FN2560-S Chr1 16886262 16886264 0 0 Insertion 2 HET FN2560-S Chr1 39443010 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr1 9324593 C-T 0 0 Single Base Substitution 0 HET FN2560-S Chr10 10336568 Chr3 7904909 0 Translocation 0 FN2560-S Chr10 10502959 Chr9 7055091 0 Translocation 0 FN2560-S Chr10 12158976 Chr4 4725772 0 Translocation 0 LOC_Os10g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2560-S Chr10 16249798 Chr4 5754072 0 Translocation 0 FN2560-S Chr10 18201270 Chr3 14549804 0 Translocation 0 FN2560-S Chr10 5143103 T-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os10g09529 retrotransposon protein, putative, unclassified, expressed FN2560-S Chr10 5149587 A-T 0 0 Single Base Substitution 0 HET FN2560-S Chr10 85879 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr11 13696375 Chr8 10037279 0 Translocation 0 LOC_Os08g16420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2560-S Chr11 13696375 Chr8 10037279 0 Translocation 0 LOC_Os11g24090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2560-S Chr11 15950035 Chr1 14847997 0 Translocation 0 FN2560-S Chr11 24902064 Chr9 10513769 0 Translocation 0 LOC_Os11g41520 hypothetical protein FN2560-S Chr11 25330902 Chr1 18683345 0 Translocation 0 FN2560-S Chr11 28718653 Chr8 25742856 0 Translocation 0 LOC_Os08g40650 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN2560-S Chr11 28718653 Chr8 25742856 0 Translocation 0 LOC_Os11g47490 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN2560-S Chr11 355183 Chr7 302573 0 Translocation 0 LOC_Os11g01600 macrophage migration inhibitory factor, putative, expressed FN2560-S Chr11 3906881 Chr6 1550339 0 Translocation 0 FN2560-S Chr11 3906881 Chr6 1550339 0 Translocation 0 LOC_Os06g03850 impaired sucrose induction 1, putative, expressed FN2560-S Chr11 4160652 Chr8 8454867 0 Translocation 0 LOC_Os11g08000 hypothetical protein FN2560-S Chr11 4210906 Chr4 21281125 0 Translocation 0 LOC_Os04g35010 helix-loop-helix DNA-binding domain containing protein, expressed FN2560-S Chr11 4210906 Chr4 21281125 0 Translocation 0 LOC_Os11g08060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2560-S Chr12 1145803 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr12 12131972 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr12 14401641 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g25070 retrotransposon protein, putative, unclassified, expressed FN2560-S Chr12 18622797 Chr4 505947 0 Translocation 0 FN2560-S Chr12 18622797 Chr4 505947 0 Translocation 0 LOC_Os04g01790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2560-S Chr12 229821 Chr11 202782 0 Translocation 0 LOC_Os11g01340 omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed FN2560-S Chr12 229821 Chr11 202782 0 Translocation 0 LOC_Os12g01370 fatty acid desaturase, putative, expressed FN2560-S Chr12 23144794 C-T 0 0 Single Base Substitution 0 HET FN2560-S Chr12 6559971 G-T 0 0 Single Base Substitution 0 HET FN2560-S Chr2 16736332 Chr1 1389900 0 Translocation 0 FN2560-S Chr2 16736332 Chr1 1389900 0 Translocation 0 LOC_Os01g03452 transposon protein, putative, unclassified, expressed FN2560-S Chr2 23027097 C-T 0 0 Single Base Substitution 0 HET FN2560-S Chr2 25552296 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr2 27133113 Chr1 25821321 0 Translocation 0 FN2560-S Chr2 30164044 T-C 0 0 Single Base Substitution 0 Homo FN2560-S Chr2 31335712 G-A 0 0 Single Base Substitution 0 Homo FN2560-S Chr2 3890793 3890794 0 0 Deletion 1 frameshift_variant HET LOC_Os02g07520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2560-S Chr2 3898317 3898318 0 0 Insertion 1 HET FN2560-S Chr3 14896175 C-A 0 0 Single Base Substitution 0 HET FN2560-S Chr3 25018614 25263575 0 0 Inversion 0 FN2560-S Chr3 3601762 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr3 7255505 C-T 0 0 Single Base Substitution 0 HET FN2560-S Chr4 159875 T-A 0 0 Single Base Substitution 0 HET FN2560-S Chr4 16149806 16149808 0 0 Insertion 2 HET FN2560-S Chr4 17955491 Chr1 41377669 0 Translocation 0 FN2560-S Chr4 27390875 A-G 0 0 Single Base Substitution 0 Homo FN2560-S Chr4 28377393 A-G 0 0 Single Base Substitution 0 Homo FN2560-S Chr4 29321123 29321390 0 0 Inversion 0 FN2560-S Chr4 33024753 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g55510 zinc finger, C3HC4 type domain containing protein, expressed FN2560-S Chr4 8954481 8954482 0 0 Insertion 1 HET FN2560-S Chr5 21989314 21989315 0 0 Deletion 1 frameshift_variant HET LOC_Os05g37580 retrotransposon protein, putative, unclassified, expressed FN2560-S Chr5 6107421 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr5 8852960 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr6 10589330 10659785 0 0 Inversion 0 LOC_Os06g18670 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN2560-S Chr6 10589330 10659785 0 0 Inversion 0 LOC_Os06g18790 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN2560-S Chr6 13311654 13312016 0 0 Inversion 0 FN2560-S Chr6 15739662 T-G 0 0 Single Base Substitution 0 HET FN2560-S Chr6 17781278 Chr2 15315086 0 Translocation 0 FN2560-S Chr6 23437421 Chr4 33991189 0 Translocation 0 FN2560-S Chr6 25270704 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr6 29215735 29215736 0 0 Insertion 1 HET FN2560-S Chr6 3279737 Chr3 22139500 0 Translocation 0 FN2560-S Chr6 3279739 Chr3 22138540 0 Translocation 0 FN2560-S Chr7 11460076 11460077 0 0 Insertion 1 HET FN2560-S Chr7 12289135 C-T 0 0 Single Base Substitution 0 HET FN2560-S Chr7 17962161 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g30350 retrotransposon protein, putative, unclassified, expressed FN2560-S Chr7 21959958 Chr1 4558310 0 Translocation 0 FN2560-S Chr7 22081776 Chr3 1364441 0 Translocation 0 FN2560-S Chr7 22081776 Chr3 1364441 0 Translocation 0 LOC_Os03g03210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2560-S Chr7 26565498 26565605 0 0 Inversion 0 FN2560-S Chr7 8083958 C-T 0 0 Single Base Substitution 0 HET FN2560-S Chr8 11861399 Chr4 3218469 0 Translocation 0 LOC_Os08g19820 expressed protein FN2560-S Chr8 12465023 12465025 0 0 Insertion 2 HET FN2560-S Chr8 14534925 14548971 0 0 Inversion 0 FN2560-S Chr8 15537464 C-A 0 0 Single Base Substitution 0 HET FN2560-S Chr8 17040704 G-A 0 0 Single Base Substitution 0 HET FN2560-S Chr8 17372438 17372440 0 0 Insertion 2 HET FN2560-S Chr8 18974201 G-C 0 0 Single Base Substitution 0 HET FN2560-S Chr8 25612009 C-G 0 0 Single Base Substitution 0 HET FN2560-S Chr8 25824153 25824155 0 0 Insertion 2 HET FN2560-S Chr8 26852368 26852573 0 0 Inversion 0 LOC_Os08g42480 expressed protein FN2560-S Chr8 26997820 Chr5 23804823 0 Translocation 0 FN2560-S Chr8 8292520 Chr1 20886576 0 Translocation 0 LOC_Os01g37410 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2560-S Chr8 8292520 Chr1 20886576 0 Translocation 0 LOC_Os08g13880 expressed protein FN2560-S Chr8 8561243 Chr1 14847320 0 Translocation 0 LOC_Os08g14290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2560-S Chr8 9785003 T-C 0 0 Single Base Substitution 0 Homo FN2560-S Chr8 9903127 A-G 0 0 Single Base Substitution 0 Homo FN2560-S Chr9 13887073 G-T 0 0 Single Base Substitution 0 HET FN2560-S Chr9 15378875 T-A 0 0 Single Base Substitution 0 Homo FN2560-S Chr9 19944904 Chr1 5636364 0 Translocation 0 LOC_Os09g33780 expressed protein FN2560-S Chr9 22885242 A-T 0 0 Single Base Substitution 0 HET FN2560-S Chr9 7072368 C-T 0 0 Single Base Substitution 0 HET