FN2654-S Chr1 11859923 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr1 13337197 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr1 14230251 A-T 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr1 17041475 T-A 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr1 17634633 17634633 0 0 Insertion 81 downstream_gene_variant HET FN2654-S Chr1 18277124 18277196 0 0 Deletion 72 intron_variant HET FN2654-S Chr1 22060509 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr1 26253062 26253068 0 0 Deletion 6 INTRON HET FN2654-S Chr1 3059980 3059982 0 0 Deletion 2 INTERGENIC HET FN2654-S Chr1 3975927 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2654-S Chr1 5671382 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2654-S Chr1 8483844 8483844 0 0 Insertion 66 upstream_gene_variant HET FN2654-S Chr10 11705248 11705252 0 0 Deletion 4 INTRON HET FN2654-S Chr10 14889519 14889522 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os10g28590 CAF1 family ribonuclease containing protein, expressed FN2654-S Chr10 16096311 T-C 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr10 16647213 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr10 17357182 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr10 19937088 19937090 0 0 Deletion 2 INTERGENIC HET FN2654-S Chr10 3176816 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr10 3869787 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2654-S Chr10 8683184 C-T 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr10 9698715 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr10 9698716 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr11 12121613 12121613 0 0 Insertion 78 intergenic_region HET FN2654-S Chr11 1617203 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2654-S Chr11 17836748 Chr10 12209849 0 Translocation 0 FN2654-S Chr11 19655329 C-G 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr11 20050670 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr11 22532682 Chr5 5767275 0 Translocation 0 LOC_Os05g10590 expressed protein FN2654-S Chr11 3971118 3971122 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os11g07790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2654-S Chr11 9311321 9311321 0 0 Insertion 2 INTERGENIC HET FN2654-S Chr12 10047192 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr12 16757674 G-A 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr12 1933607 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g04550 expressed protein FN2654-S Chr12 23853668 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr12 26802803 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr2 13273669 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr2 19844275 19844277 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os02g33400 OsFBL9 - F-box domain and LRR containing protein, expressed FN2654-S Chr2 213994 213999 0 0 Deletion 5 INTERGENIC HOMO FN2654-S Chr2 23151472 23151472 0 0 Insertion 2 upstream_gene_variant HET FN2654-S Chr2 23969407 23969407 0 0 Insertion 1 upstream_gene_variant HET FN2654-S Chr2 2576372 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g05360 expressed protein FN2654-S Chr2 33827389 33827392 0 0 Deletion 3 CODON_DELETION HET LOC_Os02g55230 carboxyl-terminal proteinase, putative, expressed FN2654-S Chr2 5326961 5326972 0 0 Deletion 11 FRAME_SHIFT HOMO LOC_Os02g10160 AGAP003371-PA, putative, expressed FN2654-S Chr2 5425094 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2654-S Chr2 6770951 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2654-S Chr3 24883120 Chr2 8852240 0 Translocation 0 FN2654-S Chr3 27245734 C-T 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr3 2766382 2766416 0 0 Deletion 34 INTERGENIC HET FN2654-S Chr3 27783836 27783842 0 0 Deletion 6 INTERGENIC HET FN2654-S Chr3 33314658 33314665 0 0 Deletion 7 UTR_3_PRIME HET FN2654-S Chr3 5617505 5617515 0 0 Deletion 10 INTRON HOMO FN2654-S Chr3 9339504 9339528 0 0 Deletion 24 INTERGENIC HOMO FN2654-S Chr4 11152782 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr4 16021497 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr4 16906017 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g28550 retrotransposon protein, putative, unclassified, expressed FN2654-S Chr4 22323938 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2654-S Chr4 35285173 35285174 0 0 Deletion 1 INTRON HOMO FN2654-S Chr4 6211041 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr4 821152 821225 0 0 Deletion 73 frameshift_variant HET LOC_Os04g02340 retrotransposon protein, putative, unclassified FN2654-S Chr4 8251075 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2654-S Chr5 14853001 14909000 0 0 Deletion 55999 LOC_Os05g25570 retrotransposon protein, putative, unclassified, expressed FN2654-S Chr5 14853001 14909000 0 0 Deletion 55999 LOC_Os05g25580 OsFBX165 - F-box domain containing protein, expressed FN2654-S Chr5 14853001 14909000 0 0 Deletion 55999 LOC_Os05g25600 transposon protein, putative, unclassified, expressed FN2654-S Chr5 14853001 14909000 0 0 Deletion 55999 LOC_Os05g25610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2654-S Chr5 14853001 14909000 0 0 Deletion 55999 LOC_Os05g25620 caltractin, putative, expressed FN2654-S Chr5 14853001 14909000 0 0 Deletion 55999 LOC_Os05g25630 inhibitor I family protein, putative, expressed FN2654-S Chr5 14853001 14909000 0 0 Deletion 55999 LOC_Os05g25640 cytochrome P450, putative, expressed FN2654-S Chr5 14853001 14909000 0 0 Deletion 55999 LOC_Os05g25650 expressed protein FN2654-S Chr5 14853001 14909000 0 0 Deletion 55999 LOC_Os05g25850 superoxide dismutase, mitochondrial precursor, putative, expressed FN2654-S Chr5 18951325 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr5 22987841 22987844 0 0 Deletion 3 INTERGENIC HET FN2654-S Chr5 23758506 23758511 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os05g40440 retrotransposon protein, putative, LINE subclass, expressed FN2654-S Chr5 2439330 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr5 24914904 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr5 27801535 T-C 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr5 29081508 29081514 0 0 Deletion 6 INTERGENIC HOMO FN2654-S Chr5 32916 Chr3 23639478 0 Translocation 0 FN2654-S Chr5 5775765 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr5 9698176 9698176 0 0 Insertion 1 upstream_gene_variant HET FN2654-S Chr6 11953211 A-G 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr6 1710560 1710561 0 0 Deletion 1 upstream_gene_variant HET FN2654-S Chr6 24873024 24873025 0 0 Deletion 1 INTERGENIC HET FN2654-S Chr6 25585467 Chr3 25151135 0 Translocation 0 LOC_Os03g44670 expressed protein FN2654-S Chr6 28383275 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr6 4745706 4745709 0 0 Deletion 3 downstream_gene_variant HET FN2654-S Chr6 5751858 5751860 0 0 Deletion 2 INTERGENIC HET FN2654-S Chr6 5752189 5752195 0 0 Deletion 6 INTERGENIC HET FN2654-S Chr6 6297141 T-C 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr6 6297149 G-A 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr7 12872595 12872596 0 0 Deletion 1 INTRON HOMO FN2654-S Chr7 1480786 1480787 0 0 Deletion 1 upstream_gene_variant HET FN2654-S Chr7 17002361 17002369 0 0 Deletion 8 INTRON HOMO FN2654-S Chr7 24240103 24240103 0 0 Insertion 94 upstream_gene_variant HET FN2654-S Chr7 24474030 24474035 0 0 Deletion 5 INTERGENIC HOMO FN2654-S Chr8 10774837 10774838 0 0 Deletion 1 INTERGENIC HET FN2654-S Chr8 11868671 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr8 15537211 15537211 0 0 Insertion 1 upstream_gene_variant HET FN2654-S Chr8 17293658 17293658 0 0 Insertion 4 upstream_gene_variant HET FN2654-S Chr8 28150708 28150710 0 0 Deletion 2 upstream_gene_variant HET FN2654-S Chr9 11396116 11396127 0 0 Deletion 11 UTR_3_PRIME HOMO FN2654-S Chr9 12188597 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr9 14471600 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2654-S Chr9 21876495 A-T 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr9 21876498 A-G 0 0 Single Base Substitution 0 INTRON HET FN2654-S Chr9 7057099 Chr1 31953042 0 Translocation 0 FN2654-S Chr9 9658128 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN2654-S Chr9 9658135 A-G 0 0 Single Base Substitution 0 INTRON HOMO