FN2535-S Chr1 13730501 T-C 0 0 Single Base Substitution 0 HET FN2535-S Chr1 19540600 20453969 0 0 Inversion 0 FN2535-S Chr1 19540605 20453983 0 0 Inversion 0 FN2535-S Chr1 20249950 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g36480 expressed protein FN2535-S Chr1 23538371 C-G 0 0 Single Base Substitution 0 HET FN2535-S Chr1 34268896 C-T 0 0 Single Base Substitution 0 HET FN2535-S Chr1 37112877 A-G 0 0 Single Base Substitution 0 Homo FN2535-S Chr1 43063476 A-C 0 0 Single Base Substitution 0 Homo FN2535-S Chr1 43063477 C-A 0 0 Single Base Substitution 0 Homo FN2535-S Chr10 13495400 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g26050 methionyl-tRNA synthetase, putative, expressed FN2535-S Chr10 19209662 A-T 0 0 Single Base Substitution 0 HET FN2535-S Chr10 21529600 T-C 0 0 Single Base Substitution 0 HET FN2535-S Chr10 6762971 C-G 0 0 Single Base Substitution 0 HET FN2535-S Chr10 8000369 T-C 0 0 Single Base Substitution 0 HET FN2535-S Chr11 11380109 11380110 0 0 Deletion 1 HET FN2535-S Chr11 17732187 C-T 0 0 Single Base Substitution 0 HET FN2535-S Chr11 28824196 28824210 0 0 Deletion 14 Homo FN2535-S Chr11 959685 1024631 0 0 Inversion 0 FN2535-S Chr11 959685 1024631 0 0 Inversion 0 LOC_Os11g02950 auxin efflux carrier component, putative, expressed FN2535-S Chr12 10641914 10641922 0 0 Deletion 8 Homo FN2535-S Chr12 20437607 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g33910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr12 20596145 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g34090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr12 20596146 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g34090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr12 20596147 C-T 0 0 Single Base Substitution 0 Homo FN2535-S Chr12 3411286 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g06980 SAP domain containing protein, expressed FN2535-S Chr12 9424739 C-T 0 0 Single Base Substitution 0 Homo FN2535-S Chr2 11099418 G-A 0 0 Single Base Substitution 0 HET FN2535-S Chr2 11099881 A-T 0 0 Single Base Substitution 0 HET FN2535-S Chr2 2182351 A-G 0 0 Single Base Substitution 0 HET FN2535-S Chr2 28611472 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g46900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr2 30660980 C-A 0 0 Single Base Substitution 0 HET FN2535-S Chr2 3239853 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g06500 DSHCT domain containing protein, expressed FN2535-S Chr2 34523282 34523314 0 0 Deletion 32 frameshift_variant HET LOC_Os02g56390 transposon protein, putative, unclassified, expressed FN2535-S Chr3 27981856 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g49120 transposon protein, putative, unclassified, expressed FN2535-S Chr3 34276544 34276551 0 0 Deletion 7 HET FN2535-S Chr3 35329786 G-A 0 0 Single Base Substitution 0 HET FN2535-S Chr3 36030001 36043000 0 0 Deletion 12999 LOC_Os03g63810 WRKY80, expressed FN2535-S Chr3 8979471 G-A 0 0 Single Base Substitution 0 HET FN2535-S Chr4 1445771 G-C 0 0 Single Base Substitution 0 HET FN2535-S Chr4 14533348 T-C 0 0 Single Base Substitution 0 HET FN2535-S Chr4 25814028 A-G 0 0 Single Base Substitution 0 HET FN2535-S Chr4 6269660 T-C 0 0 Single Base Substitution 0 HET FN2535-S Chr4 7071480 7071481 0 0 Deletion 1 HET FN2535-S Chr4 7219471 7219478 0 0 Deletion 7 HET FN2535-S Chr4 7780983 A-G 0 0 Single Base Substitution 0 HET FN2535-S Chr4 9382001 9436000 0 0 Deletion 53999 LOC_Os04g17130 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr4 9382001 9436000 0 0 Deletion 53999 LOC_Os04g17140 retrotransposon, putative, centromere-specific, expressed FN2535-S Chr4 9382001 9436000 0 0 Deletion 53999 LOC_Os04g17150 hypothetical protein FN2535-S Chr4 9382001 9436000 0 0 Deletion 53999 LOC_Os04g17160 expressed protein FN2535-S Chr4 9382001 9436000 0 0 Deletion 53999 LOC_Os04g17170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr4 9382001 9436000 0 0 Deletion 53999 LOC_Os04g17180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr4 9382001 9436000 0 0 Deletion 53999 LOC_Os04g17190 transposon protein, putative, Mutator sub-class, expressed FN2535-S Chr4 9382001 9436000 0 0 Deletion 53999 LOC_Os04g17200 GRF zinc finger family protein FN2535-S Chr4 9382001 9436000 0 0 Deletion 53999 LOC_Os04g17210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr4 9382368 Chr2 28251277 0 Translocation 0 LOC_Os04g17130 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr4 9660456 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g17640 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr5 20834674 20834677 0 0 Deletion 3 Homo FN2535-S Chr5 3391997 3392004 0 0 Insertion 7 HET FN2535-S Chr5 462628 A-G 0 0 Single Base Substitution 0 HET FN2535-S Chr6 15060394 