FN2666-S Chr1 12695248 12695254 0 0 Deletion 6 INTERGENIC HET FN2666-S Chr1 16175671 16175672 0 0 Deletion 1 INTERGENIC HET FN2666-S Chr1 17325886 17325887 0 0 Deletion 1 HET FN2666-S Chr1 17325886 17325887 0 0 Deletion 1 INTERGENIC HET FN2666-S Chr1 18421985 T-A 0 0 Single Base Substitution 0 HET FN2666-S Chr1 18701437 18701440 0 0 Deletion 3 HET FN2666-S Chr1 18701437 18701440 0 0 Deletion 3 INTERGENIC HET FN2666-S Chr1 1891943 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr1 19761982 19761985 0 0 Deletion 3 HET FN2666-S Chr1 19761982 19761985 0 0 Deletion 3 INTERGENIC HET FN2666-S Chr1 20153958 A-T 0 0 Single Base Substitution 0 HET FN2666-S Chr1 20682259 20682265 0 0 Deletion 6 INTRON HET FN2666-S Chr1 20697806 A-T 0 0 Single Base Substitution 0 HET FN2666-S Chr1 20697806 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr1 20737313 20737316 0 0 Deletion 3 HET FN2666-S Chr1 20737313 20737316 0 0 Deletion 3 INTERGENIC HET FN2666-S Chr1 23159960 T-G 0 0 Single Base Substitution 0 HET FN2666-S Chr1 23159960 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr1 28441023 28441034 0 0 Deletion 11 INTERGENIC HET FN2666-S Chr1 28575834 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr1 31730291 32301893 0 0 Inversion 571602 LOC_Os01g55150 bZIP transcription factor domain containing protein, expressed FN2666-S Chr1 31730294 32301907 0 0 Inversion 0 LOC_Os01g55150 bZIP transcription factor domain containing protein, expressed FN2666-S Chr1 31730294 32301907 0 0 Inversion 0 LOC_Os01g56100 BSD domain containing protein, expressed FN2666-S Chr1 31730294 32301907 0 0 Inversion 571613 LOC_Os01g55150 bZIP transcription factor domain containing protein, expressed FN2666-S Chr1 32138485 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr1 32138485 C-T 0 0 Single Base Substitution 0 INTRON HET FN2666-S Chr1 37566701 A-G 0 0 Single Base Substitution 0 HET FN2666-S Chr1 3945123 3945123 0 0 Insertion 2 INTERGENIC HET FN2666-S Chr1 3945123 3945125 0 0 Insertion 2 HET FN2666-S Chr1 43000361 43000361 0 0 Insertion 1 frameshift_variant HET LOC_Os01g74230 retrotransposon protein, putative, unclassified, expressed FN2666-S Chr10 13053586 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr10 13203684 G-A 0 0 Single Base Substitution 0 HET FN2666-S Chr10 13203684 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2666-S Chr10 14155163 14155164 0 0 Deletion 1 INTERGENIC HET FN2666-S Chr10 16879281 17459431 0 0 Inversion 0 LOC_Os10g32124 retrotransposon protein, putative, unclassified, expressed FN2666-S Chr10 16879281 17459431 0 0 Inversion 580150 FN2666-S Chr10 18607001 18620000 0 0 Deletion 12999 LOC_Os10g34880 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN2666-S Chr10 18607001 18620000 0 0 Deletion 12999 LOC_Os10g34884 RIPER7 - Ripening-related family protein precursor, expressed FN2666-S Chr10 19015843 19015849 0 0 Deletion 6 5_prime_UTR_variant HET FN2666-S Chr10 20419798 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr10 5040174 C-A 0 0 Single Base Substitution 0 HET FN2666-S Chr10 5040174 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr10 8867827 C-A 0 0 Single Base Substitution 0 HET FN2666-S Chr10 8867827 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr11 15215036 C-G 0 0 Single Base Substitution 0 HET FN2666-S Chr11 18074281 18074283 0 0 Deletion 2 HET FN2666-S Chr11 18074281 18074283 0 0 Deletion 2 INTERGENIC HET FN2666-S Chr11 20906425 A-T 0 0 Single Base Substitution 0 HET FN2666-S Chr11 20906425 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr11 26470538 26470553 0 0 Deletion 15 INTRON HET FN2666-S Chr11 4394509 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g08330 POLD1 - Putative DNA polymerase delta catalytic subunit, expressed FN2666-S Chr11 9323569 Chr6 23180839 0 Translocation 0 FN2666-S Chr12 11800702 11800710 0 0 Deletion 8 HET FN2666-S Chr12 11800702 11800710 0 0 Deletion 8 INTERGENIC HET FN2666-S Chr12 18860366 18860377 0 0 Deletion 11 intron_variant HET FN2666-S Chr12 21841571 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g35840 transposon protein, putative, CACTA, En/Spm sub-class FN2666-S Chr12 4215861 A-G 0 0 Single Base Substitution 0 HET FN2666-S Chr12 4215861 A-G 0 0 Single Base Substitution 0 INTRON HET FN2666-S Chr12 426978 426983 0 0 Insertion 5 HET FN2666-S Chr12 4719648 C-A 0 0 Single Base Substitution 0 HET FN2666-S Chr12 4719648 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr12 6457667 Chr10 3607567 0 Translocation 0 FN2666-S Chr2 