FN2658-S Chr1 10604210 T-C 0 0 Single Base Substitution 0 Homo FN2658-S Chr1 10604406 10604414 0 0 Deletion 8 Homo FN2658-S Chr1 12571703 A-G 0 0 Single Base Substitution 0 HET FN2658-S Chr1 13246001 13262000 0 0 Deletion 15999 LOC_Os01g23580 inorganic H+ pyrophosphatase, putative, expressed FN2658-S Chr1 13246001 13262000 0 0 Deletion 15999 LOC_Os01g23590 suppressor of Mek, putative, expressed FN2658-S Chr1 15968097 T-A 0 0 Single Base Substitution 0 Homo FN2658-S Chr1 21476490 A-T 0 0 Single Base Substitution 0 HET FN2658-S Chr1 28645403 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g49870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2658-S Chr10 20447277 20447301 0 0 Insertion 24 HET FN2658-S Chr10 20971001 20998000 0 0 Deletion 26999 LOC_Os10g39300 aspartic proteinase nepenthesin, putative, expressed FN2658-S Chr10 20971001 20998000 0 0 Deletion 26999 LOC_Os10g39310 aspartic proteinase nepenthesin precursor, putative, expressed FN2658-S Chr10 20971001 20998000 0 0 Deletion 26999 LOC_Os10g39320 aspartic proteinase nepenthesin precursor, putative, expressed FN2658-S Chr10 20971001 20998000 0 0 Deletion 26999 LOC_Os10g39330 Eukaryotic aspartyl protease domain containing protein, expressed FN2658-S Chr10 20971001 20998000 0 0 Deletion 26999 LOC_Os10g39340 aspartic proteinase nepenthesin precursor, putative, expressed FN2658-S Chr10 20971001 20998000 0 0 Deletion 26999 LOC_Os10g39350 aspartic proteinase nepenthesin, putative, expressed FN2658-S Chr10 22086847 22086851 0 0 Deletion 4 frameshift_variant HET LOC_Os10g41120 expressed protein FN2658-S Chr10 23012800 G-T 0 0 Single Base Substitution 0 HET FN2658-S Chr10 23185776 C-T 0 0 Single Base Substitution 0 HET FN2658-S Chr10 4720042 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2658-S Chr11 10522657 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g18640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2658-S Chr11 12805330 12805332 0 0 Deletion 2 frameshift_variant HET LOC_Os11g22336 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2658-S Chr11 14480752 G-A 0 0 Single Base Substitution 0 HET FN2658-S Chr11 16417094 G-T 0 0 Single Base Substitution 0 HET FN2658-S Chr11 23325086 G-A 0 0 Single Base Substitution 0 HET FN2658-S Chr11 24660491 G-A 0 0 Single Base Substitution 0 HET FN2658-S Chr11 8297218 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g14710 expressed protein FN2658-S Chr12 10225740 T-G 0 0 Single Base Substitution 0 HET FN2658-S Chr12 1126153 1126156 0 0 Deletion 3 HET FN2658-S Chr12 1632927 1632933 0 0 Insertion 6 HET FN2658-S Chr12 19263661 19263673 0 0 Deletion 12 HET FN2658-S Chr12 228150 228152 0 0 Insertion 2 HET FN2658-S Chr12 23312383 C-T 0 0 Single Base Substitution 0 HET FN2658-S Chr12 24136237 A-G 0 0 Single Base Substitution 0 HET FN2658-S Chr12 3932656 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g07780 eukaryotic aspartyl protease domain containing protein, expressed FN2658-S Chr2 11385050 C-T 0 0 Single Base Substitution 0 Homo FN2658-S Chr2 26024474 A-T 0 0 Single Base Substitution 0 Homo FN2658-S Chr3 1838424 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g04030 HVA22, putative, expressed FN2658-S Chr3 18897930 18897932 0 0 Deletion 2 HET FN2658-S Chr3 24207935 G-A 0 0 Single Base Substitution 0 HET FN2658-S Chr3 31392958 G-T 0 0 Single Base Substitution 0 HET FN2658-S Chr3 34983321 34983323 0 0 Deletion 2 HET FN2658-S Chr3 35945318 G-T 0 0 Single Base Substitution 0 HET FN2658-S Chr4 13745766 13745772 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os04g24060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2658-S Chr4 14216517 T-A 0 0 Single Base Substitution 0 Homo FN2658-S Chr4 15325223 C-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os04g26290 retrotransposon protein, putative, unclassified, expressed FN2658-S Chr4 17552001 17587000 0 0 Deletion 34999 LOC_Os04g29540 retrotransposon protein, putative, unclassified, expressed FN2658-S Chr4 17552001 17587000 0 0 Deletion 34999 LOC_Os04g29550 RIPER2 - Ripening-related family protein precursor, expressed FN2658-S Chr4 17552001 17587000 0 0 Deletion 34999 LOC_Os04g29560 hypothetical protein FN2658-S Chr4 17552001 17587000 0 0 Deletion 34999 LOC_Os04g29580 OsWAK37 - OsWAK short gene, expressed FN2658-S Chr4 17552436 17644272 0 0 Inversion 0 FN2658-S Chr4 17586683 17644273 0 0 Inversion 0 LOC_Os04g29580 OsWAK37 - OsWAK short gene, expressed FN2658-S Chr4 19045630 C-T 0 0 Single Base Substitution 0 Homo FN2658-S Chr4 21745322 T-A 0 0 Single Base Substitution 0 HET FN2658-S Chr4 25251352 C-T 0 0 Single Base Substitution 0 Homo FN2658-S Chr4 30285421 G-A 0 0 Single Base Substitution 0 Homo FN2658-S Chr4 30464174 30464189 0 0 Deletion 15 stop_gained&disruptive_inframe_deletion Homo LOC_Os04g51440 villin protein, putative, expressed FN2658-S Chr4 8765173 A-G 0 0 Single Base Substitution 0 Homo FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20910 expressed protein FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20914 expressed protein FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20920 retrotransposon, putative, centromere-specific, expressed FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20930 ZOS5-07 - C2H2 zinc finger protein, expressed FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20940 retrotransposon protein, putative, Ty3-gypsy subclass FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20950 retrotransposon protein, putative, unclassified, expressed FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20954 retrotransposon protein, putative, unclassified, expressed FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20960 retrotransposon protein, putative, Ty3-gypsy subclass FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20980 transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24, expressed FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g20990 retrotransposon protein, putative, Ty3-gypsy subclass FN2658-S Chr5 12279001 12360000 0 0 Deletion 80999 LOC_Os05g21000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2658-S Chr5 12369001 12380000 0 0 Deletion 10999 LOC_Os05g21020 retrotransposon protein, putative, unclassified, expressed FN2658-S Chr5 12369001 12380000 0 0 Deletion 10999 LOC_Os05g21030 retrotransposon protein, putative, unclassified FN2658-S Chr5 12369001 12380000 0 0 Deletion 10999 LOC_Os05g21040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2658-S Chr5 12802298 G-A 0 0 Single Base Substitution 0 HET FN2658-S Chr5 14444785 G-A 0 0 Single Base Substitution 0 Homo FN2658-S Chr5 18217872 T-C 0 0 Single Base Substitution 0 Homo FN2658-S Chr5 19556011 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g33340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2658-S Chr5 20369899 T-A 0 0 Single Base Substitution 0 HET FN2658-S Chr5 25749517 C-T 0 0 Single Base Substitution 0 HET FN2658-S Chr5 29007594 29007603 0 0 Deletion 9 HET FN2658-S Chr5 29369399 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g51200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2658-S Chr5 7118297 T-C 0 0 Single Base Substitution 0 HET FN2658-S Chr6 14606073 14606090 0 0 Deletion 17 Homo FN2658-S Chr6 20211010 G-A 0 0 Single Base Substitution 0 Homo FN2658-S Chr6 20222556 G-A 0 0 Single Base Substitution 0 HET FN2658-S Chr6 25864775 G-A 0 0 Single Base Substitution 0 HET FN2658-S Chr6 5394300 5394317 0 0 Deletion 17 Homo FN2658-S Chr6 5731403 5731419 0 0 Deletion 16 Homo FN2658-S Chr7 15733876 C-T 0 0 Single Base Substitution 0 Homo FN2658-S Chr7 66470 T-A 0 0 Single Base Substitution 0 HET FN2658-S Chr8 14976451 14976457 0 0 Deletion 6 inframe_deletion HET LOC_Os08g24750 xyloglucan fucosyltransferase, putative, expressed FN2658-S Chr8 17299048 17299138 0 0 Deletion 90 HET FN2658-S Chr8 17931019 C-T 0 0 Single Base Substitution 0 HET FN2658-S Chr8 180658 C-T 0 0 Single Base Substitution 0 HET FN2658-S Chr8 21219681 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g33910 no apical meristem protein, putative, expressed FN2658-S Chr8 23025642 G-A 0 0 Single Base Substitution 0 Homo FN2658-S Chr8 27565430 Chr4 10877213 0 Translocation 0 FN2658-S Chr8 27565430 Chr4 10877213 0 Translocation 0 LOC_Os04g19540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2658-S Chr8 27565450 Chr4 10875680 0 Translocation 0 FN2658-S Chr8 27565450 Chr4 10875680 0 Translocation 0 LOC_Os04g19540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2658-S Chr8 4987631 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g08630 expressed protein FN2658-S Chr8 5927471 G-A 0 0 Single Base Substitution 0 HET FN2658-S Chr9 10750969 Chr4 34819821 0 Translocation 0 FN2658-S Chr9 10750969 Chr4 34819821 0 Translocation 0 LOC_Os04g58560 cysteine protease ATG4, putative, expressed FN2658-S Chr9 16231304 16231305 0 0 Deletion 1 Homo FN2658-S Chr9 18081127 18081132 0 0 Deletion 5 frameshift_variant HET LOC_Os09g29730 transposon protein, putative, CACTA, En/Spm sub-class FN2658-S Chr9 1889397 1889398 0 0 Deletion 1 HET FN2658-S Chr9 4155116 C-T 0 0 Single Base Substitution 0 Homo FN2658-S Chr9 5191377 C-A 0 0 Single Base Substitution 0 HET FN2658-S Chr9 8587553 T-C 0 0 Single Base Substitution 0 HET