15060402 0 0 Deletion 8 splice_acceptor_variant&splice_region_variant&intron_variant Homo LOC_Os06g25780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr6 3595670 Chr1 12316488 0 Translocation 0 LOC_Os06g07474 tetratricopeptide repeat domain containing protein, expressed FN2535-S Chr6 3700326 Chr1 12316543 0 Translocation 0 FN2535-S Chr6 64116 64470 0 0 Deletion 354 HET FN2535-S Chr6 7292234 Chr2 18076972 0 Translocation 0 FN2535-S Chr6 7292234 Chr2 18076972 0 Translocation 0 LOC_Os02g30350 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr7 14901792 15032204 0 0 Inversion 0 FN2535-S Chr7 14901802 15032214 0 0 Inversion 0 FN2535-S Chr7 15068589 C-T 0 0 Single Base Substitution 0 HET FN2535-S Chr7 23056696 A-G 0 0 Single Base Substitution 0 HET FN2535-S Chr7 7439001 7491000 0 0 Deletion 51999 LOC_Os07g12970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr7 7439001 7491000 0 0 Deletion 51999 LOC_Os07g12980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr7 7439001 7491000 0 0 Deletion 51999 LOC_Os07g12990 conserved hypothetical protein FN2535-S Chr7 7439001 7491000 0 0 Deletion 51999 LOC_Os07g13010 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN2535-S Chr7 7439001 7491000 0 0 Deletion 51999 LOC_Os07g13020 SWIM zinc finger family protein, putative FN2535-S Chr7 7439001 7491000 0 0 Deletion 51999 LOC_Os07g13030 expressed protein FN2535-S Chr7 7439001 7491000 0 0 Deletion 51999 LOC_Os07g13040 expressed protein FN2535-S Chr7 7439001 7491000 0 0 Deletion 51999 LOC_Os07g13050 hypothetical protein FN2535-S Chr7 7439001 7491000 0 0 Deletion 51999 LOC_Os07g13060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr7 7439158 Chr3 30809728 0 Translocation 0 FN2535-S Chr7 7439158 Chr3 30809728 0 Translocation 0 LOC_Os03g53740 expressed protein FN2535-S Chr7 7441341 Chr3 30809733 0 Translocation 0 FN2535-S Chr7 7441341 Chr3 30809733 0 Translocation 0 LOC_Os03g53740 expressed protein FN2535-S Chr7 7689117 Chr1 12316565 0 Translocation 0 LOC_Os07g13400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr7 8404042 C-T 0 0 Single Base Substitution 0 HET FN2535-S Chr7 9195249 C-A 0 0 Single Base Substitution 0 HET FN2535-S Chr7 9645562 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g16460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr7 9645563 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g16460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28660 expressed protein FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28670 pathogenesis-related Bet v I family protein, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28680 ubiquitin-conjugating enzyme, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28690 expressed protein FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28700 dnaJ domain containing protein, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28710 receptor protein kinase CRINKLY4 precursor, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28720 retrotransposon protein, putative, unclassified FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28730 NAD dependent epimerase/dehydratase family protein, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28740 expressed protein FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28780 SKP1, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28784 expressed protein FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28790 dirigent, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28800 Skp1 family, dimerisation domain containing protein, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28810 expressed protein FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28820 Skp1 family, dimerisation domain containing protein, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28830 pentatricopeptide, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28840 hydrolase, NUDIX family, domain containing protein, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28850 expressed protein FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28860 hydrolase, NUDIX family, domain containing protein, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28870 receptor-like protein kinase 5 precursor, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28880 patatin, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28890 protein kinase family protein, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28900 OsRR8 type-A response regulator, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28920 hypothetical protein FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28930 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28940 OsFBX289 - F-box domain containing protein, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28950 response regulator