FN2554-S Chr1 10067682 10067868 0 0 Inversion 0 FN2554-S Chr1 11608995 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr1 12874853 12874988 0 0 Inversion 0 FN2554-S Chr1 13993974 C-G 0 0 Single Base Substitution 0 HET FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38390 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38430 plant protein of unknown function domain containing protein, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38440 transposon protein, putative, unclassified, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38450 hypothetical protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38460 retrotransposon protein, putative, unclassified, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38480 GA18326-PA, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38490 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38500 DUF538 domain containing protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38510 protein transport protein Sec61 subunit beta, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38520 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38530 ELF3 protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38540 transposon protein, putative, unclassified, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38550 transposon protein, putative, unclassified, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38560 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38570 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38580 beta,beta-carotene 9,10-dioxygenase, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38590 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38600 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38610 helix-loop-helix DNA-binding domain containing protein, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38620 3-5 exonuclease/ nucleic acid binding protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38640 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38650 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38660 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38670 transporter family protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38680 transporter family protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38690 nucleic acid binding protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38700 nucleic acid binding protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38710 nucleic acid binding protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38720 nucleic acid binding protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38750 expressed protein FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38760 nucleic acid binding protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38780 nucleic acid binding protein, putative, expressed FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38790 transposon protein, putative, CACTA, En/Spm sub-class FN2554-S Chr1 21557001 21769000 0 0 Deletion 211999 LOC_Os01g38800 retrotransposon protein, putative, unclassified FN2554-S Chr1 21773001 21829000 0 0 Deletion 55999 LOC_Os01g38820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2554-S Chr1 21773001 21829000 0 0 Deletion 55999 LOC_Os01g38830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2554-S Chr1 21773001 21829000 0 0 Deletion 55999 LOC_Os01g38840 TKL_IRAK_DUF26-le.1 - DUF26 kinases have homology to DUF26 containing loci, expressed FN2554-S Chr1 21773001 21829000 0 0 Deletion 55999 LOC_Os01g38850 receptor-like serine-threonine protein kinase, putative, expressed FN2554-S Chr1 21773001 21829000 0 0 Deletion 55999 LOC_Os01g38860 expressed protein FN2554-S Chr1 21773001 21829000 0 0 Deletion 55999 LOC_Os01g38870 expressed protein FN2554-S Chr1 21773001 21829000 0 0 Deletion 55999 LOC_Os01g38880 expressed protein FN2554-S Chr1 21773001 21829000 0 0 Deletion 55999 LOC_Os01g38890 expressed protein FN2554-S Chr1 28187548 G-T 0 0 Single Base Substitution 0 HET FN2554-S Chr1 