FN2661-S-1 Chr1 13545895 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g24040 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2661-S-1 Chr1 14574548 14574550 0 0 Deletion 2 frameshift_variant HET LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2661-S-1 Chr1 29310460 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g51010 DUF292 domain containing protein, expressed FN2661-S-1 Chr1 31019728 31019728 0 0 Insertion 1 upstream_gene_variant HET FN2661-S-1 Chr1 36116743 36116744 0 0 Deletion 1 upstream_gene_variant HET FN2661-S-1 Chr1 37183017 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN2661-S-1 Chr1 871582 871582 0 0 Insertion 10 downstream_gene_variant HET FN2661-S-1 Chr1 9622014 9622021 0 0 Deletion 7 FRAME_SHIFT HET LOC_Os01g16850 retrotransposon protein, putative, unclassified, expressed FN2661-S-1 Chr10 13679096 C-A 0 0 Single Base Substitution 0 INTRON HET FN2661-S-1 Chr10 15537597 15537597 0 0 Insertion 1 downstream_gene_variant HET FN2661-S-1 Chr10 2239293 2239293 0 0 Insertion 48 upstream_gene_variant HET FN2661-S-1 Chr10 22854623 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr10 4202020 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr10 5144804 5144804 0 0 Insertion 2 intron_variant HET FN2661-S-1 Chr10 7652730 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr10 7671058 7671061 0 0 Deletion 3 upstream_gene_variant HET FN2661-S-1 Chr10 9435241 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr11 10234392 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr11 13327713 13327713 0 0 Insertion 1 downstream_gene_variant HET FN2661-S-1 Chr11 13791019 13791036 0 0 Deletion 17 upstream_gene_variant HET FN2661-S-1 Chr11 16402640 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr11 17500043 17500046 0 0 Deletion 3 upstream_gene_variant HET FN2661-S-1 Chr11 20168091 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr11 22159796 Chr8 10137906 0 Translocation 0 LOC_Os11g37540 protein phosphatase 2C, putative, expressed FN2661-S-1 Chr11 22532797 Chr5 5767258 0 Translocation 0 LOC_Os05g10590 expressed protein FN2661-S-1 Chr11 23002125 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2661-S-1 Chr11 24686500 24686502 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os11g41180 expressed protein FN2661-S-1 Chr11 24740711 24740737 0 0 Deletion 26 FRAME_SHIFT HOMO LOC_Os11g41270 retrotransposon protein, putative, unclassified, expressed FN2661-S-1 Chr11 27688464 Chr5 23584250 0 Translocation 0 LOC_Os05g40150 RGH2B, putative, expressed FN2661-S-1 Chr11 27757035 Chr4 3131208 0 Translocation 0 FN2661-S-1 Chr11 3058725 3058725 0 0 Insertion 1 upstream_gene_variant HET FN2661-S-1 Chr11 3618149 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2661-S-1 Chr11 8635998 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr11 8783850 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr11 8893815 8893863 0 0 Deletion 48 disruptive_inframe_deletion HET LOC_Os11g15690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2661-S-1 Chr12 10482998 Chr7 29118623 0 Translocation 0 LOC_Os07g48630 ethylene-insensitive 3, putative, expressed FN2661-S-1 Chr12 1063917 1063937 0 0 Deletion 20 FRAME_SHIFT HOMO LOC_Os12g02900 retrotransposon protein, putative, unclassified, expressed FN2661-S-1 Chr12 10729497 10729497 0 0 Insertion 31 upstream_gene_variant HET FN2661-S-1 Chr12 11519557 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr12 1201890 A-C 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN2661-S-1 Chr12 13373658 Chr4 12545953 0 Translocation 0 LOC_Os04g22130 conserved hypothetical protein FN2661-S-1 Chr12 