FN2621-S Chr1 13954125 13954127 0 0 Deletion 2 HET FN2621-S Chr1 14783536 C-A 0 0 Single Base Substitution 0 HET FN2621-S Chr1 14814371 T-C 0 0 Single Base Substitution 0 HET FN2621-S Chr1 16342644 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr1 16835654 T-C 0 0 Single Base Substitution 0 HET FN2621-S Chr1 17172187 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr1 18647259 18647263 0 0 Deletion 4 HET FN2621-S Chr1 18845543 18845544 0 0 Deletion 1 HET FN2621-S Chr1 25305521 A-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g44150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45100 retrotransposon protein, putative, unclassified, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45110 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45120 expressed protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45130 hypothetical protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45140 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45150 expressed protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45160 expressed protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45174 transposon protein, putative, unclassified, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45190 DEAD-box ATP-dependent RNA helicase, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45200 cinnamoyl-CoA reductase-related, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45250 DUF1645 domain containing protein, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45260 expressed protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45274 carbonic anhydrase, chloroplast precursor, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45290 retrotransposon protein, putative, unclassified, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45320 zinc finger family protein, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45340 expressed protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45350 exostosin family protein, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45360 membrane associated DUF588 domain containing protein, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45370 radical SAM enzyme, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45380 protein kinase domain containing protein, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45390 HD domain containing protein 2, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45400 ubiquitin family protein, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45410 expressed protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45420 ubiquitin family protein, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45430 expressed protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45439 expressed protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45450 AAA family ATPase, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45460 serine esterase, putative, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45470 expressed protein FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45480 retrotransposon protein, putative, unclassified, expressed FN2621-S Chr1 25595001 25810000 0 0 Deletion 214999 LOC_Os01g45490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46120 GDSL-like lipase/acylhydrolase, putative, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46130 expressed protein FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46140 expressed protein FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46169 GDSL-like lipase/acylhydrolase, putative, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46200 expressed protein FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46210 GDSL-like lipase/acylhydrolase, putative, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46220 GDSL-like lipase/acylhydrolase, putative, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46230 tetratricopeptide-like helical, putative, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46240 lipase class 3 family protein, putative, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46250 lipase, putative, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46260 expressed protein FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46270 wax synthase isoform 3, putative, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46280 expressed protein FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46290 lipase, putative, expressed FN2621-S Chr1 26219001 26332000 0 0 Deletion 112999 LOC_Os01g46300 hypothetical protein FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46340 chloroplast unusual positioning protein, putative, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46350 proteins of unknown function domain containing protein, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46360 expressed protein FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46370 lipase class 3 family protein, putative, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46380 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46390 DUF538 domain containing protein, putative, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46400 expressed protein FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46410 leaf senescence related protein, putative, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46420 expressed protein FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46430 glycosyl transferase, group 1 domain containing protein, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46440 VQ domain containing protein, putative, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46450 expressed protein FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46460 hypothetical protein FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46470 expressed protein FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46490 hypothetical protein FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46500 OsFBX21 - F-box domain containing protein, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46510 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46530 expressed protein FN2621-S Chr1 26357001 26499000 0 0 Deletion 141999 LOC_Os01g46540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2621-S Chr1 29629311 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr1 32570228 A-G 0 0 Single Base Substitution 0 HET FN2621-S Chr1 34161355 A-G 0 0 Single Base Substitution 0 HET FN2621-S Chr1 42032455 G-T 0 0 Single Base Substitution 0 HET FN2621-S Chr1 4370924 4370931 0 0 Deletion 7 Homo FN2621-S Chr1 5339650 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g10170 expressed protein FN2621-S Chr1 5351099 5351102 0 0 Deletion 3 Homo FN2621-S Chr1 7874328 8192500 0 0 Inversion 0 FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14330 expressed protein FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14340 expressed protein FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14360 expressed protein FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14370 histone acetyltransferase