32461298 A-T 0 0 Single Base Substitution 0 HET FN2554-S Chr1 35512069 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr1 36302666 36302667 0 0 Deletion 1 HET FN2554-S Chr1 39291070 39881959 0 0 Inversion 0 LOC_Os01g67590 oligopeptidase, putative, expressed FN2554-S Chr1 39291070 39881959 0 0 Inversion 0 LOC_Os01g68680 tetratricopeptide repeat domain containing protein, expressed FN2554-S Chr1 39291081 39881968 0 0 Inversion 0 LOC_Os01g67590 oligopeptidase, putative, expressed FN2554-S Chr1 39291081 39881968 0 0 Inversion 0 LOC_Os01g68680 tetratricopeptide repeat domain containing protein, expressed FN2554-S Chr1 8012023 A-G 0 0 Single Base Substitution 0 HET FN2554-S Chr10 11098367 C-T 0 0 Single Base Substitution 0 HET FN2554-S Chr10 11261339 T-A 0 0 Single Base Substitution 0 HET FN2554-S Chr10 1362810 1362943 0 0 Inversion 0 FN2554-S Chr10 18270169 18646670 0 0 Inversion 0 LOC_Os10g34230 cytokinin dehydrogenase precursor, putative, expressed FN2554-S Chr10 18270190 Chr3 1090924 0 Translocation 0 LOC_Os03g02800 no apical meristem protein, putative, expressed FN2554-S Chr10 18270190 Chr3 1090924 0 Translocation 0 LOC_Os10g34230 cytokinin dehydrogenase precursor, putative, expressed FN2554-S Chr10 18273744 Chr3 1090843 0 Translocation 0 LOC_Os03g02800 no apical meristem protein, putative, expressed FN2554-S Chr10 18273744 Chr3 1090843 0 Translocation 0 LOC_Os10g34230 cytokinin dehydrogenase precursor, putative, expressed FN2554-S Chr10 18273764 18646675 0 0 Inversion 0 LOC_Os10g34230 cytokinin dehydrogenase precursor, putative, expressed FN2554-S Chr10 2174975 2174979 0 0 Deletion 4 HET FN2554-S Chr11 21447951 A-G 0 0 Single Base Substitution 0 HET FN2554-S Chr11 24090093 24090094 0 0 Deletion 1 frameshift_variant HET LOC_Os11g40410 expressed protein FN2554-S Chr11 25831477 25831483 0 0 Insertion 6 HET FN2554-S Chr11 27840158 Chr2 16105683 0 Translocation 0 FN2554-S Chr11 2945540 C-T 0 0 Single Base Substitution 0 HET FN2554-S Chr11 9713142 9713153 0 0 Deletion 11 Homo FN2554-S Chr12 1135559 1135742 0 0 Inversion 0 FN2554-S Chr12 11400775 11400940 0 0 Inversion 0 FN2554-S Chr12 4286552 C-G 0 0 Single Base Substitution 0 HET FN2554-S Chr12 57679 T-C 0 0 Single Base Substitution 0 HET FN2554-S Chr12 6312000 Chr4 10315830 0 Translocation 0 FN2554-S Chr12 7584391 7584402 0 0 Deletion 11 Homo FN2554-S Chr2 13427379 G-T 0 0 Single Base Substitution 0 HET FN2554-S Chr2 14519132 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g25040 retrotransposon protein, putative, unclassified, expressed FN2554-S Chr2 16382407 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g27650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2554-S Chr2 18885343 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr2 198255 198469 0 0 Inversion 0 FN2554-S Chr2 23248002 G-T 0 0 Single Base Substitution 0 HET FN2554-S Chr2 27566678 A-G 0 0 Single Base Substitution 0 HET FN2554-S Chr2 28276426 28276433 0 0 Deletion 7 Homo FN2554-S Chr2 2874264 2874530 0 0 Inversion 0 FN2554-S Chr2 32225367 G-T 0 0 Single Base Substitution 0 Homo FN2554-S Chr2 4337689 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g08190 CYPRO4, putative, expressed FN2554-S Chr2 4337693 G-T 0 0 Single Base Substitution 0 HET FN2554-S Chr3 10187657 C-T 0 0 Single Base Substitution 0 HET FN2554-S Chr3 10961508 T-C 0 0 Single Base Substitution 0 HET FN2554-S Chr3 12276555 T-A 0 0 Single Base Substitution 0 HET FN2554-S Chr3 13809606 T-G 0 0 Single Base Substitution 0 HET FN2554-S Chr3 17280435 C-T 0 0 Single Base Substitution 0 HET FN2554-S Chr3 17707732 17707733 0 0 Deletion 1 HET FN2554-S Chr3 21751371 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr3 23033524 C-T 0 0 Single Base Substitution 0 HET FN2554-S Chr3 28419030 C-T 0 0 Single Base Substitution 0 HET FN2554-S Chr3 29401805 C-A 0 0 Single Base Substitution 0 HET FN2554-S Chr3 31604617 31604631 0 0 Deletion 14 HET FN2554-S Chr3 31852753 T-A 0 0 Single Base Substitution 0 HET FN2554-S Chr3 698722 698893 