20212545 G-A 0 0 Single Base Substitution 0 HET FN2666-S Chr2 20212545 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2666-S Chr2 20696147 G-A 0 0 Single Base Substitution 0 HET FN2666-S Chr2 20696147 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2666-S Chr2 24310552 24310552 0 0 Insertion 1 upstream_gene_variant HET FN2666-S Chr2 2890681 G-T 0 0 Single Base Substitution 0 Homo FN2666-S Chr2 2890681 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN2666-S Chr2 7956138 7956139 0 0 Deletion 1 Homo FN2666-S Chr2 7956138 7956139 0 0 Deletion 1 INTERGENIC HOMO FN2666-S Chr3 10788258 10788264 0 0 Deletion 6 INTERGENIC HET FN2666-S Chr3 13966957 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr3 13966957 C-T 0 0 Single Base Substitution 0 INTRON HET FN2666-S Chr3 1939037 1939058 0 0 Deletion 21 CODON_DELETION HET LOC_Os03g04220 glutathione S-transferase, putative, expressed FN2666-S Chr3 20831261 21068189 0 0 Inversion 236928 FN2666-S Chr3 20831273 21068192 0 0 Inversion 0 LOC_Os03g37554 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2666-S Chr3 20831273 21068192 0 0 Inversion 236919 FN2666-S Chr3 20834733 20834734 0 0 Deletion 1 INTERGENIC HET FN2666-S Chr3 21416922 21416923 0 0 Deletion 1 INTRON HET FN2666-S Chr3 21987387 G-A 0 0 Single Base Substitution 0 HET FN2666-S Chr3 22759606 22759618 0 0 Insertion 12 HET FN2666-S Chr3 23651742 G-A 0 0 Single Base Substitution 0 HET FN2666-S Chr3 24811687 T-G 0 0 Single Base Substitution 0 HET FN2666-S Chr3 24811687 T-G 0 0 Single Base Substitution 0 INTRON HET FN2666-S Chr3 25350185 25350189 0 0 Deletion 4 intergenic_region HET FN2666-S Chr3 27112892 27112899 0 0 Deletion 7 HET FN2666-S Chr3 27112892 27112899 0 0 Deletion 7 INTRON HET FN2666-S Chr3 27849846 27849863 0 0 Deletion 17 INTRON HET FN2666-S Chr3 30317157 30317177 0 0 Deletion 20 FRAME_SHIFT HOMO LOC_Os03g52860 lipoxygenase, putative, expressed FN2666-S Chr3 30317157 30317177 0 0 Deletion 20 frameshift_variant Homo LOC_Os03g52860 lipoxygenase, putative, expressed FN2666-S Chr3 32522079 32522080 0 0 Deletion 1 upstream_gene_variant HET FN2666-S Chr3 32771600 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g57480 retrotransposon protein, putative, unclassified, expressed FN2666-S Chr3 3699591 3699597 0 0 Deletion 6 HET FN2666-S Chr3 3699591 3699597 0 0 Deletion 6 INTERGENIC HET FN2666-S Chr4 1058037 1058038 0 0 Insertion 1 HET FN2666-S Chr4 10755647 10755654 0 0 Deletion 7 INTERGENIC HOMO FN2666-S Chr4 11663448 11663451 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os04g20790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2666-S Chr4 12905238 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g22790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2666-S Chr4 13439346 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2666-S Chr4 14548274 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g25170 retrotransposon protein, putative, unclassified, expressed FN2666-S Chr4 14548274 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g25170 retrotransposon protein, putative, unclassified, expressed FN2666-S Chr4 16656096 16656100 0 0 Deletion 4 INTERGENIC HET FN2666-S Chr4 21127408 T-A 0 0 Single Base Substitution 0 HET FN2666-S Chr4 21127408 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr4 24463387 G-A 0 0 Single Base Substitution 0 Homo FN2666-S Chr4 24463387 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2666-S Chr4 2692630 2692634 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os04g05380 retrotransposon protein, putative, unclassified FN2666-S Chr4 29084546 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g48760 leucine-rich repeat family protein, putative, expressed FN2666-S Chr4 30612116 G-A 0 0 Single Base Substitution 0 HET FN2666-S Chr4 3133414 3133414 0 0 Insertion 3 INTERGENIC HET FN2666-S Chr4 3133414 3133417 0 0 Insertion 3 HET FN2666-S Chr4 31805012 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr4 31847393 31847479 0 0 Deletion 86 upstream_gene_variant HET FN2666-S Chr4 33613056 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr4 4508022 A-T 0 0 Single Base Substitution 0 HET FN2666-S Chr4 5015787 C-A 0 0 Single Base Substitution 0 HET FN2666-S Chr4 5015787 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr5 10166310 A-T 0 0 Single Base Substitution 0 Homo FN2666-S Chr5 10166310 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2666-S Chr5 11988951 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g20430 retrotransposon