FN2648-S Chr1 12473007 12473008 0 0 Deletion 1 Homo FN2648-S Chr1 14665619 G-A 0 0 Single Base Substitution 0 HET FN2648-S Chr1 22729856 C-T 0 0 Single Base Substitution 0 Homo FN2648-S Chr1 26245482 26245484 0 0 Deletion 2 Homo FN2648-S Chr1 28721690 28721732 0 0 Deletion 42 disruptive_inframe_deletion Homo LOC_Os01g49980 retrotransposon protein, putative, unclassified, expressed FN2648-S Chr1 30638613 C-T 0 0 Single Base Substitution 0 HET FN2648-S Chr1 31339955 31339962 0 0 Deletion 7 Homo FN2648-S Chr1 31355889 31355890 0 0 Deletion 1 HET FN2648-S Chr1 33577823 33577825 0 0 Insertion 2 HET FN2648-S Chr1 34260188 T-C 0 0 Single Base Substitution 0 HET FN2648-S Chr1 7813719 7813721 0 0 Deletion 2 Homo FN2648-S Chr1 8472791 C-G 0 0 Single Base Substitution 0 Homo FN2648-S Chr10 14813865 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g28470 retrotransposon protein, putative, unclassified, expressed FN2648-S Chr10 17414700 17414702 0 0 Deletion 2 HET FN2648-S Chr10 2972382 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g05890 expressed protein FN2648-S Chr10 7020206 G-A 0 0 Single Base Substitution 0 Homo FN2648-S Chr10 7579442 C-T 0 0 Single Base Substitution 0 HET FN2648-S Chr11 13825554 G-C 0 0 Single Base Substitution 0 HET FN2648-S Chr11 22293402 22293403 0 0 Deletion 1 frameshift_variant HET LOC_Os11g37710 retrotransposon protein, putative, unclassified, expressed FN2648-S Chr11 23956730 23956731 0 0 Deletion 1 HET FN2648-S Chr11 24445386 Chr4 29686988 0 Translocation 0 LOC_Os04g49790 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2648-S Chr11 24445386 Chr4 29686988 0 Translocation 0 LOC_Os11g40860 retrotransposon protein, putative, unclassified, expressed FN2648-S Chr11 25143238 G-C 0 0 Single Base Substitution 0 HET FN2648-S Chr11 26331021 Chr10 20813219 0 Translocation 0 FN2648-S Chr11 26331021 Chr10 20813219 0 Translocation 0 LOC_Os10g39044 expressed protein FN2648-S Chr11 4318184 A-C 0 0 Single Base Substitution 0 HET FN2648-S Chr12 10776927 G-A 0 0 Single Base Substitution 0 HET FN2648-S Chr12 13074191 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g23120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2648-S Chr12 14102001 14165000 0 0 Deletion 62999 LOC_Os12g24640 expressed protein FN2648-S Chr12 14102001 14165000 0 0 Deletion 62999 LOC_Os12g24650 leucine aminopeptidase, chloroplast precursor, putative, expressed FN2648-S Chr12 14102001 14165000 0 0 Deletion 62999 LOC_Os12g24659 hypothetical protein FN2648-S Chr12 14102001 14165000 0 0 Deletion 62999 LOC_Os12g24670 expressed protein FN2648-S Chr12 14102001 14165000 0 0 Deletion 62999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S Chr12 14102001 14165000 0 0 Deletion 62999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2648-S Chr12 14102001 14165000 0 0 Deletion 62999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN2648-S Chr12 14137706 14137707 0 0 Deletion 1 HET FN2648-S Chr12 14456304 T-A 0 0 Single Base Substitution 0 HET FN2648-S Chr12 16335307 Chr7 3932772 0 Translocation 0 LOC_Os07g07830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2648-S Chr12 16335307 Chr7 3932772 0 Translocation 0 LOC_Os12g27700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2648-S Chr12 1774708 C-T 0 0 Single Base Substitution 0 HET FN2648-S Chr12 2504327 2504332 0 0 Deletion 5 HET FN2648-S Chr12 25183530 25183553 0 0 Deletion 23 HET FN2648-S Chr12 3582702 3582704 0 0 Insertion 2 HET FN2648-S Chr12 7148001 7168000 0 0 Deletion 19999 LOC_Os12g12910 retrotransposon protein, putative, unclassified, expressed FN2648-S Chr12 7148001 7168000 0 0 Deletion 19999 LOC_Os12g12920 hypothetical protein FN2648-S Chr12 7148001 7168000 0 0 Deletion 19999 LOC_Os12g12934 peptide transporter PTR3-A, putative, expressed FN2648-S Chr12 9427676 C-T 0 0 Single Base Substitution 0 HET FN2648-S Chr2 14689894 C-G 0 0 Single Base Substitution 0 HET FN2648-S Chr2 15275271 G-A 0 0 Single Base Substitution 0 HET FN2648-S Chr2 23214240 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g38392 NBS-LRR disease resistance protein, putative, expressed FN2648-S Chr2 25774240 G-A 0 0 Single Base Substitution 0 HET FN2648-S Chr2 26507445 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g43906 ceramide kinase-related, putative, expressed FN2648-S Chr2 26507452 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g43906 ceramide kinase-related, putative, expressed FN2648-S Chr2 27431306 27501701 0 0 Inversion 0 FN2648-S Chr2 35385679 35385681 0 0 Deletion 2 HET FN2648-S Chr2 35714688 G-C 0 0 Single Base Substitution 0 Homo FN2648-S Chr2 9139505 9139653 0 0 Deletion 148 