FN2647-S Chr1 14627508 G-A 0 0 Single Base Substitution 0 INTRON HET FN2647-S Chr1 15768827 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr1 26325877 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr1 35732817 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2647-S Chr1 36846411 36846411 0 0 Insertion 2 INTERGENIC HET FN2647-S Chr1 3958249 A-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2647-S Chr1 39768623 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g68430 transposon protein, putative, unclassified FN2647-S Chr1 40421947 40421947 0 0 Insertion 4 INTERGENIC HET FN2647-S Chr1 7431808 8272763 0 0 Inversion 840955 FN2647-S Chr1 7507478 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g13470 KH domain containing protein, putative, expressed FN2647-S Chr1 8342436 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr1 9490977 9490977 0 0 Insertion 10 upstream_gene_variant HET FN2647-S Chr10 1181898 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr10 12115634 C-A 0 0 Single Base Substitution 0 INTRON HET FN2647-S Chr10 12291178 12291179 0 0 Deletion 1 frameshift_variant HET LOC_Os10g23990 transposon protein, putative, CACTA, En/Spm sub-class FN2647-S Chr10 12814949 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr10 14363390 Chr8 27766504 0 Translocation 0 FN2647-S Chr10 14363404 Chr8 27768594 0 Translocation 0 FN2647-S Chr10 17070057 17070065 0 0 Deletion 8 INTERGENIC HET FN2647-S Chr10 18335018 G-A 0 0 Single Base Substitution 0 INTRON HET FN2647-S Chr10 19950463 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr10 20981198 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr10 22953981 22953982 0 0 Deletion 1 INTERGENIC HET FN2647-S Chr10 305090 A-T 0 0 Single Base Substitution 0 INTRON HET FN2647-S Chr10 5756868 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr10 5893123 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr10 6227446 6227462 0 0 Deletion 16 upstream_gene_variant HET FN2647-S Chr10 921349 921350 0 0 Deletion 1 upstream_gene_variant HET FN2647-S Chr11 1005502 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr11 10543036 10543038 0 0 Deletion 2 INTERGENIC HET FN2647-S Chr11 10882934 10882934 0 0 Insertion 1 INTERGENIC HET FN2647-S Chr11 13249491 13249494 0 0 Deletion 3 INTRON HET FN2647-S Chr11 13954011 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr11 15389280 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr11 21477980 T-C 0 0 Single Base Substitution 0 INTRON HET FN2647-S Chr11 21531714 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr11 25113040 25113040 0 0 Insertion 10 upstream_gene_variant HET FN2647-S Chr11 3357703 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g06840 ZOS11-01 - C2H2 zinc finger protein, expressed FN2647-S Chr11 4697643 4697644 0 0 Deletion 1 upstream_gene_variant HET FN2647-S Chr12 12386869 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22020 expressed protein FN2647-S Chr12 14358316 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr12 15053756 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr12 21631046 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr12 24866285 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr12 24885607 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr12 25059687 25059687 0 0 Insertion 2 upstream_gene_variant HET FN2647-S Chr12 7736618 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g13720 Plant PDR ABC transporter associated domain containing protein, expressed FN2647-S Chr12 9534073 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g16650 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed FN2647-S Chr2 15223241 15223254 0 0 Deletion 13 INTERGENIC HET FN2647-S Chr2 19272436 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2647-S Chr2 29797546 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr2 30158869 30158895 0 0 Deletion 26 INTERGENIC HOMO FN2647-S Chr2 33123730 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr2 35076734 35076734 0 0 Insertion 2 INTERGENIC HET FN2647-S Chr2 9442938 9442938 0 0 Insertion 19 upstream_gene_variant HET FN2647-S Chr2 9970951 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr3 19682371 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr3 21198438 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g38170 expressed protein FN2647-S Chr3 22273445 22273447 0 0 Deletion 2 INTERGENIC HOMO FN2647-S Chr3 22569038 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr3 2307734 2307734 0 0 Insertion 2 INTERGENIC HOMO FN2647-S Chr3 23449384 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr3 24231768 24231768 0 0 Insertion 10 upstream_gene_variant HET FN2647-S Chr3 26017064 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr3 28182656 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g49510 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed FN2647-S Chr3 30329537 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr3 30951131 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr3 36373807 36402433 0 0 Inversion 28626 FN2647-S Chr3 36373820 36374198 0 0 Inversion 378 FN2647-S Chr3 36376904 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2647-S Chr3 7708653 7708653 0 0 Insertion 26 downstream_gene_variant HET FN2647-S Chr3 891335 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr3 9910661 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr4 13572941 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g23739 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2647-S Chr4 13572942 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2647-S Chr4 1413254 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr4 16122930 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr4 16318392 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr4 17370205 17370209 0 0 Deletion 4 INTERGENIC HOMO FN2647-S Chr4 1746738 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr4 19080774 19080784 0 0 Deletion 10 INTERGENIC HOMO FN2647-S Chr4 29077100 29077105 0 0 Deletion 5 INTERGENIC HET FN2647-S Chr4 32713299 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g55020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2647-S Chr4 33536468 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr4 33765070 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2647-S Chr4 35331886 T-C 0 0 Single Base Substitution 0 INTRON HET FN2647-S Chr4 5770799 