HAC5, putative, expressed FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14380 expressed protein FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14390 expressed protein FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14400 expressed protein FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14410 early light-induced protein, chloroplast precursor, putative, expressed FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14420 RWP-RK domain-containing protein, putative, expressed FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14430 DNA binding protein, putative, expressed FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14440 WRKY1, expressed FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14470 retrotransposon protein, putative, Ty3-gypsy subclass FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14490 retrotransposon protein, putative, unclassified, expressed FN2621-S Chr1 8031001 8126000 0 0 Deletion 94999 LOC_Os01g14510 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed FN2621-S Chr10 10513135 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr10 10601508 10601524 0 0 Deletion 16 HET FN2621-S Chr10 16525738 Chr4 5141362 0 Translocation 0 FN2621-S Chr10 16525738 Chr4 5141362 0 Translocation 0 LOC_Os04g09580 expressed protein FN2621-S Chr10 4669915 A-T 0 0 Single Base Substitution 0 Homo FN2621-S Chr10 7253142 7253144 0 0 Insertion 2 HET FN2621-S Chr10 8702557 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr11 1398425 G-T 0 0 Single Base Substitution 0 HET FN2621-S Chr12 10171916 10171920 0 0 Deletion 4 HET FN2621-S Chr12 13648284 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr12 15917555 T-C 0 0 Single Base Substitution 0 HET FN2621-S Chr12 16320869 T-C 0 0 Single Base Substitution 0 HET FN2621-S Chr12 24792651 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr12 24792652 C-A 0 0 Single Base Substitution 0 HET FN2621-S Chr12 25123908 T-C 0 0 Single Base Substitution 0 HET FN2621-S Chr12 2722649 A-T 0 0 Single Base Substitution 0 HET FN2621-S Chr12 2722651 G-T 0 0 Single Base Substitution 0 HET FN2621-S Chr12 2794381 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr12 387428 A-G 0 0 Single Base Substitution 0 HET FN2621-S Chr12 387429 A-T 0 0 Single Base Substitution 0 HET FN2621-S Chr12 652456 A-T 0 0 Single Base Substitution 0 HET FN2621-S Chr2 11834532 A-C 0 0 Single Base Substitution 0 HET FN2621-S Chr2 17274777 G-A 0 0 Single Base Substitution 0 Homo FN2621-S Chr2 17437547 17437567 0 0 Deletion 20 Homo FN2621-S Chr2 20752817 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr2 23668846 C-T 0 0 Single Base Substitution 0 Homo FN2621-S Chr2 27025150 Chr1 8016906 0 Translocation 0 LOC_Os01g14310 expressed protein FN2621-S Chr2 27025150 Chr1 8016906 0 Translocation 0 LOC_Os02g44599 expressed protein FN2621-S Chr2 33883588 T-C 0 0 Single Base Substitution 0 Homo FN2621-S Chr2 3462734 C-G 0 0 Single Base Substitution 0 HET FN2621-S Chr2 34907236 34907237 0 0 Deletion 1 Homo FN2621-S Chr2 4157048 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr2 492994 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr2 7571211 G-C 0 0 Single Base Substitution 0 HET FN2621-S Chr3 13272616 13272617 0 0 Deletion 1 HET FN2621-S Chr3 22745124 22745125 0 0 Deletion 1 frameshift_variant HET LOC_Os03g40930 expressed protein FN2621-S Chr3 2743426 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr3 29194570 Chr1 31269208 0 Translocation 0 FN2621-S Chr3 30975900 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g54030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2621-S Chr3 6532810 6532812 0 0 Insertion 2 HET FN2621-S Chr3 665035 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr3 7671192 A-T 0 0 Single Base Substitution 0 HET FN2621-S Chr3 8959175 T-C 0 0 Single Base Substitution 0 HET FN2621-S Chr4 1488522 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g03450 retrotransposon protein, putative, unclassified, expressed FN2621-S Chr4 16324553 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr4 17454290 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr4 1803345 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g03950 retrotransposon protein, putative, unclassified, expressed FN2621-S Chr4 19810747 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr4 20804406 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g34350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2621-S Chr4 24801460 T-A 0 0 Single Base Substitution 0 HET FN2621-S Chr4 29904488 T-C 0 0 Single Base Substitution 0 Homo FN2621-S Chr4 7696135 7696141 0 0 Deletion 6 HET FN2621-S Chr4 8403867 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g14950 retrotransposon protein, putative, unclassified, expressed FN2621-S Chr5 10645454 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr5 10864910 Chr1 12873666 0 Translocation 0 FN2621-S Chr5 10864910 Chr1 12873666 0 Translocation 0 LOC_Os01g22900 neutral/alkaline invertase, putative, expressed FN2621-S Chr5 14421979 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr5 16384764 16384770 0 0 Insertion 6 HET FN2621-S Chr5 18092802 A-T 0 0 Single Base Substitution 0 Homo FN2621-S Chr5 18092809 T-G 0 0 Single Base Substitution 0 Homo FN2621-S Chr5 25426608 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr5 26407901 26407904 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os05g45570 expressed protein FN2621-S Chr5 29802570 29802571 0 0 Deletion 1 Homo FN2621-S Chr5 3202898 3202900 0 0 Deletion 2 HET FN2621-S Chr5 4655805 4655813 0 0 Deletion 8 Homo FN2621-S Chr6 14907425 14907426 0 0 Deletion 1 HET FN2621-S Chr6 30992062 30992069 0 0 Deletion 7 HET FN2621-S Chr6 7685876 A-G 0 0 Single Base Substitution 0 HET FN2621-S Chr6 8248423 8664122 0 0 Inversion 0 FN2621-S Chr6 8248423 8664122 0 0 Inversion 0 LOC_Os06g15260 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2621-S Chr6 8248432 8653990 0 0 Inversion 0 FN2621-S Chr6 8379929 Chr1 4549215 0 Translocation 0 FN2621-S Chr7 11204173 11204174 0 0 Deletion 1 frameshift_variant HET LOC_Os07g18910 retrotransposon protein, putative, unclassified FN2621-S Chr7 151451 151456 0 0 Deletion 5 HET FN2621-S Chr7 15730662 15730665 0 0 Deletion 3 HET FN2621-S Chr7 15837925 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr7 27268882 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr7 2789161 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr7 6231732 G-A 0 0 Single Base Substitution 0 HET FN2621-S Chr7 7677868 7677869 0 0 Deletion 1 HET FN2621-S Chr8 15267142 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr8 19041816 C-T 0 0 Single Base Substitution 0 Homo FN2621-S Chr8 26364679 26364687 0 0 Deletion 8 Homo FN2621-S Chr8 27716161 27716173 0 0 Deletion 12 disruptive_inframe_deletion Homo LOC_Os08g44020 rhamnogalacturonate lyase, putative, expressed FN2621-S Chr8 6473905 C-T 0 0 Single Base Substitution 0 HET FN2621-S Chr9 7096952 C-A 0 0 Single Base Substitution 0 HET FN2621-S Chr9 7748588 G-T 0 0 Single Base Substitution 0 HET