HET FN2648-S Chr2 9448349 9448350 0 0 Deletion 1 HET FN2648-S Chr3 12233342 A-G 0 0 Single Base Substitution 0 Homo FN2648-S Chr3 12666713 12666717 0 0 Deletion 4 HET FN2648-S Chr3 22292358 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g40110 nop14-like family protein, expressed FN2648-S Chr3 32151790 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g56400 pentatricopeptide, putative, expressed FN2648-S Chr3 35663492 G-A 0 0 Single Base Substitution 0 HET FN2648-S Chr4 12800103 C-A 0 0 Single Base Substitution 0 HET FN2648-S Chr4 16244040 16244041 0 0 Deletion 1 HET FN2648-S Chr4 17221223 Chr3 25790868 0 Translocation 0 FN2648-S Chr4 2061693 2061695 0 0 Deletion 2 HET FN2648-S Chr4 2427569 C-T 0 0 Single Base Substitution 0 HET FN2648-S Chr4 24762958 G-A 0 0 Single Base Substitution 0 HET FN2648-S Chr4 25268617 25268625 0 0 Deletion 8 Homo FN2648-S Chr4 26150540 G-A 0 0 Single Base Substitution 0 Homo FN2648-S Chr4 2715364 2783946 0 0 Inversion 0 LOC_Os04g05420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S Chr4 2715417 2783955 0 0 Inversion 0 LOC_Os04g05420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S Chr4 27284930 27284931 0 0 Deletion 1 Homo FN2648-S Chr4 30427457 G-A 0 0 Single Base Substitution 0 HET FN2648-S Chr5 10335794 C-T 0 0 Single Base Substitution 0 Homo FN2648-S Chr5 10873678 10873689 0 0 Deletion 11 Homo FN2648-S Chr5 12129925 C-T 0 0 Single Base Substitution 0 HET FN2648-S Chr5 17855227 17855229 0 0 Deletion 2 Homo FN2648-S Chr5 22971043 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g39170 expressed protein FN2648-S Chr5 25108743 25108745 0 0 Deletion 2 HET FN2648-S Chr5 27200736 T-C 0 0 Single Base Substitution 0 Homo FN2648-S Chr5 28402682 C-T 0 0 Single Base Substitution 0 HET FN2648-S Chr5 28808740 C-T 0 0 Single Base Substitution 0 HET FN2648-S Chr5 29686691 A-T 0 0 Single Base Substitution 0 HET FN2648-S Chr5 5594979 C-T 0 0 Single Base Substitution 0 HET FN2648-S Chr6 16421327 C-A 0 0 Single Base Substitution 0 HET FN2648-S Chr6 17684927 17685052 0 0 Deletion 125 HET FN2648-S Chr6 20121665 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g34600 retrotransposon protein, putative, Ty3-gypsy subclass FN2648-S Chr6 5909972 T-C 0 0 Single Base Substitution 0 HET FN2648-S Chr6 6002346 T-C 0 0 Single Base Substitution 0 HET FN2648-S Chr6 8622641 8622642 0 0 Deletion 1 frameshift_variant HET LOC_Os06g15220 hypothetical protein FN2648-S Chr7 106866 106888 0 0 Insertion 22 HET FN2648-S Chr7 1082946 1082975 0 0 Deletion 29 Homo FN2648-S Chr7 20887274 20887276 0 0 Deletion 2 Homo FN2648-S Chr7 2907825 A-G 0 0 Single Base Substitution 0 Homo FN2648-S Chr7 4758388 C-T 0 0 Single Base Substitution 0 Homo FN2648-S Chr7 9541200 G-T 0 0 Single Base Substitution 0 HET FN2648-S Chr8 17094992 G-A 0 0 Single Base Substitution 0 Homo FN2648-S Chr8 19175431 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g31060 phospholipase D alpha 1, putative, expressed FN2648-S Chr8 21664001 21747000 0 0 Deletion 82999 LOC_Os08g34520 hypothetical protein FN2648-S Chr8 21664001 21747000 0 0 Deletion 82999 LOC_Os08g34530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S Chr8 21664001 21747000 0 0 Deletion 82999 LOC_Os08g34540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2648-S Chr8 21664001 21747000 0 0 Deletion 82999 LOC_Os08g34550 RING-H2 finger protein, putative, expressed FN2648-S Chr8 21664001 21747000 0 0 Deletion 82999 LOC_Os08g34560 expressed protein FN2648-S Chr8 21664001 21747000 0 0 Deletion 82999 LOC_Os08g34570 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein, expressed FN2648-S Chr8 21664001 21747000 0 0 Deletion 82999 LOC_Os08g34580 trehalose-6-phosphate synthase, putative, expressed FN2648-S Chr8 21664001 21747000 0 0 Deletion 82999 LOC_Os08g34590 transposon protein, putative, CACTA, En/Spm sub-class FN2648-S Chr8 21664001 21747000 0 0 Deletion 82999 LOC_Os08g34600 transposon protein, putative, CACTA, En/Spm sub-class FN2648-S Chr8 24110107 T-C 0 0 Single Base Substitution 0 HET FN2648-S Chr8 28324506 T-A 0 0 Single Base Substitution 0 HET FN2648-S Chr8 7184452 C-A 0 0 Single Base Substitution 0 HET FN2648-S Chr8 7676779 G-A 0 0 Single Base Substitution 0 Homo FN2648-S Chr9 14587791 15506068 0 0 Inversion 0 FN2648-S Chr9 14587791 15506068 0 0 Inversion 0 LOC_Os09g25865 expressed protein FN2648-S Chr9 14587798 15506075 0 0 Inversion 0 FN2648-S Chr9 14587798 15506075 0 0 Inversion 0 LOC_Os09g25865 expressed protein FN2648-S Chr9 21759868 21759874 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os09g37770 expressed protein FN2648-S Chr9 4753131 4753204 0 0 Deletion 73 HET