0 0 Inversion 0 LOC_Os03g02150 adapitin protein, putative, expressed FN2554-S Chr3 8922201 G-T 0 0 Single Base Substitution 0 HET FN2554-S Chr3 8922202 C-A 0 0 Single Base Substitution 0 HET FN2554-S Chr4 1289574 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr4 13839328 G-T 0 0 Single Base Substitution 0 HET FN2554-S Chr4 14875728 T-A 0 0 Single Base Substitution 0 HET FN2554-S Chr4 14875730 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr4 18925440 18925444 0 0 Deletion 4 HET FN2554-S Chr4 23097551 23097557 0 0 Insertion 6 HET FN2554-S Chr4 25728872 25728980 0 0 Inversion 0 LOC_Os04g43490 CK1_CaseinKinase_1.7 - CK1 includes the casein kinase 1 kinases, expressed FN2554-S Chr4 27651266 T-C 0 0 Single Base Substitution 0 HET FN2554-S Chr4 3004756 T-C 0 0 Single Base Substitution 0 Homo FN2554-S Chr4 31894381 A-C 0 0 Single Base Substitution 0 HET FN2554-S Chr4 31894382 T-A 0 0 Single Base Substitution 0 HET FN2554-S Chr4 32223314 32223441 0 0 Inversion 0 LOC_Os04g54070 receptor-like kinase, putative, expressed FN2554-S Chr4 32873 32889 0 0 Deletion 16 frameshift_variant HET LOC_Os04g01040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2554-S Chr4 34957044 34957047 0 0 Deletion 3 HET FN2554-S Chr4 4646341 4646449 0 0 Inversion 0 FN2554-S Chr5 13452254 C-T 0 0 Single Base Substitution 0 HET FN2554-S Chr5 1613989 1614166 0 0 Inversion 0 FN2554-S Chr5 18582137 A-G 0 0 Single Base Substitution 0 HET FN2554-S Chr5 18970562 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g32480 transposon protein, putative, unclassified, expressed FN2554-S Chr5 2881057 2881173 0 0 Inversion 0 LOC_Os05g05780 chromatin-remodeling complex ATPase chain, putative, expressed FN2554-S Chr5 4058702 C-T 0 0 Single Base Substitution 0 HET FN2554-S Chr5 4115148 4115402 0 0 Inversion 0 FN2554-S Chr6 23669614 23669820 0 0 Inversion 0 FN2554-S Chr6 26446239 A-T 0 0 Single Base Substitution 0 HET FN2554-S Chr6 28004338 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr6 3101326 C-T 0 0 Single Base Substitution 0 HET FN2554-S Chr7 10578576 C-A 0 0 Single Base Substitution 0 HET FN2554-S Chr7 19738042 G-A 0 0 Single Base Substitution 0 Homo FN2554-S Chr7 20170939 Chr6 5157867 0 Translocation 0 FN2554-S Chr7 2327212 C-T 0 0 Single Base Substitution 0 Homo FN2554-S Chr7 26245040 26245144 0 0 Inversion 0 LOC_Os07g43890 emp24/gp25L/p24 family protein, putative, expressed FN2554-S Chr7 2765420 G-C 0 0 Single Base Substitution 0 HET FN2554-S Chr7 2860053 G-A 0 0 Single Base Substitution 0 Homo FN2554-S Chr7 4836415 G-A 0 0 Single Base Substitution 0 Homo FN2554-S Chr7 6690897 T-C 0 0 Single Base Substitution 0 HET FN2554-S Chr7 7151559 T-C 0 0 Single Base Substitution 0 HET FN2554-S Chr7 9664534 C-A 0 0 Single Base Substitution 0 HET FN2554-S Chr8 12316474 Chr1 9101596 0 Translocation 0 FN2554-S Chr8 12316474 Chr1 9101596 0 Translocation 0 LOC_Os01g16130 retrotransposon protein, putative, unclassified, expressed FN2554-S Chr8 13684513 Chr4 10213111 0 Translocation 0 LOC_Os04g18480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2554-S Chr8 13684513 Chr4 10213111 0 Translocation 0 LOC_Os08g22760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2554-S Chr8 1457519 1457533 0 0 Deletion 14 Homo FN2554-S Chr8 16295004 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr8 16741015 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr8 17254227 A-T 0 0 Single Base Substitution 0 Homo FN2554-S Chr8 27502646 27502647 0 0 Deletion 1 HET FN2554-S Chr8 5861407 G-C 0 0 Single Base Substitution 0 Homo FN2554-S Chr9 12397787 G-A 0 0 Single Base Substitution 0 HET FN2554-S Chr9 16629206 16629207 0 0 Deletion 1 Homo FN2554-S Chr9 19031288 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g31518 cinnamoyl-CoA reductase, putative FN2554-S Chr9 19031289 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g31518 cinnamoyl-CoA reductase, putative FN2554-S Chr9 21903222 21903224 0 0 Insertion 2 HET FN2554-S Chr9 6832418 6832424 0 0 Deletion 6 HET