64080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2533-S Chr1 41310523 G-C 0 0 Single Base Substitution 0 HET FN2533-S Chr1 488959 488980 0 0 Deletion 21 stop_gained&disruptive_inframe_deletion Homo LOC_Os01g01900 retrotransposon protein, putative, unclassified, expressed FN2533-S Chr1 6954645 7839095 0 0 Inversion 0 FN2533-S Chr1 7310033 7839087 0 0 Inversion 0 FN2533-S Chr1 8039391 T-C 0 0 Single Base Substitution 0 HET FN2533-S Chr10 13673727 T-G 0 0 Single Base Substitution 0 HET FN2533-S Chr10 18131442 C-T 0 0 Single Base Substitution 0 HET FN2533-S Chr10 19420732 A-G 0 0 Single Base Substitution 0 Homo FN2533-S Chr10 19420734 A-T 0 0 Single Base Substitution 0 Homo FN2533-S Chr10 240383 A-G 0 0 Single Base Substitution 0 HET FN2533-S Chr10 4980890 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g09220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2533-S Chr10 928181 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g02500 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed FN2533-S Chr11 11157804 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g19400 retrotransposon protein, putative, unclassified, expressed FN2533-S Chr11 16096940 C-T 0 0 Single Base Substitution 0 Homo FN2533-S Chr11 17205727 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g29680 expressed protein FN2533-S Chr11 17928556 Chr9 5981935 0 Translocation 0 FN2533-S Chr11 28241693 C-A 0 0 Single Base Substitution 0 HET FN2533-S Chr11 3249472 Chr1 2526286 0 Translocation 0 LOC_Os11g06670 expressed protein FN2533-S Chr11 5539483 A-T 0 0 Single Base Substitution 0 HET FN2533-S Chr12 13894541 T-C 0 0 Single Base Substitution 0 Homo FN2533-S Chr12 23436789 23436809 0 0 Deletion 20 HET FN2533-S Chr12 25179177 25179178 0 0 Deletion 1 frameshift_variant HET LOC_Os12g40670 retrotransposon protein, putative, unclassified, expressed FN2533-S Chr12 9229235 9229236 0 0 Insertion 1 HET FN2533-S Chr2 16887664 Chr1 16560201 0 Translocation 0 FN2533-S Chr2 16887664 Chr1 16560201 0 Translocation 0 LOC_Os01g29540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2533-S Chr2 23034896 C-T 0 0 Single Base Substitution 0 HET FN2533-S Chr2 23150804 23150807 0 0 Insertion 3 HET FN2533-S Chr2 3610807 G-A 0 0 Single Base Substitution 0 HET FN2533-S Chr2 3905820 C-A 0 0 Single Base Substitution 0 HET FN2533-S Chr2 5765606 C-T 0 0 Single Base Substitution 0 HET FN2533-S Chr2 8482121 C-T 0 0 Single Base Substitution 0 HET FN2533-S Chr3 14027186 C-A 0 0 Single Base Substitution 0 Homo FN2533-S Chr3 14027188 T-C 0 0 Single Base Substitution 0 Homo FN2533-S Chr3 14114765 14114774 0 0 Deletion 9 Homo FN2533-S Chr3 18157017 T-C 0 0 Single Base Substitution 0 Homo FN2533-S Chr3 19648163 19648164 0 0 Deletion 1 frameshift_variant HET LOC_Os03g35440 retrotransposon protein, putative, Ty3-gypsy subclass FN2533-S Chr3 24370001 24447000 0 0 Deletion 76999 LOC_Os03g43610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2533-S Chr3 24370001 24447000 0 0 Deletion 76999 LOC_Os03g43620 hypothetical protein FN2533-S Chr3 24370001 24447000 0 0 Deletion 76999 LOC_Os03g43650 uncharacterized protein At4g06744 precursor, putative, expressed FN2533-S Chr3 24370001 24447000 0 0 Deletion 76999 LOC_Os03g43660 retrotransposon protein, putative, unclassified, expressed FN2533-S Chr3 24370001 24447000 0 0 Deletion 76999 LOC_Os03g43670 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed FN2533-S Chr3 24370001 24447000 0 0 Deletion 76999 LOC_Os03g43684 KIP1, putative, expressed FN2533-S Chr3 24370001 24447000 0 0 Deletion 76999 LOC_Os03g43700 retrotransposon protein, putative, unclassified FN2533-S Chr3 24370001 24447000 0 0 Deletion 76999 LOC_Os03g43710 expressed protein FN2533-S Chr3 31724089 T-C 0 0 Single Base Substitution 0 HET FN2533-S Chr3 32296529 C-A 0 0 Single Base Substitution 0 HET FN2533-S Chr3 34405202 C-T 0 0 Single Base Substitution 0 HET FN2533-S Chr3 4138620 A-T 0 0 Single Base Substitution 0 HET FN2533-S Chr3 4973249 C-T 0 0 Single Base Substitution 0 HET FN2533-S Chr3 8074730 T-C 0 0 Single Base Substitution 0 Homo FN2533-S Chr4 19146632 Chr3 17621955 0 Translocation 0 FN2533-S Chr4 19146632 Chr3 17621955 0 Translocation 0 LOC_Os03g30934 UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed FN2533-S Chr4 27594280 27594281 0 0 Deletion 1 HET FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46770 transposon protein, putative, unclassified, expressed FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46780 MSP domain containing protein, expressed FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46790 expressed protein FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46800 expressed protein FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46810 LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46820 LTPL121 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46830 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46840 expressed protein FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46850 expressed protein FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46860 scarecrow, putative, expressed FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46870 expressed protein FN2533-S Chr4 27729001 27791000 0 0 Deletion 61999 LOC_Os04g46880 transporter, major facilitator family, putative, expressed FN2533-S Chr4 27729269 28147531 0 0 Inversion 0 FN2533-S Chr4 27790579 28296224 0 0 Inversion 0 FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47430 retrotransposon protein, putative, unclassified, expressed FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47440 retrotransposon protein, putative, unclassified, expressed FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47450 expressed protein FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47460 hypothetical protein FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47470 expressed protein FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47480 DUF630/DUF632 domains containing protein, putative, expressed FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47490 hypothetical protein FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47500 transposon protein, putative, Pong sub-class, expressed FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47510 hypothetical protein FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47520 growth regulator related protein, putative, expressed FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47530 transmembrane protein, putative, expressed FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47550 expressed protein FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47555 expressed protein FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47560 retrotransposon protein, putative, unclassified, expressed FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47570 protein kinase domain containing protein, expressed FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47580 cyclin, putative, expressed FN2533-S Chr4 28144001 28242000 0 0 Deletion 97999 LOC_Os04g47590 niemann-Pick C1 protein precursor, putative, expressed FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47600 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47610 hypothetical protein FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47620 protein kinase APK1B, chloroplast precursor, putative, expressed FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47630 hypothetical protein FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47640 RWP-RK domain-containing protein, putative, expressed FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47650 expressed protein FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47660 retrotransposon protein, putative, unclassified, expressed FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47670 expressed protein FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47680 Ser/Thr-rich protein T10 in DGCR region, putative, expressed FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47690 HMG1/2, putative, expressed FN2533-S Chr4 28249001 28297000 0 0 Deletion 47999 LOC_Os04g47700 expressed protein FN2533-S Chr4 30554765 30554766 0 0 Deletion 1 HET FN2533-S Chr4 3528276 T-C 0 0 Single Base Substitution 0 HET FN2533-S Chr4 363924 363931 0 0 Deletion 7 HET FN2533-S Chr4 7776750 7776752 0 0 Deletion 2 HET FN2533-S Chr5 18985805 Chr2 3226637 0 Translocation 0 FN2533-S Chr6 15027769 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g25730 retrotransposon protein, putative, unclassified, expressed FN2533-S Chr6 28099048 T-A 0 0 Single Base Substitution 0 HET FN2533-S Chr7 10433963 10433965 0 0 Deletion 2 Homo FN2533-S Chr7 13653932 T-C 0 0 Single Base Substitution 0 HET FN2533-S Chr7 16686661 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g28510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2533-S Chr7 17845212 T-C 0 0 Single Base Substitution 0 HET FN2533-S Chr7 18351899 Chr3 3505771 0 Translocation 0 FN2533-S Chr7 18351899 Chr3 3505771 0 Translocation 0 LOC_Os03g06920 DRD1, putative, expressed FN2533-S Chr7 27214486 Chr4 2638843 0 Translocation 0 LOC_Os04g05300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2533-S Chr7 27214486 Chr4 2638843 0 Translocation 0 LOC_Os07g45600 retrotransposon protein, putative, unclassified FN2533-S Chr7 27704451 A-G 0 0 Single Base Substitution 0 Homo FN2533-S Chr8 12047315 T-A 0 0 Single Base Substitution 0 HET FN2533-S Chr8 12065273 G-A 0 0 Single Base Substitution 0 HET FN2533-S Chr8 20445577 20844954 0 0 Inversion 0 FN2533-S Chr8 20445582 20844957 0 0 Inversion 0 FN2533-S Chr8 25845642 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g40840 exo70 exocyst complex subunit, putative, expressed FN2533-S Chr8 7295329 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g12380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2533-S Chr8 8339347 Chr7 3172532 0 Translocation 0 FN2533-S Chr9 17997457 G-A 0 0 Single Base Substitution 0 HET FN2533-S Chr9 20533222 C-T 0 0 Single Base Substitution 0 Homo FN2533-S Chr9 3141605 3141606 0 0 Insertion 1 HET FN2533-S Chr9 594806 G-A 0 0 Single Base Substitution 0 Homo FN2533-S Chr9 595997 C-A 0 0 Single Base Substitution 0 Homo