FN2667-S Chr1 11334190 G-C 0 0 Single Base Substitution 0 Homo FN2667-S Chr1 11334190 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN2667-S Chr1 12040921 T-C 0 0 Single Base Substitution 0 Homo FN2667-S Chr1 12040921 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2667-S Chr1 13012363 13012366 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os01g23144 retrotransposon protein, putative, unclassified, expressed FN2667-S Chr1 13012363 13012366 0 0 Deletion 3 disruptive_inframe_deletion Homo LOC_Os01g23144 retrotransposon protein, putative, unclassified, expressed FN2667-S Chr1 13679991 13679991 0 0 Insertion 1 downstream_gene_variant HET FN2667-S Chr1 21249906 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g37930 retrotransposon protein, putative, unclassified, expressed FN2667-S Chr1 22493925 C-G 0 0 Single Base Substitution 0 HET FN2667-S Chr1 29497419 A-G 0 0 Single Base Substitution 0 Homo FN2667-S Chr1 29497419 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2667-S Chr1 30580943 G-T 0 0 Single Base Substitution 0 HET FN2667-S Chr1 32363817 A-T 0 0 Single Base Substitution 0 HET FN2667-S Chr1 36324589 G-C 0 0 Single Base Substitution 0 HET FN2667-S Chr1 36792087 36792088 0 0 Deletion 1 upstream_gene_variant HET FN2667-S Chr1 39419949 39420120 0 0 Inversion 171 FN2667-S Chr1 4555088 4555088 0 0 Insertion 1 upstream_gene_variant HET FN2667-S Chr1 953179 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr10 10776979 10776990 0 0 Deletion 11 Homo FN2667-S Chr10 10776979 10776990 0 0 Deletion 11 INTERGENIC HOMO FN2667-S Chr10 12845922 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr10 12845922 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN2667-S Chr10 13029475 13029481 0 0 Deletion 6 HET FN2667-S Chr10 13534702 13534703 0 0 Deletion 1 INTERGENIC HET FN2667-S Chr10 15317901 T-C 0 0 Single Base Substitution 0 HET FN2667-S Chr10 15317901 T-C 0 0 Single Base Substitution 0 INTRON HET FN2667-S Chr10 16392350 16392350 0 0 Insertion 4 intron_variant HET FN2667-S Chr10 164478 Chr5 14966498 0 Translocation 0 FN2667-S Chr10 18190003 Chr4 8855441 0 Translocation 0 LOC_Os10g34078 retrotransposon protein, putative, unclassified FN2667-S Chr10 19291321 Chr2 16123058 0 Translocation 0 FN2667-S Chr10 2694518 Chr6 22683226 0 Translocation 0 FN2667-S Chr10 272497 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g01450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2667-S Chr10 272497 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g01450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2667-S Chr10 7833402 Chr9 2382386 0 Translocation 0 LOC_Os09g04470 retrotransposon protein, putative, Ty3-gypsy subclass FN2667-S Chr10 7833402 Chr9 2382386 0 Translocation 0 LOC_Os10g14950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2667-S Chr11 15078255 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr11 16829622 16829623 0 0 Deletion 1 downstream_gene_variant HET FN2667-S Chr11 17702497 17702499 0 0 Deletion 2 upstream_gene_variant HET FN2667-S Chr11 18180309 G-T 0 0 Single Base Substitution 0 HET FN2667-S Chr11 18371992 Chr10 879842 0 Translocation 0 LOC_Os11g31440 expressed protein FN2667-S Chr11 20945524 G-A 0 0 Single Base Substitution 0 INTRON HET FN2667-S Chr11 22529369 Chr8 10765832 0 Translocation 0 LOC_Os11g37990 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed FN2667-S Chr11 24965121 24965127 0 0 Deletion 6 HET FN2667-S Chr11 24965121 24965127 0 0 Deletion 6 INTERGENIC HOMO FN2667-S Chr11 27811016 T-A 0 0 Single Base Substitution 0 HET FN2667-S Chr11 3489464 3489482 0 0 Deletion 18 Homo FN2667-S Chr11 3489464 3489482 0 0 Deletion 18 INTRON HOMO FN2667-S Chr12 11689743 