FN2646-S-1 Chr1 2770 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2646-S-1 Chr1 30160678 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr1 34063705 34063713 0 0 Deletion 8 INTERGENIC HOMO FN2646-S-1 Chr1 3600861 3600870 0 0 Deletion 9 CODON_DELETION HET LOC_Os01g07530 uncharacterized glycosyltransferase, putative, expressed FN2646-S-1 Chr1 36921033 36921034 0 0 Deletion 1 upstream_gene_variant HET FN2646-S-1 Chr1 38878551 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2646-S-1 Chr1 39393309 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr1 6360742 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2646-S-1 Chr1 7763205 7763205 0 0 Insertion 2 upstream_gene_variant 1-Jan FN2646-S-1 Chr10 13888649 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr10 13989774 14053245 0 0 Inversion 63471 FN2646-S-1 Chr10 13989784 14053252 0 0 Inversion 63468 FN2646-S-1 Chr10 3303955 3303956 0 0 Deletion 1 frameshift_variant HET LOC_Os10g06430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2646-S-1 Chr10 8712397 8712397 0 0 Insertion 1 upstream_gene_variant HET FN2646-S-1 Chr11 3077824 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr11 7492567 Chr9 9620712 0 Translocation 0 LOC_Os09g15750 proteasome/cyclosome repeat containing protein, expressed FN2646-S-1 Chr11 7492575 Chr9 9615444 0 Translocation 0 FN2646-S-1 Chr11 9284261 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr12 10109874 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr12 12801323 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr12 15725335 15725335 0 0 Insertion 1 upstream_gene_variant HET FN2646-S-1 Chr12 3072543 3072589 0 0 Deletion 46 INTERGENIC HET FN2646-S-1 Chr12 3418570 3418570 0 0 Insertion 2 INTERGENIC HET FN2646-S-1 Chr12 5494573 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2646-S-1 Chr2 10597034 10597038 0 0 Deletion 4 INTERGENIC HOMO FN2646-S-1 Chr2 11348649 11348653 0 0 Deletion 4 INTERGENIC HOMO FN2646-S-1 Chr2 19647206 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr2 20632024 21342612 0 0 Inversion 710588 FN2646-S-1 Chr2 20632032 21342627 0 0 Inversion 710595 FN2646-S-1 Chr2 30848691 G-T 0 0 Single Base Substitution 0 INTRON HET FN2646-S-1 Chr2 35257524 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g57540 60S ribosomal protein L28-1, putative, expressed FN2646-S-1 Chr2 35257528 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g57540 60S ribosomal protein L28-1, putative, expressed FN2646-S-1 Chr2 5233208 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr2 6601876 6601876 0 0 Insertion 2 INTRON HET FN2646-S-1 Chr3 16049928 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr3 19458240 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g34170 retrotransposon protein, putative, unclassified, expressed FN2646-S-1 Chr3 24619645 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr3 25092616 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr3 25452680 25452732 0 0 Deletion 52 upstream_gene_variant HET FN2646-S-1 Chr3 25527866 25527866 0 0 Insertion 10 upstream_gene_variant HET FN2646-S-1 Chr3 26736385 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr3 29833988 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr3 31405544 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2646-S-1 Chr3 32336497 T-C 0 0 Single Base Substitution 0 INTRON HET FN2646-S-1 Chr3 3955333 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr3 3955334 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr3 7408515 7408541 0 0 Deletion 26 upstream_gene_variant HET FN2646-S-1 Chr4 11152010 11152021 0 0 Deletion 11 INTERGENIC HOMO FN2646-S-1 Chr4 13040691 13040691 0 0 Insertion 1 upstream_gene_variant HET FN2646-S-1 Chr4 13105743 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2646-S-1 Chr4 13728986 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2646-S-1 Chr4 15273890 15273890 0 0 Insertion 1 upstream_gene_variant HET FN2646-S-1 Chr4 15980267 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr4 20009650 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr4 25857462 25857473 0 0 Deletion 11 INTRON HOMO FN2646-S-1 Chr4 26161210 26161218 0 0 Deletion 8 downstream_gene_variant HET FN2646-S-1 Chr4 30339357 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2646-S-1 Chr4 33165043 33165043 0 0 Insertion 10 upstream_gene_variant HET FN2646-S-1 Chr4 33538382 33538383 0 0 Deletion 1 upstream_gene_variant HET FN2646-S-1 Chr4 3703397 3703397 0 0 Insertion 62 intergenic_region HET FN2646-S-1 Chr4 8576183 8576183 0 0 Insertion 3 upstream_gene_variant HET FN2646-S-1 Chr4 8739129 8739131 0 0 Deletion 2 intron_variant HET FN2646-S-1 Chr5 10220132 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g17780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2646-S-1 Chr5 24646799 24646800 0 0 Deletion 1 INTERGENIC HET FN2646-S-1 Chr5 25995137 25995139 0 0 Deletion 2 upstream_gene_variant HET FN2646-S-1 Chr5 4282150 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr5 6012010 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr6 10548519 10548579 0 0 Deletion 60 upstream_gene_variant HET FN2646-S-1 Chr6 11476300 11476301 0 0 Deletion 1 INTERGENIC HET FN2646-S-1 Chr6 14582280 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr6 24225913 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2646-S-1 Chr6 29570951 29570955 0 0 Deletion 4 INTERGENIC HET FN2646-S-1 Chr7 10980846 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2646-S-1 Chr7 11058027 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr7 11657218 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr7 11811435 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g20450 retrotransposon protein, putative, unclassified, expressed FN2646-S-1 Chr7 17096930 17096962 0 0 Deletion 32 INTERGENIC HET FN2646-S-1 Chr7 2256247 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr7 2256248 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr7 2256249 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr7 9436220 C-T 0 0 Single Base Substitution 0 INTRON HET FN2646-S-1 Chr7 9727399 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr8 11096287 11096297 0 0 Deletion 10 FRAME_SHIFT HET LOC_Os08g18100 retrotransposon protein, putative, unclassified, expressed FN2646-S-1 Chr8 1271839 1271923 0 0 Deletion 84 upstream_gene_variant HET FN2646-S-1 Chr8 23473901 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr8 25411189 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr8 27473618 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2646-S-1 Chr8 2780851 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr8 28216891 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr8 5337766 5337767 0 0 Deletion 1 upstream_gene_variant HET FN2646-S-1 Chr8 5740774 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr8 7849030 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr8 8482103 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr9 1255021 1255021 0 0 Insertion 22 upstream_gene_variant HET FN2646-S-1 Chr9 15397337 15397338 0 0 Deletion 1 INTERGENIC HOMO FN2646-S-1 Chr9 15888272 15888278 0 0 Deletion 6 INTERGENIC HET FN2646-S-1 Chr9 18119528 18119532 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os09g29810 retrotransposon protein, putative, unclassified, expressed FN2646-S-1 Chr9 21423421 21423423 0 0 Deletion 2 INTERGENIC HET FN2646-S-1 Chr9 2974182 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr9 4582146 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr9 5343385 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2646-S-1 Chr9 9630881 C-A 0 0 Single Base Substitution 0 INTRON HET