FN2609-S Chr1 10295206 10513175 0 0 Inversion 0 LOC_Os01g18320 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed FN2609-S Chr1 10295206 10513175 0 0 Inversion 0 LOC_Os01g18660 aminotransferase, putative, expressed FN2609-S Chr1 10295268 10513182 0 0 Inversion 0 LOC_Os01g18320 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed FN2609-S Chr1 10295268 10513182 0 0 Inversion 0 LOC_Os01g18660 aminotransferase, putative, expressed FN2609-S Chr1 12767571 G-A 0 0 Single Base Substitution 0 HET FN2609-S Chr1 17159895 G-T 0 0 Single Base Substitution 0 HET FN2609-S Chr1 17992028 17992033 0 0 Deletion 5 Homo FN2609-S Chr1 19635102 19635103 0 0 Deletion 1 Homo FN2609-S Chr1 24373514 G-A 0 0 Single Base Substitution 0 HET FN2609-S Chr1 25052000 A-G 0 0 Single Base Substitution 0 HET FN2609-S Chr1 29847766 A-G 0 0 Single Base Substitution 0 HET FN2609-S Chr1 30319259 30319265 0 0 Deletion 6 HET FN2609-S Chr1 38041945 38041946 0 0 Deletion 1 HET FN2609-S Chr1 38408375 38408386 0 0 Deletion 11 HET FN2609-S Chr1 38886001 38919000 0 0 Deletion 32999 LOC_Os01g66940 kinase, pfkB family, putative, expressed FN2609-S Chr1 38886001 38919000 0 0 Deletion 32999 LOC_Os01g66950 expressed protein FN2609-S Chr1 38886001 38919000 0 0 Deletion 32999 LOC_Os01g66960 selenoprotein precursor, putative, expressed FN2609-S Chr1 38886001 38919000 0 0 Deletion 32999 LOC_Os01g66970 zinc finger, C3HC4 type domain containing protein, expressed FN2609-S Chr1 38886001 38919000 0 0 Deletion 32999 LOC_Os01g66980 expressed protein FN2609-S Chr1 38886001 38919000 0 0 Deletion 32999 LOC_Os01g66990 expressed protein FN2609-S Chr1 38886001 38919000 0 0 Deletion 32999 LOC_Os01g67000 membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed FN2609-S Chr1 38886001 38919000 0 0 Deletion 32999 LOC_Os01g67010 expressed protein FN2609-S Chr1 41251990 T-C 0 0 Single Base Substitution 0 HET FN2609-S Chr1 4952208 4952230 0 0 Deletion 22 Homo FN2609-S Chr1 6173528 C-T 0 0 Single Base Substitution 0 HET FN2609-S Chr10 4695474 Chr4 1391381 0 Translocation 0 LOC_Os04g03260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2609-S Chr10 4695474 Chr4 1391381 0 Translocation 0 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2609-S Chr11 10047806 T-C 0 0 Single Base Substitution 0 HET FN2609-S Chr11 11950558 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g20610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2609-S Chr11 16611489 A-T 0 0 Single Base Substitution 0 HET FN2609-S Chr11 3076607 3076614 0 0 Deletion 7 Homo FN2609-S Chr12 10912091 10912092 0 0 Deletion 1 frameshift_variant Homo LOC_Os12g18830 retrotransposon protein, putative, unclassified, expressed FN2609-S Chr12 11112950 T-C 0 0 Single Base Substitution 0 Homo FN2609-S Chr12 11540092 Chr4 6963279 0 Translocation 0 FN2609-S Chr12 12005281 12005282 0 0 Deletion 1 HET FN2609-S Chr12 15592871 C-T 0 0 Single Base Substitution 0 HET FN2609-S Chr12 1616132 1616134 0 0 Insertion 2 HET FN2609-S Chr12 21060460 G-A 0 0 Single Base Substitution 0 HET FN2609-S Chr2 18058928 C-T 0 0 Single Base Substitution 0 HET FN2609-S Chr2 26205199 C-G 0 0 Single Base Substitution 0 HET FN2609-S Chr2 26235101 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g43460 required to maintain repression 1, putative, expressed FN2609-S Chr2 26950544 26950549 0 0 Deletion 5 frameshift_variant HET LOC_Os02g44510 UDP-glucose glycoprotein glucosyltransferase 1 precursor, putative, expressed FN2609-S Chr2 32125718 32125724 0 0 Deletion 6 HET FN2609-S Chr2 5548245 6107375 0 0 Inversion 0 LOC_Os02g10530 expressed protein FN2609-S Chr2 5675972 T-A 0 0 Single Base Substitution 0 HET FN2609-S Chr3 10581533 G-A 0 0 Single Base Substitution 0 HET FN2609-S Chr3 19163403 G-A 0 0 Single Base Substitution 0 HET FN2609-S Chr3 6548411 C-A 0 0 Single Base Substitution 0 Homo FN2609-S Chr3 8934063 A-T 0 0 Single Base Substitution 0 HET FN2609-S Chr4 1393315 1399799 0 0 Inversion 0 FN2609-S Chr4 1393315 1399799 0 0 Inversion 0 LOC_Os04g03290 retrotransposon protein, putative, unclassified, expressed FN2609-S Chr4 17518990 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g29469 retrotransposon protein, putative, unclassified, expressed FN2609-S Chr4 21834888 T-A 0 0 Single Base Substitution 0 HET FN2609-S Chr4 22164711 T-C 0 0 Single Base Substitution 0 HET FN2609-S Chr4 23814928 T-C 0 0 Single Base Substitution 0 HET FN2609-S Chr4 27223941 A-G 0 0 Single Base Substitution 0 Homo FN2609-S Chr5 10272525 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g17860 retrotransposon protein, putative, unclassified FN2609-S Chr5 1236205 T-A 0 0 Single Base Substitution 0 HET FN2609-S Chr5 24010619 C-T 0 0 Single Base Substitution 0 HET FN2609-S Chr5 249674 G-A 0 0 Single Base Substitution 0 HET FN2609-S Chr5 25226866 C-G 0 0 Single Base Substitution 0 HET FN2609-S Chr5 7049886 A-T 0 0 Single Base Substitution 0 HET FN2609-S Chr5 7325123 T-C 0 0 Single Base Substitution 0 Homo FN2609-S Chr5 7446151 T-A 0 0 Single Base Substitution 0 HET FN2609-S Chr5 9618821 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g16880 retrotransposon protein, putative, Ty3-gypsy subclass FN2609-S Chr6 11613946 11613957 0 0 Deletion 11 HET FN2609-S Chr6 13769146 13769147 0 0 Deletion 1 HET FN2609-S Chr6 16079775 16079785 0 0 Deletion 10 frameshift_variant HET LOC_Os06g28310 retrotransposon protein, putative, unclassified, expressed FN2609-S Chr6 21265308 21265438 0 0 Deletion 130 frameshift_variant HET LOC_Os06g36290 retrotransposon protein, putative, Ty1-copia subclass FN2609-S Chr6 3938475 3938477 0 0 Deletion 2 Homo FN2609-S Chr6 4023257 4023260 0 0 Deletion 3 Homo FN2609-S Chr6 4023644 A-T 0 0 Single Base Substitution 0 Homo FN2609-S Chr6 7554247 T-A 0 0 Single Base Substitution 0 Homo FN2609-S Chr6 8561668 G-A 0 0 Single Base Substitution 0 HET FN2609-S Chr6 995779 995781 0 0 Deletion 2 HET FN2609-S Chr7 12713586 A-G 0 0 Single Base Substitution 0 HET FN2609-S Chr7 19179304 C-T 0 0 Single Base Substitution 0 HET FN2609-S Chr7 19433648 G-A 0 0 Single Base Substitution 0 HET FN2609-S Chr7 27137151 T-C 0 0 Single Base Substitution 0 Homo FN2609-S Chr7 29026348 A-T 0 0 Single Base Substitution 0 Homo FN2609-S Chr7 6560748 C-T 0 0 Single Base Substitution 0 HET FN2609-S Chr8 17601502 17601512 0 0 Deletion 10 frameshift_variant Homo LOC_Os08g28770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2609-S Chr8 20794433 20794458 0 0 Deletion 25 HET FN2609-S Chr8 21289150 21289154 0 0 Deletion 4 HET FN2609-S Chr8 9121896 9121897 0 0 Deletion 1 Homo FN2609-S Chr9 16077580 16077593 0 0 Deletion 13 frameshift_variant Homo LOC_Os09g26554 expressed protein FN2609-S Chr9 17171964 17181668 0 0 Inversion 0 LOC_Os09g28280 gibberellin receptor GID1L2, putative, expressed FN2609-S Chr9 17171998 17181679 0 0 Inversion 0 LOC_Os09g28280 gibberellin receptor GID1L2, putative, expressed FN2609-S Chr9 18245442 T-A 0 0 Single Base Substitution 0 Homo FN2609-S Chr9 2718757 G-C 0 0 Single Base Substitution 0 HET FN2609-S Chr9 71252 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g01030 retrotransposon protein, putative, unclassified, expressed FN2609-S Chr9 8602209 G-A 0 0 Single Base Substitution 0 HET