receiver domain containing protein, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28960 expressed protein FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28970 expressed protein FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28980 exonuclease, putative, expressed FN2535-S Chr8 17497001 17739000 0 0 Deletion 241999 LOC_Os08g28990 transposon protein, putative, unclassified, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29000 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29020 wall-associated kinase-like 2, putative, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29030 expressed protein FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29040 protein kinase domain containing protein, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29050 retrotransposon protein, putative, unclassified FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29060 retrotransposon protein, putative, unclassified FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29070 retrotransposon protein, putative, unclassified FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29080 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29090 hypothetical protein FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29100 SAM domain family protein, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29110 thioredoxin, putative, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29124 expressed protein FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29140 hypothetical protein FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29150 phospholipid-transporting ATPase, putative, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29160 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29170 dehydrogenase, putative, expressed FN2535-S Chr8 17745001 17873000 0 0 Deletion 127999 LOC_Os08g29180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr8 18116882 G-C 0 0 Single Base Substitution 0 Homo FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30210 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30220 retrotransposon protein, putative, unclassified FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30230 conserved hypothetical protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30240 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30260 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30270 transposon protein, putative, unclassified FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30280 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30290 retrotransposon protein, putative, unclassified FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30300 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30340 PAS2, putative, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30360 retrotransposon protein, putative, Ty1-copia subclass FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30370 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30380 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30400 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30410 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30420 hypothetical protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30430 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30440 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30460 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30470 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30480 clathrin adaptor complex small chain domain containing protein, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30490 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30500 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30510 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30520 plant protein of unknown function domain containing protein, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30540 expressed protein FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30550 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr8 18563001 18825000 0 0 Deletion 261999 LOC_Os08g30554 expressed protein FN2535-S Chr9 120424 120425 0 0 Deletion 1 HET FN2535-S Chr9 15124765 C-T 0 0 Single Base Substitution 0 HET FN2535-S Chr9 21196033 A-G 0 0 Single Base Substitution 0 HET FN2535-S Chr9 21904232 C-T 0 0 Single Base Substitution 0 HET FN2535-S Chr9 22552301 G-T 0 0 Single Base Substitution 0 HET FN2535-S Chr9 6719864 T-C 0 0 Single Base Substitution 0 HET FN2535-S Chr9 6859100 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g12130 retrotransposon protein, putative, unclassified, expressed FN2535-S Chr9 7299822 T-C 0 0 Single Base Substitution 0 HET FN2535-S Chr9 8475172 Chr5 8030676 0 Translocation 0 LOC_Os09g14340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed