FN2648-S-1 Chr1 10704774 G-A 0 0 Single Base Substitution 0 INTRON HET FN2648-S-1 Chr1 12473007 12473008 0 0 Deletion 1 INTERGENIC HET FN2648-S-1 Chr1 14665619 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2648-S-1 Chr1 17191145 17191149 0 0 Deletion 4 upstream_gene_variant HET FN2648-S-1 Chr1 22729856 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2648-S-1 Chr1 26245482 26245484 0 0 Deletion 2 INTERGENIC HOMO FN2648-S-1 Chr1 30799356 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr1 31339955 31339962 0 0 Deletion 7 INTERGENIC HOMO FN2648-S-1 Chr1 31355889 31355890 0 0 Deletion 1 INTERGENIC HOMO FN2648-S-1 Chr1 7813719 7813721 0 0 Deletion 2 INTERGENIC HOMO FN2648-S-1 Chr1 8472791 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2648-S-1 Chr10 10023519 10023519 0 0 Insertion 2 INTERGENIC HET FN2648-S-1 Chr10 11709908 Chr2 18066734 0 Translocation 0 FN2648-S-1 Chr10 14813865 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g28470 retrotransposon protein, putative, unclassified, expressed FN2648-S-1 Chr10 6278960 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr10 7020206 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2648-S-1 Chr10 7579442 C-T 0 0 Single Base Substitution 0 INTRON HET FN2648-S-1 Chr11 13825554 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2648-S-1 Chr11 15992721 15992722 0 0 Deletion 1 upstream_gene_variant HET FN2648-S-1 Chr11 23956730 23956731 0 0 Deletion 1 INTERGENIC HET FN2648-S-1 Chr11 25143238 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr11 26626168 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr11 4318184 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr11 4650373 4650373 0 0 Insertion 20 upstream_gene_variant HET FN2648-S-1 Chr12 10776927 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr12 11561154 Chr2 29427397 0 Translocation 0 FN2648-S-1 Chr12 13074191 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g23120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2648-S-1 Chr12 14104001 14166000 0 0 Deletion 61999 LOC_Os12g24650 leucine aminopeptidase, chloroplast precursor, putative, expressed FN2648-S-1 Chr12 14104001 14166000 0 0 Deletion 61999 LOC_Os12g24659 hypothetical protein FN2648-S-1 Chr12 14104001 14166000 0 0 Deletion 61999 LOC_Os12g24670 expressed protein FN2648-S-1 Chr12 14104001 14166000 0 0 Deletion 61999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S-1 Chr12 14104001 14166000 0 0 Deletion 61999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2648-S-1 Chr12 14104001 14166000 0 0 Deletion 61999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN2648-S-1 Chr12 14104001 14166000 0 0 Deletion 61999 LOC_Os12g39440 expressed protein FN2648-S-1 Chr12 14456304 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2648-S-1 Chr12 14596763 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr12 1774708 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2648-S-1 Chr12 25183530 25183553 0 0 Deletion 23 INTERGENIC HET FN2648-S-1 Chr12 3582702 3582702 0 0 Insertion 2 UTR_3_PRIME HET FN2648-S-1 Chr12 4433004 4433004 0 0 Insertion 1 upstream_gene_variant HET FN2648-S-1 Chr12 9427676 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr2 14689894 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr2 15275271 G-A 0 0 Single Base Substitution 0 INTRON HET FN2648-S-1 Chr2 1893387 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2648-S-1 Chr2 23214240 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g38392 NBS-LRR disease resistance protein, putative, expressed FN2648-S-1 Chr2 25774240 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2648-S-1 Chr2 26507445 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g43906 ceramide kinase-related, putative, expressed FN2648-S-1 Chr2 26507452 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g43906 ceramide kinase-related, putative, expressed FN2648-S-1 Chr2 27431306 27501701 0 0 Inversion 70395 FN2648-S-1 Chr2 35714688 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN2648-S-1 Chr2 4064087 4064089 0 0 Deletion 2 upstream_gene_variant HET FN2648-S-1 Chr2 7074065 7074081 0 0 Deletion 16 upstream_gene_variant HET FN2648-S-1 Chr2 9980121 9980121 0 0 Insertion 26 downstream_gene_variant HET FN2648-S-1 Chr3 10497520 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr3 12233342 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2648-S-1 Chr3 12666713 12666717 0 0 Deletion 4 INTERGENIC HOMO FN2648-S-1 Chr3 22292358 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g40110 nop14-like family protein, expressed FN2648-S-1 Chr3 2425653 2425653 0 0 Insertion 1 downstream_gene_variant HET FN2648-S-1 Chr3 32151790 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g56400 pentatricopeptide, putative, expressed FN2648-S-1 Chr3 35663492 