FN2661-S Chr1 13545895 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g24040 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2661-S Chr1 19047915 A-G 0 0 Single Base Substitution 0 HET FN2661-S Chr1 37183017 G-T 0 0 Single Base Substitution 0 Homo FN2661-S Chr1 6349261 C-T 0 0 Single Base Substitution 0 HET FN2661-S Chr1 9622014 9622021 0 0 Deletion 7 frameshift_variant HET LOC_Os01g16850 retrotransposon protein, putative, unclassified, expressed FN2661-S Chr10 13679096 C-A 0 0 Single Base Substitution 0 HET FN2661-S Chr10 22854623 C-A 0 0 Single Base Substitution 0 HET FN2661-S Chr10 7652730 G-A 0 0 Single Base Substitution 0 HET FN2661-S Chr10 9435241 A-T 0 0 Single Base Substitution 0 HET FN2661-S Chr11 17960685 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g30850 retrotransposon protein, putative, Ty3-gypsy subclass FN2661-S Chr11 23002125 T-A 0 0 Single Base Substitution 0 Homo FN2661-S Chr11 24686495 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g41180 expressed protein FN2661-S Chr11 24686496 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g41180 expressed protein FN2661-S Chr11 24686508 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g41180 expressed protein FN2661-S Chr11 24740711 24740737 0 0 Deletion 26 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant Homo LOC_Os11g41270 retrotransposon protein, putative, unclassified, expressed FN2661-S Chr11 3618149 T-A 0 0 Single Base Substitution 0 Homo FN2661-S Chr11 8635998 G-A 0 0 Single Base Substitution 0 HET FN2661-S Chr11 8783850 A-C 0 0 Single Base Substitution 0 HET FN2661-S Chr12 1063917 1063937 0 0 Deletion 20 frameshift_variant Homo LOC_Os12g02900 retrotransposon protein, putative, unclassified, expressed FN2661-S Chr12 1201890 A-C 0 0 Single Base Substitution 0 Homo FN2661-S Chr12 3540968 T-C 0 0 Single Base Substitution 0 Homo FN2661-S Chr12 7473769 G-A 0 0 Single Base Substitution 0 Homo FN2661-S Chr2 15373081 G-A 0 0 Single Base Substitution 0 HET FN2661-S Chr2 4601499 4601506 0 0 Deletion 7 Homo FN2661-S Chr3 15524152 15524154 0 0 Deletion 2 HET FN2661-S Chr3 29523171 G-A 0 0 Single Base Substitution 0 HET FN2661-S Chr3 33285713 T-G 0 0 Single Base Substitution 0 HET FN2661-S Chr3 3595001 3642000 0 0 Deletion 46999 LOC_Os03g07050 retrotransposon protein, putative, unclassified, expressed FN2661-S Chr3 3595001 3642000 0 0 Deletion 46999 LOC_Os03g07060 glycerol-3-phosphate acyltransferase, putative, expressed FN2661-S Chr3 3595001 3642000 0 0 Deletion 46999 LOC_Os03g07070 expressed protein FN2661-S Chr3 3595001 3642000 0 0 Deletion 46999 LOC_Os03g07080 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN2661-S Chr3 3595001 3642000 0 0 Deletion 46999 LOC_Os03g07090 expressed protein FN2661-S Chr3 3595001 3642000 0 0 Deletion 46999 LOC_Os03g07100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2661-S Chr3 3595001 3642000 0 0 Deletion 46999 LOC_Os03g07110 calmodulin-binding protein, putative, expressed FN2661-S Chr3 3595001 3642000 0 0 Deletion 46999 LOC_Os03g07120 expressed protein FN2661-S Chr4 1226852 1226858 0 0 Deletion 6 HET FN2661-S Chr4 17637119 C-T 0 0 Single Base Substitution 0 HET FN2661-S Chr4 1836432 T-C 0 0 Single Base Substitution 0 Homo FN2661-S Chr4 20656550 G-A 0 0 Single Base Substitution 0 HET FN2661-S Chr4 26395625 T-A 0 0 Single Base Substitution 0 Homo FN2661-S Chr4 32240786 32939701 0 0 Inversion 0 LOC_Os04g54110 ARK3, putative, expressed FN2661-S Chr4 32240797 32939713 0 0 Inversion 0 LOC_Os04g54110 ARK3, putative, expressed FN2661-S Chr4 35486289 35486290 0 0 Insertion 1 HET FN2661-S Chr4 9283415 9283416 0 0 Deletion 1 frameshift_variant Homo LOC_Os04g16950 retrotransposon protein, putative, unclassified, expressed FN2661-S Chr5 19075320 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g32580 glycine-rich protein, putative, expressed FN2661-S Chr5 24960088 T-C 0 0 Single Base Substitution 0 HET FN2661-S Chr5 26695763 A-G 0 0 Single Base Substitution 0 HET FN2661-S Chr5 6278539 6462357 0 0 Inversion 0 LOC_Os05g11140 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed FN2661-S Chr5 6278560 6462360 0 0 Inversion 0 LOC_Os05g11140 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed FN2661-S Chr6 11065532 T-C 0 0 Single Base Substitution 0 HET FN2661-S Chr6 16753820 A-G 0 0 Single Base Substitution 0 Homo FN2661-S Chr6 20927480 20927484 0 0 Deletion 4 Homo FN2661-S Chr6 6479071 A-T 0 0 Single Base Substitution 0 HET FN2661-S Chr6 6479072 C-T 0 0 Single Base Substitution 0 HET FN2661-S Chr6 9365551 C-T 0 0 Single Base Substitution 0 HET FN2661-S Chr7 1250835 G-A 0 0 Single Base Substitution 0 HET FN2661-S Chr7 17315477 G-A 0 0 Single Base Substitution 0 HET FN2661-S Chr8 24855057 24855071 0 0 Deletion 14 frameshift_variant Homo LOC_Os08g39330 skin secretory protein xP2 precursor, putative, expressed FN2661-S Chr8 25236241 25236242 0 0 Deletion 1 HET FN2661-S Chr8 26016603 C-T 0 0 Single Base Substitution 0 HET FN2661-S Chr8 3266468 C-T 0 0 Single Base Substitution 0 HET FN2661-S Chr9 18589761 G-T 0 0 Single Base Substitution 0 HET FN2661-S Chr9 18589762 C-T 0 0 Single Base Substitution 0 HET FN2661-S Chr9 19095800 19095820 0 0 Insertion 20 HET FN2661-S Chr9 22151099 G-A 0 0 Single Base Substitution 0 HET FN2661-S Chr9 3493491 A-T 0 0 Single Base Substitution 0 HET