FN2663-S-1 Chr1 14433004 14433010 0 0 Deletion 6 INTERGENIC HOMO FN2663-S-1 Chr1 20899033 20899061 0 0 Deletion 28 upstream_gene_variant HET FN2663-S-1 Chr1 22222800 22222811 0 0 Deletion 11 upstream_gene_variant HET FN2663-S-1 Chr1 28124056 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr1 28306762 28306762 0 0 Insertion 1 upstream_gene_variant HET FN2663-S-1 Chr1 40089933 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr10 16256491 16256495 0 0 Deletion 4 INTERGENIC HET FN2663-S-1 Chr10 16297997 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g31130 transposon protein, putative, Pong sub-class, expressed FN2663-S-1 Chr10 5961525 5961551 0 0 Deletion 26 upstream_gene_variant HET FN2663-S-1 Chr10 6269739 6269739 0 0 Insertion 8 downstream_gene_variant HET FN2663-S-1 Chr10 7793656 7793657 0 0 Deletion 1 upstream_gene_variant HET FN2663-S-1 Chr10 7899135 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2663-S-1 Chr10 7899136 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g15079 retrotransposon protein, putative, unclassified, expressed FN2663-S-1 Chr10 7911535 7911535 0 0 Insertion 1 upstream_gene_variant HET FN2663-S-1 Chr11 11136043 11136049 0 0 Deletion 6 INTERGENIC HOMO FN2663-S-1 Chr11 17989032 17989032 0 0 Insertion 3 upstream_gene_variant HET FN2663-S-1 Chr11 18336032 Chr1 9105360 0 Translocation 0 FN2663-S-1 Chr11 21009832 A-C 0 0 Single Base Substitution 0 INTRON HET FN2663-S-1 Chr11 21548515 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr11 21700850 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr11 21700854 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr11 22758949 22759643 0 0 Inversion 694 FN2663-S-1 Chr11 22758954 22803939 0 0 Inversion 44985 FN2663-S-1 Chr11 22759001 22774000 0 0 Deletion 14999 LOC_Os11g38440 expressed protein FN2663-S-1 Chr11 22759001 22774000 0 0 Deletion 14999 LOC_Os11g38450 expressed protein FN2663-S-1 Chr11 22759001 22774000 0 0 Deletion 14999 LOC_Os12g01210 HCF152, putative, expressed FN2663-S-1 Chr11 27850864 Chr1 3225365 0 Translocation 0 LOC_Os01g06790 disease resistance protein, putative, expressed FN2663-S-1 Chr11 27850864 Chr1 3225365 0 Translocation 0 LOC_Os11g46010 retrotransposon protein, putative, unclassified, expressed FN2663-S-1 Chr11 3435329 Chr10 467566 0 Translocation 0 FN2663-S-1 Chr11 3679914 3679915 0 0 Deletion 1 downstream_gene_variant HET FN2663-S-1 Chr12 12046496 12046497 0 0 Deletion 1 intergenic_region HET FN2663-S-1 Chr12 14298373 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2663-S-1 Chr12 15273673 15273674 0 0 Deletion 1 downstream_gene_variant HET FN2663-S-1 Chr12 15590496 15590511 0 0 Deletion 15 INTRON HOMO FN2663-S-1 Chr12 21554003 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2663-S-1 Chr12 24603768 24603769 0 0 Deletion 1 upstream_gene_variant HET FN2663-S-1 Chr12 27207326 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2663-S-1 Chr12 8690373 8690373 0 0 Insertion 1 splice_region_variant&intron_variant HET FN2663-S-1 Chr2 11801579 11801579 0 0 Insertion 4 upstream_gene_variant HET FN2663-S-1 Chr2 16765142 16765206 0 0 Deletion 64 downstream_gene_variant HET FN2663-S-1 Chr2 1897728 1897728 0 0 Insertion 1 upstream_gene_variant HET FN2663-S-1 Chr2 29911017 29911017 0 0 Insertion 5 INTERGENIC HET FN2663-S-1 Chr2 30444522 30444524 0 0 Deletion 2 upstream_gene_variant HET FN2663-S-1 Chr2 31215577 31215582 0 0 Deletion 5 INTERGENIC HOMO FN2663-S-1 Chr2 4353988 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr2 9767386 C-T 0 0 Single Base Substitution 0 INTRON HET FN2663-S-1 Chr3 13073337 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr3 13257933 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr3 13391047 13391099 0 0 Deletion 52 downstream_gene_variant HET FN2663-S-1 Chr3 28777327 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2663-S-1 Chr3 33589632 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2663-S-1 Chr4 11369937 11369937 0 0 Insertion 26 frameshift_variant HET LOC_Os04g20320 retrotransposon protein, putative, unclassified, expressed FN2663-S-1 Chr4 16395076 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr4 17135403 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr4 17138586 A-G 0 0 Single Base Substitution 0 INTRON HET FN2663-S-1 Chr4 24198392 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr4 29809959 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g49970 U-box, putative, expressed FN2663-S-1 Chr4 29809960 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g49970 U-box, putative, expressed FN2663-S-1 Chr4 407861 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2663-S-1 Chr4 8143895 8143916 0 0 Deletion 21 intron_variant HET FN2663-S-1 Chr4 9253948 9253949 0 0 Deletion 1 upstream_gene_variant HET FN2663-S-1 Chr5 10658231 10658232 0 0 Deletion 1 downstream_gene_variant HET FN2663-S-1 Chr5 12028165 12028166 0 0 Deletion 1 upstream_gene_variant HET FN2663-S-1 Chr5 16181265 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2663-S-1 Chr5 17268170 17268170 0 0 Insertion 2 upstream_gene_variant HET FN2663-S-1 Chr5 21261776 21261776 0 0 Insertion 1 upstream_gene_variant HET FN2663-S-1 Chr5 22010741 22010741 0 0 Insertion 1 upstream_gene_variant HET FN2663-S-1 Chr6 11197781 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr6 11197782 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr6 16565115 C-T 0 0 Single Base Substitution 0 INTRON HET FN2663-S-1 Chr6 18648236 18648236 0 0 Insertion 1 frameshift_variant HET LOC_Os06g32060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2663-S-1 Chr6 18868762 18868762 0 0 Insertion 1 upstream_gene_variant HET FN2663-S-1 Chr6 20008881 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g34380 transposon protein, putative, Pong sub-class FN2663-S-1 Chr6 21366309 Chr5 18202453 0 Translocation 0 FN2663-S-1 Chr6 22308469 C-T 0 0 Single Base Substitution 0 INTRON HET FN2663-S-1 Chr6 24593113 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr6 24853989 24853989 0 0 Insertion 6 upstream_gene_variant HET FN2663-S-1 Chr6 25801440 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g42940 retrotransposon protein, putative, unclassified FN2663-S-1 Chr6 26837998 26838004 0 0 Deletion 6 INTERGENIC HET FN2663-S-1 Chr6 30512994 30512994 0 0 Insertion 1 downstream_gene_variant HET FN2663-S-1 Chr7 10592581 10592601 0 0 Deletion 20 frameshift_variant&stop_lost&splice_region_variant HET LOC_Os07g17900 hypothetical protein FN2663-S-1 Chr7 11760565 11760565 0 0 Insertion 69 upstream_gene_variant HET FN2663-S-1 Chr7 13124828 Chr6 17429689 0 Translocation 0 LOC_Os07g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2663-S-1 Chr7 13525080 13525109 0 0 Deletion 29 downstream_gene_variant HET FN2663-S-1 Chr7 15062982 15062985 0 0 Deletion 3 INTERGENIC HET FN2663-S-1 Chr7 16445403 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2663-S-1 Chr8 15070088 15070091 0 0 Deletion 3 3_prime_UTR_variant HET FN2663-S-1 Chr8 15171857 15171948 0 0 Deletion 91 upstream_gene_variant HET FN2663-S-1 Chr8 16311064 16311065 0 0 Deletion 1 upstream_gene_variant HET FN2663-S-1 Chr8 5063863 Chr6 3022426 0 Translocation 0 FN2663-S-1 Chr8 5169462 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN2663-S-1 Chr8 8368102 8368106 0 0 Deletion 4 INTRON HOMO FN2663-S-1 Chr9 10813054 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21090 expressed protein FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21100 mov34/MPN/PAD-1 family protein, expressed FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21110 leucyl-tRNA synthetase, cytoplasmic, putative, expressed FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21120 armadillo/beta-catenin repeat family protein, putative, expressed FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21130 expressed protein FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21140 expressed protein FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21150 expressed protein FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21160 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21170 glucosyltransferase, putative, expressed FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21180 homeobox associated leucine zipper, putative, expressed FN2663-S-1 Chr9 12707001 12788000 0 0 Deletion 80999 LOC_Os09g21430 ZOS9-05 - C2H2 zinc finger protein, expressed FN2663-S-1 Chr9 12956001 12974000 0 0 Deletion 17999 LOC_Os09g21440 hypothetical protein FN2663-S-1 Chr9 12956001 12974000 0 0 Deletion 17999 LOC_Os09g21450 cyclin, putative, expressed FN2663-S-1 Chr9 12956001 12974000 0 0 Deletion 17999 LOC_Os09g23460 expressed protein FN2663-S-1 Chr9 2202998 2202998 0 0 Insertion 80 upstream_gene_variant HET FN2663-S-1 Chr9 3882032 Chr6 13458673 0 Translocation 0 FN2663-S-1 Chr9 5503737 5503739 0 0 Deletion 2 upstream_gene_variant HET FN2663-S-1 Chr9 939763 939763 0 0 Insertion 1 INTERGENIC HOMO