FN2657-S-1 Chr1 12075898 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr1 12129599 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2657-S-1 Chr1 20150662 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr1 24115542 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr1 24377951 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42830 adaptin ear-binding coat-associated protein 2, putative, expressed FN2657-S-1 Chr1 24891112 24891150 0 0 Deletion 38 upstream_gene_variant HET FN2657-S-1 Chr1 26513559 26513560 0 0 Deletion 1 INTERGENIC HET FN2657-S-1 Chr1 3131828 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr1 40423792 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2657-S-1 Chr1 40793911 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr1 7031170 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr1 9560623 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr1 9856877 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr10 122153 G-A 0 0 Single Base Substitution 0 INTRON HET FN2657-S-1 Chr10 15054067 15054067 0 0 Insertion 1 intron_variant HET FN2657-S-1 Chr10 22751246 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g42240 kinase, pfkB family, putative, expressed FN2657-S-1 Chr10 4453900 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr10 7028293 7028294 0 0 Deletion 1 INTRON HET FN2657-S-1 Chr10 8106863 8685880 0 0 Inversion 579017 FN2657-S-1 Chr10 8773122 8773126 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os10g17400 retrotransposon, putative, centromere-specific, expressed FN2657-S-1 Chr11 10280807 10280817 0 0 Deletion 10 INTRON HOMO FN2657-S-1 Chr11 15778951 Chr9 11329510 0 Translocation 0 FN2657-S-1 Chr11 16376707 17008514 0 0 Inversion 631807 FN2657-S-1 Chr11 17841574 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr11 22812858 22812867 0 0 Deletion 9 INTERGENIC HET FN2657-S-1 Chr11 2354353 2354354 0 0 Deletion 1 upstream_gene_variant HET FN2657-S-1 Chr11 3001998 3001999 0 0 Deletion 1 upstream_gene_variant HET FN2657-S-1 Chr12 12302108 12302122 0 0 Deletion 14 upstream_gene_variant HET FN2657-S-1 Chr12 14045077 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr12 14518922 14518922 0 0 Insertion 1 upstream_gene_variant HET FN2657-S-1 Chr12 15976550 Chr7 11781189 0 Translocation 0 FN2657-S-1 Chr12 15977128 Chr7 11780997 0 Translocation 0 FN2657-S-1 Chr12 16117761 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2657-S-1 Chr12 16184264 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2657-S-1 Chr12 20260198 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g33530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2657-S-1 Chr12 21760065 21760065 0 0 Insertion 2 downstream_gene_variant HET FN2657-S-1 Chr12 22705168 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g37050 retrotransposon protein, putative, unclassified, expressed FN2657-S-1 Chr12 4407270 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr12 7817618 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr2 11652177 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr2 19517941 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2657-S-1 Chr2 22735043 22735046 0 0 Deletion 3 INTERGENIC HOMO FN2657-S-1 Chr2 29393394 29393394 0 0 Insertion 26 upstream_gene_variant HET FN2657-S-1 Chr2 35809575 35809580 0 0 Deletion 5 INTRON HET FN2657-S-1 Chr2 35931594 C-G 0 0 Single Base Substitution 0 #VALUE! HOMO FN2657-S-1 Chr2 4752019 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr3 11237637 11237657 0 0 Deletion 20 INTERGENIC HOMO FN2657-S-1 Chr3 12881950 12881950 0 0 Insertion 2 upstream_gene_variant HET FN2657-S-1 Chr3 16652106 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr3 20569314 C-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2657-S-1 Chr3 24784694 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr3 29855228 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2657-S-1 Chr3 33628028 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g59070 phosphatase, putative, expressed FN2657-S-1 Chr3 34484716 34484721 0 0 Deletion 5 INTERGENIC HET FN2657-S-1 Chr3 36344507 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2657-S-1 Chr3 4141568 4141569 0 0 Deletion 1 INTRON HOMO FN2657-S-1 Chr3 6581337 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g12460 conserved oligomeric complex COG6 family protein, expressed FN2657-S-1 Chr3 6879711 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr3 9517651 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2657-S-1 Chr4 12044000 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr4 13091793 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2657-S-1 Chr4 14201602 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2657-S-1 Chr4 17698948 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr4 19462099 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr4 22697891 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr4 31250853 31250855 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os04g52560 transposon protein, putative, unclassified, expressed FN2657-S-1 Chr4 33507551 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr5 17833199 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr5 5139023 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr6 14072701 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr6 22424098 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr6 26584863 26584883 0 0 Deletion 20 INTERGENIC HOMO FN2657-S-1 Chr6 30713687 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr6 30713688 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr6 30713689 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr6 6824316 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g12590 protein kinase, putative, expressed FN2657-S-1 Chr6 6824319 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g12590 protein kinase, putative, expressed FN2657-S-1 Chr6 7316597 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr6 7316598 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr6 7316599 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr6 7429697 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr7 11781006 Chr1 20049378 0 Translocation 0 FN2657-S-1 Chr7 18561182 18561183 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os07g31340 regulator of nonsense transcripts 1, putative, expressed FN2657-S-1 Chr7 26757310 26757311 0 0 Deletion 1 5_prime_UTR_variant HET FN2657-S-1 Chr7 27547363 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN2657-S-1 Chr7 28438001 28445000 0 0 Deletion 6999 LOC_Os07g47560 expressed protein FN2657-S-1 Chr7 28438001 28445000 0 0 Deletion 6999 LOC_Os07g47910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2657-S-1 Chr7 4283338 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr7 5554353 T-C 0 0 Single Base Substitution 0 INTRON HET FN2657-S-1 Chr8 11049434 11049434 0 0 Insertion 1 upstream_gene_variant HET FN2657-S-1 Chr8 15471670 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr8 16929054 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2657-S-1 Chr8 1806451 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr8 26303279 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr8 27970626 27970628 0 0 Deletion 2 5_prime_UTR_variant HET FN2657-S-1 Chr8 5057293 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr9 12265040 T-A 0 0 Single Base Substitution 0 INTRON HET FN2657-S-1 Chr9 13507587 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g22350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2657-S-1 Chr9 13551576 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr9 14494966 14494967 0 0 Deletion 1 upstream_gene_variant HET FN2657-S-1 Chr9 17580736 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2657-S-1 Chr9 5223658 5223659 0 0 Deletion 1 upstream_gene_variant HET FN2657-S-1 Chr9 8501638 8501640 0 0 Deletion 2 upstream_gene_variant HET