18215775 18215775 0 0 Insertion 2 intron_variant HET FN2661-S-1 Chr12 19105199 Chr3 14531802 0 Translocation 0 FN2661-S-1 Chr12 20502586 Chr8 1952438 0 Translocation 0 FN2661-S-1 Chr12 2109751 Chr9 9468878 0 Translocation 0 LOC_Os12g04910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2661-S-1 Chr12 23787979 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr12 23803678 Chr3 22077710 0 Translocation 0 FN2661-S-1 Chr12 25734842 25734843 0 0 Deletion 1 upstream_gene_variant HET FN2661-S-1 Chr12 27039704 Chr2 7526584 0 Translocation 0 FN2661-S-1 Chr12 2978714 2978722 0 0 Deletion 8 INTERGENIC HET FN2661-S-1 Chr12 3540968 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2661-S-1 Chr12 7473769 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2661-S-1 Chr12 8221232 Chr4 3485782 0 Translocation 0 LOC_Os12g14420 retrotransposon protein, putative, Ty3-gypsy subclass FN2661-S-1 Chr2 12916297 12916303 0 0 Deletion 6 upstream_gene_variant HET FN2661-S-1 Chr2 16495023 16495023 0 0 Insertion 1 upstream_gene_variant HET FN2661-S-1 Chr2 20207445 20207445 0 0 Insertion 1 upstream_gene_variant HET FN2661-S-1 Chr2 23475478 23475478 0 0 Insertion 1 upstream_gene_variant HET FN2661-S-1 Chr2 34738868 34738868 0 0 Insertion 16 upstream_gene_variant HET FN2661-S-1 Chr2 4601499 4601506 0 0 Deletion 7 INTERGENIC HOMO FN2661-S-1 Chr3 15524152 15524154 0 0 Deletion 2 INTERGENIC HET FN2661-S-1 Chr3 18947478 18947481 0 0 Deletion 3 upstream_gene_variant HET FN2661-S-1 Chr3 22759606 22759606 0 0 Insertion 12 downstream_gene_variant HET FN2661-S-1 Chr3 29523171 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr3 33285713 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr3 3595001 3641000 0 0 Deletion 45999 LOC_Os03g07060 glycerol-3-phosphate acyltransferase, putative, expressed FN2661-S-1 Chr3 3595001 3641000 0 0 Deletion 45999 LOC_Os03g07070 expressed protein FN2661-S-1 Chr3 3595001 3641000 0 0 Deletion 45999 LOC_Os03g07080 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN2661-S-1 Chr3 3595001 3641000 0 0 Deletion 45999 LOC_Os03g07090 expressed protein FN2661-S-1 Chr3 3595001 3641000 0 0 Deletion 45999 LOC_Os03g07100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2661-S-1 Chr3 3595001 3641000 0 0 Deletion 45999 LOC_Os03g07110 calmodulin-binding protein, putative, expressed FN2661-S-1 Chr3 3595001 3641000 0 0 Deletion 45999 LOC_Os03g07120 expressed protein FN2661-S-1 Chr3 3595001 3641000 0 0 Deletion 45999 LOC_Os03g07310 growth regulator related protein, putative, expressed FN2661-S-1 Chr4 11974491 11974491 0 0 Insertion 1 upstream_gene_variant HET FN2661-S-1 Chr4 1226852 1226858 0 0 Deletion 6 INTRON HET FN2661-S-1 Chr4 13171073 Chr1 8783373 0 Translocation 0 FN2661-S-1 Chr4 17622261 17622261 0 0 Insertion 48 downstream_gene_variant HET FN2661-S-1 Chr4 17637119 C-T 0 0 Single Base Substitution 0 INTRON HET FN2661-S-1 Chr4 18132441 18132442 0 0 Deletion 1 upstream_gene_variant HET FN2661-S-1 Chr4 1836432 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2661-S-1 Chr4 26106170 Chr1 10836412 0 Translocation 0 FN2661-S-1 Chr4 26395625 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2661-S-1 Chr4 27007922 Chr2 28383914 0 Translocation 0 FN2661-S-1 Chr4 32240786 32939701 0 0 Inversion 698915 FN2661-S-1 Chr4 32240797 32939713 0 0 Inversion 698916 FN2661-S-1 Chr4 8749036 8749036 0 0 Insertion 1 upstream_gene_variant HET FN2661-S-1 Chr4 9283415 9283416 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os04g16950 retrotransposon protein, putative, unclassified, expressed FN2661-S-1 Chr4 9997072 9997072 0 0 Insertion 40 downstream_gene_variant HET FN2661-S-1 Chr5 13812545 13812580 0 0 Deletion 35 upstream_gene_variant HET FN2661-S-1 Chr5 17562409 17562439 0 0 Deletion 30 upstream_gene_variant HET FN2661-S-1 Chr5 19075320 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g32580 glycine-rich protein, putative, expressed FN2661-S-1 Chr5 26695763 A-G 0 0 Single Base Substitution 0 INTRON HET FN2661-S-1 Chr5 29886601 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2661-S-1 Chr5 29932065 29932065 0 0 Insertion 1 intergenic_region HET FN2661-S-1 Chr5 6278539 6462357 0 0 Inversion 183818 FN2661-S-1 Chr5 6278560 6462360 0 0 Inversion 183800 FN2661-S-1 Chr5 7724375 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr5 9941426 9941426 0 0 Insertion 1 upstream_gene_variant HET FN2661-S-1 Chr5 9951669 9951671 0 0 Deletion 2 downstream_gene_variant HET FN2661-S-1 Chr6 13713679 Chr2 2393042 0 Translocation 0 FN2661-S-1 Chr6 16753820 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2661-S-1 Chr6 18279856 Chr4 8850351 0 Translocation 0 FN2661-S-1 Chr6 19903339 19903339 0 0 Insertion 10 downstream_gene_variant HET FN2661-S-1 Chr6 20927480 20927484 0 0 Deletion 4 INTERGENIC HOMO FN2661-S-1 Chr6 21385147 21385147 0 0 Insertion 1 downstream_gene_variant HET FN2661-S-1 Chr6 28538073 Chr3 15949972 0 Translocation 0 FN2661-S-1 Chr6 8926385 8926386 0 0 Deletion 1 intron_variant HET FN2661-S-1 Chr7 14156455 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr7 17315477 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr7 23277372 Chr3 13642981 0 Translocation 0 FN2661-S-1 Chr7 7882486 7882486 0 0 Insertion 1 downstream_gene_variant HET FN2661-S-1 Chr7 8275735 8275736 0 0 Deletion 1 upstream_gene_variant HET FN2661-S-1 Chr8 12514536 12514537 0 0 Deletion 1 upstream_gene_variant HET FN2661-S-1 Chr8 14577417 Chr6 8968045 0 Translocation 0 FN2661-S-1 Chr8 15765978 Chr3 15248058 0 Translocation 0 LOC_Os03g26704 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2661-S-1 Chr8 18074315 Chr1 18737653 0 Translocation 0 LOC_Os01g34040 retrotransposon protein, putative, unclassified, expressed FN2661-S-1 Chr8 18802709 G-T 0 0 Single Base Substitution 0 INTRON HET FN2661-S-1 Chr8 20135723 Chr1 2999832 0 Translocation 0 FN2661-S-1 Chr8 2052119 2052120 0 0 Deletion 1 downstream_gene_variant HET FN2661-S-1 Chr8 22576556 22576557 0 0 Deletion 1 upstream_gene_variant HET FN2661-S-1 Chr8 24855057 24855071 0 0 Deletion 14 FRAME_SHIFT HET LOC_Os08g39330 skin secretory protein xP2 precursor, putative, expressed FN2661-S-1 Chr8 25236241 25236242 0 0 Deletion 1 INTERGENIC HET FN2661-S-1 Chr8 26016603 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr8 26105604 26105605 0 0 Deletion 1 downstream_gene_variant HET FN2661-S-1 Chr8 2705801 2705804 0 0 Deletion 3 inframe_deletion HET LOC_Os08g05180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2661-S-1 Chr8 8049933 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g13540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2661-S-1 Chr8 8505944 Chr3 2897018 0 Translocation 0 FN2661-S-1 Chr9 13792878 13792880 0 0 Deletion 2 downstream_gene_variant HET FN2661-S-1 Chr9 18589761 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr9 18589762 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr9 3493491 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2661-S-1 Chr9 575583 575585 0 0 Deletion 2 upstream_gene_variant HET FN2661-S-1 Chr9 6382652 Chr7 6237696 0 Translocation 0 FN2661-S-1 Chr9 7340127 7340127 0 0 Insertion 3 inframe_insertion HET LOC_Os09g12790 potassium channel protein, putative, expressed FN2661-S-1 Chr9 8061542 8061543 0 0 Deletion 1 downstream_gene_variant HET