FN2651-S Chr1 10187364 C-T 0 0 Single Base Substitution 0 HET FN2651-S Chr1 17261747 G-T 0 0 Single Base Substitution 0 HET FN2651-S Chr1 17907722 17907723 0 0 Deletion 1 upstream_gene_variant HET FN2651-S Chr1 19151169 A-T 0 0 Single Base Substitution 0 HET FN2651-S Chr1 19151169 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr1 19660622 A-G 0 0 Single Base Substitution 0 HET FN2651-S Chr1 20120526 G-A 0 0 Single Base Substitution 0 HET FN2651-S Chr1 20120526 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr1 20120527 G-A 0 0 Single Base Substitution 0 HET FN2651-S Chr1 20120527 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr1 24680829 A-T 0 0 Single Base Substitution 0 HET FN2651-S Chr1 24680829 A-T 0 0 Single Base Substitution 0 INTRON HET FN2651-S Chr1 35221171 T-A 0 0 Single Base Substitution 0 HET FN2651-S Chr1 35221171 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr1 41120735 41120750 0 0 Deletion 15 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os01g71050 MSP domain containing protein, putative, expressed FN2651-S Chr1 42674678 42674682 0 0 Deletion 4 HET FN2651-S Chr1 8224361 C-T 0 0 Single Base Substitution 0 HET FN2651-S Chr10 11326745 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g21950 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2651-S Chr10 11826578 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2651-S Chr10 12127460 Chr2 16840705 0 Translocation 0 FN2651-S Chr10 12387982 Chr1 18490986 0 Translocation 0 FN2651-S Chr10 12635113 12635115 0 0 Deletion 2 intron_variant HET FN2651-S Chr10 3252995 T-A 0 0 Single Base Substitution 0 Homo FN2651-S Chr10 3252995 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2651-S Chr10 8263635 A-G 0 0 Single Base Substitution 0 HET FN2651-S Chr10 898384 898384 0 0 Insertion 1 upstream_gene_variant HET FN2651-S Chr10 9418213 T-C 0 0 Single Base Substitution 0 HET FN2651-S Chr10 9418213 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr11 10569842 Chr9 7975572 0 Translocation 0 FN2651-S Chr11 12806471 G-A 0 0 Single Base Substitution 0 HET FN2651-S Chr11 1463476 1463476 0 0 Insertion 2 INTRON HET FN2651-S Chr11 1463476 1463478 0 0 Insertion 2 HET FN2651-S Chr11 16062230 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g27910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2651-S Chr11 17616117 17616123 0 0 Deletion 6 HET FN2651-S Chr11 18860758 C-A 0 0 Single Base Substitution 0 HET FN2651-S Chr11 18860758 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr11 19832326 Chr10 10710656 0 Translocation 0 FN2651-S Chr11 26507524 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g43895 expressed protein FN2651-S Chr11 4407213 4407216 0 0 Deletion 3 HET FN2651-S Chr12 11540047 11540047 0 0 Insertion 1 downstream_gene_variant HET FN2651-S Chr12 11778994 11778995 0 0 Deletion 1 HET FN2651-S Chr12 11979507 11979661 0 0 Deletion 154 intergenic_region HET FN2651-S Chr12 12279130 T-C 0 0 Single Base Substitution 0 HET FN2651-S Chr12 12290507 12290508 0 0 Deletion 1 frameshift_variant HET LOC_Os12g21830 retrotransposon protein, putative, Ty1-copia subclass FN2651-S Chr12 16880815 16880821 0 0 Deletion 6 upstream_gene_variant HET FN2651-S Chr12 20323249 T-A 0 0 Single Base Substitution 0 HET FN2651-S Chr12 20323249 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr12 6657561 Chr8 8895240 0 Translocation 0 LOC_Os12g12140 expressed protein FN2651-S Chr2 10539599 G-T 0 0 Single Base Substitution 0 HET FN2651-S Chr2 10539599 G-T 0 0 Single Base Substitution 0 INTRON HET FN2651-S Chr2 11170923 11170924 0 0 Deletion 1 INTRON HET FN2651-S Chr2 24002827 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2651-S Chr2 33712062 T-C 0 0 Single Base Substitution 0 INTRON HET FN2651-S Chr3 27219007 27219007 0 0 Insertion 1 upstream_gene_variant HET FN2651-S Chr3 32027752 32027759 0 0 Deletion 7 HET FN2651-S Chr3 34562692 34562694 0 0 Deletion 2 upstream_gene_variant HET FN2651-S Chr3 8639445 Chr2 18422062 0 Translocation 0 FN2651-S Chr4 10100130 10100136 0 0 Deletion 6 upstream_gene_variant HET FN2651-S Chr4 11488203 11488205 0 0 Deletion 2 HET FN2651-S Chr4 11593193 11593198 0 0 Deletion 5 HET FN2651-S Chr4 12850731 12850733 0 0 Deletion 2 upstream_gene_variant HET FN2651-S Chr4 13465895 G-A 0 0 Single Base Substitution 0 HET FN2651-S Chr4 13465895 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr4 13465896 G-A 0 0 Single Base Substitution 0 HET FN2651-S Chr4 13465896 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr4 13914169 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g24290 wall-associated receptor kinase 3 precursor, putative, expressed FN2651-S Chr4 2215589 2215592 0 0 Deletion 3 downstream_gene_variant HET FN2651-S Chr4 22255526 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr4 25417763 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g42960 Lung seven transmembrane receptor domain containing protein, putative, expressed FN2651-S Chr4 25417763 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g42960 Lung seven transmembrane receptor domain containing protein, putative, expressed FN2651-S Chr4 25834734 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2651-S Chr4 26179134 A-G 0 0 Single Base Substitution 0 Homo FN2651-S Chr4 26179134 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2651-S Chr4 26803479 26803481 0 0 Deletion 2 Homo FN2651-S Chr4 26803479 26803481 0 0 Deletion 2 INTERGENIC HOMO FN2651-S Chr4 3258937 3258938 0 0 Deletion 1 HET FN2651-S Chr4 35249172 35249173 0 0 Deletion 1 upstream_gene_variant HET FN2651-S Chr4 4853057 4853143 0 0 Deletion 86 HET FN2651-S Chr4 5892595 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g10860 transposon protein, putative, unclassified, expressed FN2651-S Chr5 10262768 C-T 0 0 Single Base Substitution 0 HET FN2651-S Chr5 10837772 10837775 0 0 Insertion 3 HET FN2651-S Chr5 13233611 C-A 0 0 Single Base Substitution 0 HET FN2651-S Chr5 13233611 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr5 15021738 C-T 0 0 Single Base Substitution 0 HET FN2651-S Chr5 15021738 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr5 15826728 15826729 0 0 Deletion 1 upstream_gene_variant HET FN2651-S Chr5 28622033 C-A 0 0 Single Base Substitution 0 HET FN2651-S Chr5 28622033 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr5 9721661 T-C 0 0 Single Base Substitution 0 HET FN2651-S Chr6 13193521 13193529 0 0 Deletion 8 Homo FN2651-S Chr6 13193521 13193529 0 0 Deletion 8 INTERGENIC HOMO FN2651-S Chr6 14528271 14528272 0 0 Deletion 1 Homo FN2651-S Chr6 14528271 14528272 0 0 Deletion 1 INTRON HOMO FN2651-S Chr6 18654806 18654809 0 0 Deletion 3 upstream_gene_variant HET FN2651-S Chr6 20362120 C-T 0 0 Single Base Substitution 0 HET FN2651-S Chr6 20962950 G-T 0 0 Single Base Substitution 0 HET FN2651-S Chr6 21576308 Chr1 15444229 0 Translocation 0 LOC_Os06g36690 retrotransposon protein, putative, unclassified FN2651-S Chr6 27538653 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g45520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2651-S Chr6 2911417 A-G 0 0 Single Base Substitution 0 HET FN2651-S Chr6 2911417 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2651-S Chr7 21233868 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2651-S Chr7 23564516 23564517 0 0 Deletion 1 HET FN2651-S Chr7 3521801 Chr1 14847727 0 Translocation 0 FN2651-S Chr8 11149576 11149578 0 0 Deletion 2 upstream_gene_variant HET FN2651-S Chr8 20227075 C-T 0 0 Single Base Substitution 0 Homo FN2651-S Chr8 20227075 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2651-S Chr8 27105686 C-T 0 0 Single Base Substitution 0 Homo FN2651-S Chr8 27105686 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2651-S Chr8 2959829 2959829 0 0 Insertion 2 intergenic_region HET FN2651-S Chr8 3783955 G-T 0 0 Single Base Substitution 0 HET FN2651-S Chr8 605246 Chr7 24030575 0 Translocation 0 FN2651-S Chr8 6681321 6681321 0 0 Insertion 1 upstream_gene_variant HET FN2651-S Chr8 8605795 8605816 0 0 Deletion 21 upstream_gene_variant HET FN2651-S Chr9 10825886 G-A 0 0 Single Base Substitution 0 HET FN2651-S Chr9 16540002 Chr6 17497732 0 Translocation 0 FN2651-S Chr9 21552342 Chr2 34253049 0 Translocation 0 LOC_Os09g37310 retrotransposon protein, putative, unclassified, expressed FN2651-S Chr9 4874891 4874891 0 0 Insertion 1 upstream_gene_variant HET FN2651-S Chr9 6272157 6272158 0 0 Deletion 1 HET FN2651-S Chr9 6410989 T-C 0 0 Single Base Substitution 0 HET FN2651-S Chr9 6410989 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET