FN2640-S Chr1 12868956 T-A 0 0 Single Base Substitution 0 HET FN2640-S Chr1 21506274 G-A 0 0 Single Base Substitution 0 HET FN2640-S Chr1 28883073 G-T 0 0 Single Base Substitution 0 HET FN2640-S Chr1 2955991 A-C 0 0 Single Base Substitution 0 HET FN2640-S Chr1 33187176 T-C 0 0 Single Base Substitution 0 Homo FN2640-S Chr1 33629398 33629414 0 0 Deletion 16 Homo FN2640-S Chr1 38466792 38466796 0 0 Deletion 4 Homo FN2640-S Chr1 40765143 C-T 0 0 Single Base Substitution 0 Homo FN2640-S Chr1 6508286 T-A 0 0 Single Base Substitution 0 Homo FN2640-S Chr1 8864873 C-G 0 0 Single Base Substitution 0 Homo FN2640-S Chr1 9261962 C-G 0 0 Single Base Substitution 0 HET FN2640-S Chr10 11201695 Chr7 29470976 0 Translocation 0 LOC_Os07g49210 helicase conserved C-terminal domain containing protein, expressed FN2640-S Chr10 11201695 Chr7 29470976 0 Translocation 0 LOC_Os10g21810 histidine kinase, putative, expressed FN2640-S Chr10 11201699 Chr7 29470388 0 Translocation 0 LOC_Os07g49210 helicase conserved C-terminal domain containing protein, expressed FN2640-S Chr10 11201699 Chr7 29470388 0 Translocation 0 LOC_Os10g21810 histidine kinase, putative, expressed FN2640-S Chr10 2493505 2493506 0 0 Insertion 1 Homo FN2640-S Chr10 4252605 4859071 0 0 Inversion 0 LOC_Os10g07970 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed FN2640-S Chr10 4252605 4859071 0 0 Inversion 0 LOC_Os10g08980 zeaxanthin cleavage dioxygenase, chromoplast precursor, putative, expressed FN2640-S Chr10 4252612 4859072 0 0 Inversion 0 LOC_Os10g07970 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed FN2640-S Chr10 4252612 4859072 0 0 Inversion 0 LOC_Os10g08980 zeaxanthin cleavage dioxygenase, chromoplast precursor, putative, expressed FN2640-S Chr10 4979115 C-T 0 0 Single Base Substitution 0 Homo FN2640-S Chr11 13326442 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g23160 retrotransposon protein, putative, unclassified, expressed FN2640-S Chr11 17839495 17839500 0 0 Deletion 5 Homo FN2640-S Chr11 25434063 25434065 0 0 Deletion 2 frameshift_variant Homo LOC_Os11g42220 laccase precursor protein, putative, expressed FN2640-S Chr11 27051931 27051941 0 0 Deletion 10 HET FN2640-S Chr11 27688464 Chr5 23584155 0 Translocation 0 LOC_Os05g40150 RGH2B, putative, expressed FN2640-S Chr11 27688464 Chr5 23584155 0 Translocation 0 LOC_Os11g45750 WRKY125, expressed FN2640-S Chr12 4151183 C-T 0 0 Single Base Substitution 0 Homo FN2640-S Chr12 8985361 T-C 0 0 Single Base Substitution 0 HET FN2640-S Chr2 10743652 T-C 0 0 Single Base Substitution 0 HET FN2640-S Chr2 21468724 21543562 0 0 Inversion 0 LOC_Os02g35730 expressed protein FN2640-S Chr2 21468762 21543570 0 0 Inversion 0 LOC_Os02g35730 expressed protein FN2640-S Chr2 27589050 T-A 0 0 Single Base Substitution 0 Homo FN2640-S Chr2 5517386 G-T 0 0 Single Base Substitution 0 HET FN2640-S Chr2 9323001 9345000 0 0 Deletion 21999 LOC_Os02g16370 retrotransposon protein, putative, unclassified, expressed FN2640-S Chr2 9323001 9345000 0 0 Deletion 21999 LOC_Os02g16380 retrotransposon protein, putative, unclassified FN2640-S Chr2 9323001 9345000 0 0 Deletion 21999 LOC_Os02g16390 transposon protein, putative, unclassified, expressed FN2640-S Chr3 13142692 G-A 0 0 Single Base Substitution 0 HET FN2640-S Chr3 13731217 C-T 0 0 Single Base Substitution 0 HET FN2640-S Chr3 14345554 A-G 0 0 Single Base Substitution 0 Homo FN2640-S Chr3 14489674 C-T 0 0 Single Base Substitution 0 HET FN2640-S Chr3 16667504 A-G 0 0 Single Base Substitution 0 HET FN2640-S Chr3 19872110 G-T 0 0 Single Base Substitution 0 HET FN2640-S Chr3 19872111 G-T 0 0 Single Base Substitution 0 HET FN2640-S Chr3 32633507 32633508 0 0 Deletion 1 