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr4 6606840 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2647-S Chr4 7868226 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr5 13623931 A-G 0 0 Single Base Substitution 0 INTRON HET FN2647-S Chr5 14007130 14007130 0 0 Insertion 16 upstream_gene_variant HET FN2647-S Chr5 17005326 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr5 18324433 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr5 20603982 20603998 0 0 Deletion 16 upstream_gene_variant HET FN2647-S Chr5 21034196 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g35400 DnaK family protein, putative, expressed FN2647-S Chr5 2183723 C-T 0 0 Single Base Substitution 0 INTRON HET FN2647-S Chr5 21990369 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g37580 retrotransposon protein, putative, unclassified, expressed FN2647-S Chr5 25134414 25134416 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os05g43220 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2647-S Chr5 25474599 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr5 28022850 28022855 0 0 Deletion 5 INTERGENIC HET FN2647-S Chr5 2925037 2925037 0 0 Insertion 14 upstream_gene_variant HET FN2647-S Chr5 7616070 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g13740 retrotransposon protein, putative, unclassified FN2647-S Chr5 9954684 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr6 10272186 10272194 0 0 Deletion 8 INTERGENIC HET FN2647-S Chr6 10723124 10723125 0 0 Deletion 1 upstream_gene_variant HET FN2647-S Chr6 10742687 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr6 11716334 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g20390 expressed protein FN2647-S Chr6 12869957 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2647-S Chr6 13269268 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr6 13798969 13798970 0 0 Deletion 1 intergenic_region HET FN2647-S Chr6 17532837 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30600 expressed protein FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30620 expressed protein FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30630 hypothetical protein FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30640 cytochrome P450, putative, expressed FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30650 expressed protein FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30660 hypothetical protein FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30670 retrotransposon protein, putative, unclassified, expressed FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30680 WD domain, G-beta repeat domain containing protein, expressed FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30690 alcohol oxidase-related, putative, expressed FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g30700 transposon protein, putative, unclassified, expressed FN2647-S Chr6 17698001 17799000 0 0 Deletion 100999 LOC_Os06g35070 expressed protein FN2647-S Chr6 19917114 19917120 0 0 Deletion 6 INTERGENIC HET FN2647-S Chr6 20394192 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g35040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2647-S Chr6 21653431 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr6 23881583 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr6 26367669 26367677 0 0 Deletion 8 INTRON HET FN2647-S Chr6 6547923 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr6 7176349 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr7 10913939 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2647-S Chr7 11449826 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr7 17435436 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr7 18357799 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr7 20357082 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr7 26867327 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g45020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2647-S Chr7 646692 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN2647-S Chr7 837814 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr8 11910550 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g19880 retrotransposon protein, putative, Ty3-gypsy subclass FN2647-S Chr8 12852078 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr8 15584835 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr8 17059792 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr8 18080379 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr8 19009281 19009293 0 0 Deletion 12 upstream_gene_variant HET FN2647-S Chr8 19048950 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2647-S Chr8 21865655 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr8 2202130 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr8 22680582 Chr7 23002853 0 Translocation 0 LOC_Os08g35970 transposon protein, putative, Mutator sub-class, expressed FN2647-S Chr8 23148918 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g36680 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed FN2647-S Chr8 23825145 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr8 27265345 27766499 0 0 Inversion 501154 FN2647-S Chr8 27265369 Chr1 18068368 0 Translocation 0 FN2647-S Chr8 27670187 27670195 0 0 Deletion 8 FRAME_SHIFT HET LOC_Os08g43870 carrier, putative, expressed FN2647-S Chr8 5470003 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr8 9964208 9964210 0 0 Deletion 2 INTERGENIC HET FN2647-S Chr9 11624397 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2647-S Chr9 13941064 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr9 15668747 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr9 15668751 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr9 15668755 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2647-S Chr9 16540012 Chr6 17497729 0 Translocation 0 FN2647-S Chr9 21976012 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr9 22067407 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2647-S Chr9 22211832 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2647-S Chr9 6621135 6621151 0 0 Deletion 16 upstream_gene_variant HET FN2647-S Chr9 7848526 7848533 0 0 Deletion 7 UTR_5_PRIME HET FN2647-S Chr9 8007969 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2647-S Chr9 8155493 8172110 0 0 Inversion 16617 FN2647-S Chr9 8155509 8172109 0 0 Inversion 16600 FN2647-S Chr9 8377464 8377468 0 0 Deletion 4 INTERGENIC HET