FN2620-S Chr1 118246 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g01250 transposon protein, putative, unclassified, expressed FN2620-S Chr1 18229001 18273000 0 0 Deletion 43999 LOC_Os01g33110 receptor-like protein kinase 5 precursor, putative, expressed FN2620-S Chr1 18229001 18273000 0 0 Deletion 43999 LOC_Os01g33120 retrotransposon, putative, centromere-specific, expressed FN2620-S Chr1 18229001 18273000 0 0 Deletion 43999 LOC_Os01g33130 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr1 18229001 18273000 0 0 Deletion 43999 LOC_Os01g33136 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr1 18229001 18273000 0 0 Deletion 43999 LOC_Os01g33142 hypothetical protein FN2620-S Chr1 18229001 18273000 0 0 Deletion 43999 LOC_Os01g33150 retrotransposon protein, putative, Ty3-gypsy subclass FN2620-S Chr1 18229001 18273000 0 0 Deletion 43999 LOC_Os01g33160 stress responsive A/B Barrel domain containing protein, expressed FN2620-S Chr1 18229001 18273000 0 0 Deletion 43999 LOC_Os01g33180 hypothetical protein FN2620-S Chr1 18229001 18273000 0 0 Deletion 43999 LOC_Os01g33190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2620-S Chr1 20619513 T-G 0 0 Single Base Substitution 0 HET FN2620-S Chr1 20686699 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g37070 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr1 21508580 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g38330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2620-S Chr1 25653535 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr1 26217511 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g46110 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2620-S Chr1 26217726 26217737 0 0 Deletion 11 HET FN2620-S Chr1 26639260 26639261 0 0 Deletion 1 HET FN2620-S Chr1 35196825 C-A 0 0 Single Base Substitution 0 HET FN2620-S Chr1 37395541 A-T 0 0 Single Base Substitution 0 HET FN2620-S Chr1 42191663 G-T 0 0 Single Base Substitution 0 HET FN2620-S Chr10 10258124 10258126 0 0 Deletion 2 Homo FN2620-S Chr10 10747303 T-C 0 0 Single Base Substitution 0 Homo FN2620-S Chr10 16787454 C-G 0 0 Single Base Substitution 0 HET FN2620-S Chr10 20502436 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr10 6564363 C-T 0 0 Single Base Substitution 0 Homo FN2620-S Chr10 8721360 A-G 0 0 Single Base Substitution 0 HET FN2620-S Chr11 12709401 12709410 0 0 Deletion 9 HET FN2620-S Chr11 15002285 A-G 0 0 Single Base Substitution 0 HET FN2620-S Chr11 16379777 16379780 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os11g28460 expressed protein FN2620-S Chr11 25363851 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr11 8514916 8514921 0 0 Deletion 5 frameshift_variant HET LOC_Os11g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17670 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17690 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17700 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17710 retrotransposon, putative, centromere-specific FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17720 plant protein of unknown function domain containing protein, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17730 expressed protein FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17770 transposon protein, putative, unclassified, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17780 retrotransposon, putative, centromere-specific, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17790 inhibitor I family protein, putative, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17799 expressed protein FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17810 expressed protein FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17830 transposon protein, putative, unclassified, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17870 expressed protein FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17880 expressed protein FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2620-S Chr11 9865001 10041000 0 0 Deletion 175999 LOC_Os11g17900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2620-S Chr12 13954922 A-G 0 0 Single Base Substitution 0 HET FN2620-S Chr12 14201018 14201024 0 0 Deletion 6 inframe_deletion HET LOC_Os12g24750 retrotransposon protein, putative, Ty3-gypsy subclass FN2620-S Chr12 19333051 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR HET LOC_Os12g32040 ZmEBE-1 protein, putative, expressed FN2620-S Chr12 19418735 19418737 0 0 Deletion 2 HET FN2620-S Chr12 24275600 24275606 0 0 Deletion 6 HET FN2620-S Chr12 2531664 2531691 0 0 Deletion 27 disruptive_inframe_deletion HET LOC_Os12g05520 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr12 27184917 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g43760 transposon protein, putative, unclassified, expressed FN2620-S Chr12 9121842 9121851 0 0 Deletion 9 HET FN2620-S Chr2 26380436 26380443 0 0 Deletion 7 frameshift_variant HET LOC_Os02g43700 triacylglycerol lipase like protein, putative, expressed FN2620-S Chr2 30976508 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g50720 transposon protein, putative, unclassified, expressed FN2620-S Chr2 31658087 31658088 0 0 Deletion 1 HET FN2620-S Chr2 32138999 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g52520 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr2 4666731 4666748 0 0 Deletion 17 HET FN2620-S Chr2 5947907 6006970 0 0 Inversion 0 FN2620-S Chr2 5948001 5960000 0 0 Deletion 11999 LOC_Os02g11100 expressed protein FN2620-S Chr2 5948001 5960000 0 0 Deletion 11999 LOC_Os02g11110 flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed FN2620-S Chr2 5959755 6016877 0 0 Inversion 0 FN2620-S Chr2 6007001 6017000 0 0 Deletion 9999 LOC_Os02g11680 glucosyltransferase, putative, expressed FN2620-S Chr2 6164283 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr2 9949463 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr3 17363038 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr3 21303201 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr3 21303202 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g38370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2620-S Chr3 23192679 23192681 0 0 Deletion 2 frameshift_variant HET LOC_Os03g41770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2620-S Chr3 24015555 A-T 0 0 Single Base Substitution 0 HET FN2620-S Chr3 26468015 T-A 0 0 Single Base Substitution 0 HET FN2620-S Chr3 266633 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr3 266634 C-A 0 0 Single Base Substitution 0 HET FN2620-S Chr3 34739038 34739040 0 0 Insertion 2 HET FN2620-S Chr3 35572389 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr3 3791605 3791606 0 0 Deletion 1 HET FN2620-S Chr4 10311771 C-A 0 0 Single Base Substitution 0 HET FN2620-S Chr4 10519335 T-C 0 0 Single Base Substitution 0 HET FN2620-S Chr4 10697076 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr4 10994389 10994399 0 0 Deletion 10 frameshift_variant HET LOC_Os04g19684 methyl-CpG binding domain containing protein, expressed FN2620-S Chr4 14266020 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr4 15434304 T-G 0 0 Single Base Substitution 0 HET FN2620-S Chr4 20389684 G-T 0 0 Single Base Substitution 0 Homo FN2620-S Chr4 3142730 A-G 0 0 Single Base Substitution 0 HET FN2620-S Chr4 34391601 T-A 0 0 Single Base Substitution 0 HET FN2620-S Chr4 35381117 T-A 0 0 Single Base Substitution 0 Homo FN2620-S Chr4 8560677 9014452 0 0 Inversion 0 LOC_Os04g15760 DEFL51 - Defensin and Defensin-like DEFL family, expressed FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16590 retrotransposon protein, putative, Ty3-gypsy subclass FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16620 retrotransposon, putative, centromere-specific, expressed FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16630 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16640 retrotransposon, putative, centromere-specific FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16649 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16660 retrotransposon protein, putative, unclassified FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16670 expressed protein FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16680 fructose-1,6-bisphosphatase, putative, expressed FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16690 expressed protein FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16700 retrotransposon protein, putative, Ty3-gypsy subclass FN2620-S Chr4 9015001 9090000 0 0 Deletion 74999 LOC_Os04g16710 retrotransposon protein, putative, Ty3-gypsy subclass FN2620-S Chr5 10849813 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr5 1380660 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g03360 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr5 16077916 16077921 0 0 Deletion 5 HET FN2620-S Chr5 17711652 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr5 24934456 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr5 28376421 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr6 14975770 14975771 0 0 Insertion 1 Homo FN2620-S Chr6 29496280 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr6 29743389 29743390 0 0 Insertion 1 HET FN2620-S Chr6 8170088 8170115 0 0 Deletion 27 HET FN2620-S Chr6 9622952 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr7 10576426 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr7 10682927 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g18050 RNA-binding motif protein, putative, expressed FN2620-S Chr7 14005388 A-T 0 0 Single Base Substitution 0 HET FN2620-S Chr7 16834043 T-A 0 0 Single Base Substitution 0 HET FN2620-S Chr7 26445094 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr7 5144593 A-G 0 0 Single Base Substitution 0 HET FN2620-S Chr7 5566719 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g10380 expressed protein FN2620-S Chr7 9683885 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g16520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2620-S Chr8 12247260 12247282 0 0 Deletion 22 HET FN2620-S Chr8 13719807 T-G 0 0 Single Base Substitution 0 HET FN2620-S Chr8 14180906 G-T 0 0 Single Base Substitution 0 HET FN2620-S Chr8 14180907 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr8 6051057 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr8 8631580 A-G 0 0 Single Base Substitution 0 HET FN2620-S Chr8 8746794 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr8 9995547 G-C 0 0 Single Base Substitution 0 HET FN2620-S Chr9 14768267 C-A 0 0 Single Base Substitution 0 HET FN2620-S Chr9 22068376 22068378 0 0 Deletion 2 Homo FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04440 DNA-binding protein, putative, expressed FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04450 expressed protein FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04460 retrotransposon protein, putative, unclassified, expressed FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04470 retrotransposon protein, putative, Ty3-gypsy subclass FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04480 hypothetical protein FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04490 inactive receptor kinase At1g27190 precursor, putative, expressed FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04500 expressed protein FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04504 expressed protein FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04508 expressed protein FN2620-S Chr9 2355001 2411000 0 0 Deletion 55999 LOC_Os09g04520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2620-S Chr9 3094461 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr9 3366667 C-A 0 0 Single Base Substitution 0 HET FN2620-S Chr9 5935634 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr9 6239856 6239860 0 0 Deletion 4 HET FN2620-S Chr9 7380322 C-T 0 0 Single Base Substitution 0 HET FN2620-S Chr9 8020454 G-A 0 0 Single Base Substitution 0 HET FN2620-S Chr9 8628140 8628144 0 0 Deletion 4 HET