HET FN2640-S Chr3 35080943 A-G 0 0 Single Base Substitution 0 HET FN2640-S Chr3 8607277 T-C 0 0 Single Base Substitution 0 HET FN2640-S Chr4 12728899 G-C 0 0 Single Base Substitution 0 Homo FN2640-S Chr4 1455549 C-G 0 0 Single Base Substitution 0 HET FN2640-S Chr4 16986652 G-T 0 0 Single Base Substitution 0 HET FN2640-S Chr4 19342479 T-C 0 0 Single Base Substitution 0 HET FN2640-S Chr4 19652932 19652933 0 0 Deletion 1 frameshift_variant HET LOC_Os04g32620 ethylene-responsive transcription factor ERF114, putative, expressed FN2640-S Chr4 2560312 C-G 0 0 Single Base Substitution 0 HET FN2640-S Chr4 25990483 Chr2 26794030 0 Translocation 0 LOC_Os04g43880 expressed protein FN2640-S Chr4 34028171 G-T 0 0 Single Base Substitution 0 HET FN2640-S Chr5 10303904 10303907 0 0 Deletion 3 HET FN2640-S Chr5 11075749 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g19080 retrotransposon protein, putative, unclassified, expressed FN2640-S Chr5 19476379 19476381 0 0 Deletion 2 HET FN2640-S Chr5 21515645 21515668 0 0 Deletion 23 HET FN2640-S Chr5 27856343 G-T 0 0 Single Base Substitution 0 HET FN2640-S Chr5 28813197 A-T 0 0 Single Base Substitution 0 HET FN2640-S Chr5 7827440 G-A 0 0 Single Base Substitution 0 HET FN2640-S Chr5 7970218 7970227 0 0 Deletion 9 HET FN2640-S Chr5 9878295 C-T 0 0 Single Base Substitution 0 HET FN2640-S Chr6 12229894 C-T 0 0 Single Base Substitution 0 HET FN2640-S Chr6 13889185 C-A 0 0 Single Base Substitution 0 HET FN2640-S Chr6 15218204 T-A 0 0 Single Base Substitution 0 HET FN2640-S Chr6 21950536 Chr1 13413503 0 Translocation 0 FN2640-S Chr6 23826380 C-G 0 0 Single Base Substitution 0 Homo FN2640-S Chr6 30289670 30289679 0 0 Deletion 9 inframe_deletion Homo LOC_Os06g50020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2640-S Chr7 21945609 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g36670 retrotransposon protein, putative, unclassified, expressed FN2640-S Chr7 29469001 29484000 0 0 Deletion 14999 LOC_Os07g49210 helicase conserved C-terminal domain containing protein, expressed FN2640-S Chr7 29469001 29484000 0 0 Deletion 14999 LOC_Os07g49220 expressed protein FN2640-S Chr7 29469001 29484000 0 0 Deletion 14999 LOC_Os07g49230 ubiquitin-activating enzyme, putative, expressed FN2640-S Chr7 7016763 A-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os07g12360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2640-S Chr8 11631622 11631623 0 0 Deletion 1 HET FN2640-S Chr8 17299160 Chr4 18885956 0 Translocation 0 LOC_Os08g28350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2640-S Chr8 23691729 T-C 0 0 Single Base Substitution 0 HET FN2640-S Chr8 4982367 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g08610 retrotransposon protein, putative, unclassified, expressed FN2640-S Chr9 22678017 Chr1 43247794 0 Translocation 0 LOC_Os01g74670 expressed protein FN2640-S Chr9 22678017 Chr1 43247794 0 Translocation 0 LOC_Os09g39440 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed FN2640-S Chr9 22684825 Chr7 29470387 0 Translocation 0 LOC_Os07g49210 helicase conserved C-terminal domain containing protein, expressed FN2640-S Chr9 22684825 Chr7 29470387 0 Translocation 0 LOC_Os09g39462 nucleic acid binding protein, putative, expressed FN2640-S Chr9 22684837 22820211 0 0 Inversion 0 LOC_Os09g39462 nucleic acid binding protein, putative, expressed FN2640-S Chr9 22688211 C-T 0 0 Single Base Substitution 0 HET FN2640-S Chr9 22820211 Chr1 43247741 0 Translocation 0 FN2640-S Chr9 22820211 Chr1 43247741 0 Translocation 0 LOC_Os01g74670 expressed protein FN2640-S Chr9 8846221 C-T 0 0 Single Base Substitution 0 HET FN2640-S Chr9 950388 C-T 0 0 Single Base Substitution 0 HET