protein, putative, unclassified, expressed FN2666-S Chr5 11988951 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g20430 retrotransposon protein, putative, unclassified, expressed FN2666-S Chr5 1771724 1771744 0 0 Deletion 20 upstream_gene_variant HET FN2666-S Chr5 21041230 21041247 0 0 Deletion 17 Homo FN2666-S Chr5 21041230 21041247 0 0 Deletion 17 INTRON HOMO FN2666-S Chr5 5559279 T-G 0 0 Single Base Substitution 0 HET FN2666-S Chr5 5559279 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr5 6189526 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g11040 retrotransposon protein, putative, unclassified, expressed FN2666-S Chr5 9434136 9434144 0 0 Deletion 8 HET FN2666-S Chr5 9434136 9434144 0 0 Deletion 8 INTRON HOMO FN2666-S Chr6 24354331 24354336 0 0 Deletion 5 Homo FN2666-S Chr6 24354331 24354336 0 0 Deletion 5 INTERGENIC HOMO FN2666-S Chr6 24613289 24613290 0 0 Deletion 1 intergenic_region HET FN2666-S Chr6 24721282 T-A 0 0 Single Base Substitution 0 Homo FN2666-S Chr6 24721282 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2666-S Chr6 25874329 25874338 0 0 Deletion 9 Homo FN2666-S Chr6 25874329 25874338 0 0 Deletion 9 INTRON HOMO FN2666-S Chr6 28214001 28226000 0 0 Deletion 11999 FN2666-S Chr6 4048626 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr6 4048626 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr6 8495887 G-T 0 0 Single Base Substitution 0 HET FN2666-S Chr6 9526565 G-T 0 0 Single Base Substitution 0 HET FN2666-S Chr7 10312621 T-A 0 0 Single Base Substitution 0 Homo FN2666-S Chr7 10312621 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2666-S Chr7 10312622 G-A 0 0 Single Base Substitution 0 Homo FN2666-S Chr7 10312622 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2666-S Chr7 10480702 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr7 11489776 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g19420 retrotransposon protein, putative, unclassified, expressed FN2666-S Chr7 11804591 11804600 0 0 Deletion 9 Homo FN2666-S Chr7 11804591 11804600 0 0 Deletion 9 INTERGENIC HOMO FN2666-S Chr7 22094637 C-A 0 0 Single Base Substitution 0 HET FN2666-S Chr7 22094637 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr7 2458484 T-G 0 0 Single Base Substitution 0 Homo FN2666-S Chr7 27702804 27702806 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os07g46430 expressed protein FN2666-S Chr7 3231286 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr7 3231286 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2666-S Chr7 3366552 A-T 0 0 Single Base Substitution 0 Homo FN2666-S Chr7 3366552 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2666-S Chr7 605204 605212 0 0 Deletion 8 FRAME_SHIFT HET LOC_Os07g01990 expressed protein FN2666-S Chr7 605204 605212 0 0 Deletion 8 frameshift_variant HET LOC_Os07g01990 expressed protein FN2666-S Chr8 10904192 C-T 0 0 Single Base Substitution 0 INTRON HET FN2666-S Chr8 15964272 C-G 0 0 Single Base Substitution 0 HET FN2666-S Chr8 15964272 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr8 2317753 T-A 0 0 Single Base Substitution 0 HET FN2666-S Chr8 2317753 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr8 24089478 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr8 27883310 27883320 0 0 Deletion 10 upstream_gene_variant HET FN2666-S Chr8 4957394 4957394 0 0 Insertion 6 INTERGENIC HET FN2666-S Chr8 4957394 4957400 0 0 Insertion 6 HET FN2666-S Chr8 5095144 5095145 0 0 Deletion 1 HET FN2666-S Chr8 5095144 5095145 0 0 Deletion 1 INTRON HET FN2666-S Chr8 8686659 8686660 0 0 Deletion 1 HET FN2666-S Chr8 8686659 8686660 0 0 Deletion 1 INTERGENIC HET FN2666-S Chr9 13061771 13061771 0 0 Insertion 2 INTERGENIC HET FN2666-S Chr9 13061771 13061773 0 0 Insertion 2 Homo FN2666-S Chr9 16153647 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g26620 auxin-repressed protein, putative, expressed FN2666-S Chr9 2270314 C-A 0 0 Single Base Substitution 0 HET FN2666-S Chr9 2270314 C-A 0 0 Single Base Substitution 0 INTRON HET FN2666-S Chr9 4621560 A-G 0 0 Single Base Substitution 0 HET FN2666-S Chr9 641106 C-T 0 0 Single Base Substitution 0 HET FN2666-S Chr9 641106 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr9 644892 A-G 0 0 Single Base Substitution 0 HET FN2666-S Chr9 644892 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2666-S Chr9 7316960 7316961 0 0 Deletion 1 HET FN2666-S Chr9 9676857 G-T 0 0 Single Base Substitution 0 Homo FN2666-S Chr9 9676857 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO