FN2649-S Chr1 13336061 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr1 176284 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr1 25500539 C-A 0 0 Single Base Substitution 0 HET FN2649-S Chr1 28566624 28566625 0 0 Deletion 1 HET FN2649-S Chr1 31822101 C-A 0 0 Single Base Substitution 0 HET FN2649-S Chr1 32310095 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr1 37317060 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr1 40882386 T-A 0 0 Single Base Substitution 0 HET FN2649-S Chr1 40882387 C-A 0 0 Single Base Substitution 0 HET FN2649-S Chr1 6677786 T-A 0 0 Single Base Substitution 0 HET FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20040 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20050 retrotransposon protein, putative, unclassified FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20060 expressed protein FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20070 transposon protein, putative, unclassified, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20080 expressed protein FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20090 CSLH1 - cellulose synthase-like family H, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20120 serine/threonine-protein kinase receptor precursor, putative, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20139 expressed protein FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20160 serine/threonine-protein kinase receptor precursor, putative, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20170 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20180 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20200 retrotransposon protein, putative, unclassified FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20210 retrotransposon protein, putative, unclassified FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20220 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20230 expressed protein FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20235 expressed protein FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20240 syntaxin 6, N-terminal domain containing protein, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20250 membrane associated DUF588 domain containing protein, putative, expressed FN2649-S Chr10 10056001 10189000 0 0 Deletion 132999 LOC_Os10g20260 CSLF7 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN2649-S Chr10 11052488 11052489 0 0 Deletion 1 Homo FN2649-S Chr10 1338387 G-T 0 0 Single Base Substitution 0 HET FN2649-S Chr10 17850953 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g33760 No apical meristem protein, putative, expressed FN2649-S Chr10 23174384 A-G 0 0 Single Base Substitution 0 HET FN2649-S Chr10 8159402 T-C 0 0 Single Base Substitution 0 HET FN2649-S Chr10 9063321 9063322 0 0 Deletion 1 frameshift_variant Homo LOC_Os10g17930 OsFBX381 - F-box domain containing protein, expressed FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19030 expressed protein FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19040 expressed protein FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19050 expressed protein FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19064 retrotransposon protein, putative, Ty1-copia subclass FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19090 retrotransposon, putative, centromere-specific FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19100 expressed protein FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19110 cytochrome P450, putative, expressed FN2649-S Chr10 9682001 9734000 0 0 Deletion 51999 LOC_Os10g19120 retrotransposon protein, putative, Ty3-gypsy subclass FN2649-S Chr11 1128861 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr11 11737981 Chr4 25397688 0 Translocation 0 LOC_Os04g42930 OsGrx_C2.2 - glutaredoxin subgroup I, expressed FN2649-S Chr11 11737981 Chr4 25397688 0 Translocation 0 LOC_Os11g20310 expressed protein FN2649-S Chr11 11749922 Chr4 25397690 0 Translocation 0 LOC_Os04g42930 OsGrx_C2.2 - glutaredoxin subgroup I, expressed FN2649-S Chr11 11749922 Chr4 25397690 0 Translocation 0 LOC_Os11g20330 expressed protein FN2649-S Chr11 1198931 1198932 0 0 Deletion 1 HET FN2649-S Chr11 1749366 T-C 0 0 Single Base Substitution 0 HET FN2649-S Chr11 20154989 T-C 0 0 Single Base Substitution 0 Homo FN2649-S Chr11 20313274 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr11 21589576 Chr7 7985005 0 Translocation 0 FN2649-S Chr11 21589576 Chr7 7985005 0 Translocation 0 LOC_Os07g13980 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed FN2649-S Chr11 2290254 2290255 0 0 Deletion 1 HET FN2649-S Chr11 25275166 25275186 0 0 Insertion 20 HET FN2649-S Chr11 3108154 C-A 0 0 Single Base Substitution 0 HET FN2649-S Chr11 3345895 T-G 0 0 Single Base Substitution 0 HET FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17410 transposon protein, putative, CACTA, En/Spm sub-class FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17420 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17430 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17440 enoyl-CoA hydratase/isomerase family protein, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17450 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17460 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17480 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17490 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17504 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17520 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17530 pentatricopeptide, putative, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17540 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17560 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17570 transposon protein, putative, unclassified FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17580 enoyl-CoA hydratase/isomerase family protein, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17600 roothairless 1, putative, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17610 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17620 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17630 conserved hypothetical protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17640 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17650 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17660 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17670 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17690 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17700 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17710 retrotransposon, putative, centromere-specific FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17720 plant protein of unknown function domain containing protein, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17730 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17770 transposon protein, putative, unclassified, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17780 retrotransposon, putative, centromere-specific, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17790 inhibitor I family protein, putative, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17799 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17810 expressed protein FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17830 transposon protein, putative, unclassified, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2649-S Chr11 9707001 9999000 0 0 Deletion 291999 LOC_Os11g17850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2649-S Chr12 10092256 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g17620 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr12 12640022 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g22380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2649-S Chr12 15659424 A-G 0 0 Single Base Substitution 0 HET FN2649-S Chr12 18744990 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr12 8977088 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr2 11384599 11384603 0 0 Deletion 4 HET FN2649-S Chr2 19486291 19486293 0 0 Insertion 2 HET FN2649-S Chr2 24817503 A-G 0 0 Single Base Substitution 0 Homo FN2649-S Chr2 25577667 A-T 0 0 Single Base Substitution 0 Homo FN2649-S Chr2 27527420 T-G 0 0 Single Base Substitution 0 HET FN2649-S Chr2 27527421 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr2 27527423 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr2 27541766 C-G 0 0 Single Base Substitution 0 HET FN2649-S Chr2 28773698 T-A 0 0 Single Base Substitution 0 HET FN2649-S Chr2 30060404 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr2 33476510 33476512 0 0 Deletion 2 HET FN2649-S Chr2 7970279 8211576 0 0 Inversion 0 FN2649-S Chr2 7970279 8211576 0 0 Inversion 0 LOC_Os02g14800 expressed protein FN2649-S Chr2 7970293 8238782 0 0 Inversion 0 FN2649-S Chr3 10402584 C-T 0 0 Single Base Substitution 0 Homo FN2649-S Chr3 15388459 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr3 22362037 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr3 27760967 C-A 0 0 Single Base Substitution 0 HET FN2649-S Chr3 28370256 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr3 31140188 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr3 31140189 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g54780 STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN2649-S Chr3 6141836 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr3 9532892 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr4 17075214 T-A 0 0 Single Base Substitution 0 HET FN2649-S Chr4 17599973 T-A 0 0 Single Base Substitution 0 Homo FN2649-S Chr4 25207369 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr4 26134270 26134287 0 0 Deletion 17 HET FN2649-S Chr4 557185 A-G 0 0 Single Base Substitution 0 HET FN2649-S Chr5 10722802 Chr4 26530140 0 Translocation 0 LOC_Os04g44810 syntaxin-18, putative, expressed FN2649-S Chr5 10722802 Chr4 26530140 0 Translocation 0 LOC_Os05g18524 expressed protein FN2649-S Chr5 1679366 C-A 0 0 Single Base Substitution 0 HET FN2649-S Chr5 20469569 T-A 0 0 Single Base Substitution 0 HET FN2649-S Chr5 22717538 G-T 0 0 Single Base Substitution 0 HET FN2649-S Chr5 27338343 27338348 0 0 Deletion 5 HET FN2649-S Chr5 29621611 C-G 0 0 Single Base Substitution 0 Homo FN2649-S Chr5 8964460 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr5 9128311 T-C 0 0 Single Base Substitution 0 HET FN2649-S Chr6 20394439 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g35040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2649-S Chr6 22481456 22481460 0 0 Deletion 4 frameshift_variant HET LOC_Os06g38030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2649-S Chr6 26606594 26606603 0 0 Deletion 9 HET FN2649-S Chr6 2690082 A-G 0 0 Single Base Substitution 0 HET FN2649-S Chr6 29874744 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr6 3758113 3758115 0 0 Insertion 2 HET FN2649-S Chr6 9801978 9801980 0 0 Insertion 2 HET FN2649-S Chr7 14967868 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr7 16393472 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr7 28933587 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr7 6061405 A-T 0 0 Single Base Substitution 0 HET FN2649-S Chr7 9440791 A-G 0 0 Single Base Substitution 0 HET FN2649-S Chr8 13007215 T-C 0 0 Single Base Substitution 0 HET FN2649-S Chr8 13591919 C-A 0 0 Single Base Substitution 0 HET FN2649-S Chr8 14086287 Chr5 5212205 0 Translocation 0 LOC_Os05g09330 transposon protein, putative, CACTA, En/Spm sub-class FN2649-S Chr8 14086287 Chr5 5212205 0 Translocation 0 LOC_Os08g23330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2649-S Chr8 20140398 20140406 0 0 Deletion 8 HET FN2649-S Chr8 2500913 C-T 0 0 Single Base Substitution 0 HET FN2649-S Chr8 3338215 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g06100 O-methyltransferase, putative, expressed FN2649-S Chr8 3338216 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g06100 O-methyltransferase, putative, expressed FN2649-S Chr9 11717057 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g19590 retrotransposon protein, putative, unclassified, expressed FN2649-S Chr9 14722990 14722991 0 0 Insertion 1 HET FN2649-S Chr9 14964326 G-A 0 0 Single Base Substitution 0 HET FN2649-S Chr9 17300471 G-C 0 0 Single Base Substitution 0 HET FN2649-S Chr9 17535915 C-A 0 0 Single Base Substitution 0 HET FN2649-S Chr9 22050975 G-C 0 0 Single Base Substitution 0 HET FN2649-S Chr9 2425367 C-T 0 0 Single Base Substitution 0 Homo