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2648-S-1 Chr3 9464333 9464337 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os03g17030 polyadenylate-binding protein, putative, expressed FN2648-S-1 Chr4 12800103 C-A 0 0 Single Base Substitution 0 INTRON HET FN2648-S-1 Chr4 2061693 2061695 0 0 Deletion 2 INTERGENIC HET FN2648-S-1 Chr4 2427569 C-T 0 0 Single Base Substitution 0 INTRON HET FN2648-S-1 Chr4 24762958 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr4 25268617 25268625 0 0 Deletion 8 INTERGENIC HOMO FN2648-S-1 Chr4 26150540 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2648-S-1 Chr4 2715392 2783946 0 0 Inversion 68554 LOC_Os04g05420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S-1 Chr4 2715417 2783955 0 0 Inversion 68538 LOC_Os04g05420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S-1 Chr4 27284930 27284931 0 0 Deletion 1 INTRON HOMO FN2648-S-1 Chr4 30427457 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr4 35285837 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2648-S-1 Chr4 3726413 3726413 0 0 Insertion 1 upstream_gene_variant HET FN2648-S-1 Chr5 10335794 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2648-S-1 Chr5 10873678 10873689 0 0 Deletion 11 INTERGENIC HET FN2648-S-1 Chr5 12129925 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr5 13350245 13350245 0 0 Insertion 1 downstream_gene_variant HET FN2648-S-1 Chr5 17855227 17855229 0 0 Deletion 2 INTERGENIC HET FN2648-S-1 Chr5 21863695 21863696 0 0 Deletion 1 upstream_gene_variant HET FN2648-S-1 Chr5 22971043 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g39170 expressed protein FN2648-S-1 Chr5 25108743 25108745 0 0 Deletion 2 INTRON HET FN2648-S-1 Chr5 27200736 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2648-S-1 Chr5 28402682 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr5 28808740 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr5 29686691 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr5 5594979 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr6 11958209 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr6 16017646 16017646 0 0 Insertion 1 intron_variant HET FN2648-S-1 Chr6 16421327 C-A 0 0 Single Base Substitution 0 INTRON HET FN2648-S-1 Chr6 20121665 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g34600 retrotransposon protein, putative, Ty3-gypsy subclass FN2648-S-1 Chr6 23566507 23566507 0 0 Insertion 1 downstream_gene_variant HET FN2648-S-1 Chr6 5909972 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr6 6002346 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr6 8507675 8507675 0 0 Insertion 24 upstream_gene_variant HET FN2648-S-1 Chr6 8622641 8622642 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os06g15220 hypothetical protein FN2648-S-1 Chr7 1082946 1082975 0 0 Deletion 29 SPLICE_SITE_REGION HOMO FN2648-S-1 Chr7 176485 176488 0 0 Deletion 3 upstream_gene_variant HET FN2648-S-1 Chr7 20887274 20887276 0 0 Deletion 2 INTERGENIC HET FN2648-S-1 Chr7 2907825 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2648-S-1 Chr7 4758388 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2648-S-1 Chr7 9541200 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr8 17094992 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2648-S-1 Chr8 19175431 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g31060 phospholipase D alpha 1, putative, expressed FN2648-S-1 Chr8 21665001 21746000 0 0 Deletion 80999 LOC_Os08g34530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S-1 Chr8 21665001 21746000 0 0 Deletion 80999 LOC_Os08g34540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S-1 Chr8 21665001 21746000 0 0 Deletion 80999 LOC_Os08g34550 RING-H2 finger protein, putative, expressed FN2648-S-1 Chr8 21665001 21746000 0 0 Deletion 80999 LOC_Os08g34560 expressed protein FN2648-S-1 Chr8 21665001 21746000 0 0 Deletion 80999 LOC_Os08g34570 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein, expressed FN2648-S-1 Chr8 21665001 21746000 0 0 Deletion 80999 LOC_Os08g34580 trehalose-6-phosphate synthase, putative, expressed FN2648-S-1 Chr8 21665001 21746000 0 0 Deletion 80999 LOC_Os08g34590 transposon protein, putative, CACTA, En/Spm sub-class FN2648-S-1 Chr8 21665001 21746000 0 0 Deletion 80999 LOC_Os08g34600 transposon protein, putative, CACTA, En/Spm sub-class FN2648-S-1 Chr8 21665001 21746000 0 0 Deletion 80999 LOC_Os08g40310 transposon protein, putative, unclassified, expressed FN2648-S-1 Chr8 24110107 T-C 0 0 Single Base Substitution 0 INTRON HET FN2648-S-1 Chr8 28324506 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr8 7184452 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2648-S-1 Chr8 7676779 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2648-S-1 Chr9 14587791 15506068 0 0 Inversion 918277 FN2648-S-1 Chr9 14587798 15506075 0 0 Inversion 918277