11689745 0 0 Deletion 2 upstream_gene_variant HET FN2667-S Chr12 12101219 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr12 12101219 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr12 18071896 G-C 0 0 Single Base Substitution 0 HET FN2667-S Chr12 18071896 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr12 18179682 Chr11 10218713 0 Translocation 0 FN2667-S Chr12 20175900 Chr11 13411844 0 Translocation 0 LOC_Os12g33360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2667-S Chr12 2450015 2450019 0 0 Deletion 4 INTRON HET FN2667-S Chr12 26966677 Chr6 4303675 0 Translocation 0 FN2667-S Chr12 27044721 Chr11 20669049 0 Translocation 0 FN2667-S Chr12 27530417 Chr8 7729489 0 Translocation 0 FN2667-S Chr12 478701 478703 0 0 Deletion 2 SPLICE_SITE_DONOR HET LOC_Os12g01790 retrotransposon protein, putative, unclassified, expressed FN2667-S Chr12 478701 478703 0 0 Deletion 2 splice_donor_variant&intron_variant HET LOC_Os12g01790 retrotransposon protein, putative, unclassified, expressed FN2667-S Chr12 4968337 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g09470 expressed protein FN2667-S Chr12 5013862 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr12 5013862 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2667-S Chr12 9834180 9834181 0 0 Deletion 1 upstream_gene_variant HET FN2667-S Chr2 20353988 A-G 0 0 Single Base Substitution 0 HET FN2667-S Chr2 20353988 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2667-S Chr2 26720549 C-T 0 0 Single Base Substitution 0 HET FN2667-S Chr2 26720549 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr2 30980440 G-C 0 0 Single Base Substitution 0 HET FN2667-S Chr2 31974692 C-T 0 0 Single Base Substitution 0 HET FN2667-S Chr2 31974692 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr2 32063413 T-C 0 0 Single Base Substitution 0 HET FN2667-S Chr2 33606493 33606501 0 0 Deletion 8 Homo FN2667-S Chr2 33606493 33606501 0 0 Deletion 8 INTERGENIC HET FN2667-S Chr2 35077154 35077154 0 0 Insertion 3 INTERGENIC HET FN2667-S Chr2 8443091 G-T 0 0 Single Base Substitution 0 HET FN2667-S Chr3 11999278 T-G 0 0 Single Base Substitution 0 HET FN2667-S Chr3 11999278 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr3 12451475 T-A 0 0 Single Base Substitution 0 HET FN2667-S Chr3 12451475 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr3 13956805 A-G 0 0 Single Base Substitution 0 HET FN2667-S Chr3 13956805 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2667-S Chr3 14454862 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g25320 peroxidase precursor, putative, expressed FN2667-S Chr3 15692309 Chr2 18844091 0 Translocation 0 FN2667-S Chr3 16391822 T-A 0 0 Single Base Substitution 0 HET FN2667-S Chr3 16391822 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr3 16962158 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr3 23942107 23942108 0 0 Insertion 1 HET FN2667-S Chr3 36195289 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr3 9184654 A-G 0 0 Single Base Substitution 0 HET FN2667-S Chr4 14851317 G-A 0 0 Single Base Substitution 0 Homo FN2667-S Chr4 14851317 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr4 19365432 19365436 0 0 Deletion 4 Homo FN2667-S Chr4 19365432 19365436 0 0 Deletion 4 INTERGENIC HOMO FN2667-S Chr4 21776572 G-A 0 0 Single Base Substitution 0 Homo FN2667-S Chr4 21776572 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2667-S Chr4 22811374 22811387 0 0 Deletion 13 Homo FN2667-S Chr4 22811374 22811387 0 0 Deletion 13 INTRON HET FN2667-S Chr4 22957084 A-G 0 0 Single Base Substitution 0 HET FN2667-S Chr4 23874808 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr4 26393515 C-A 0 0 Single Base Substitution 0 HET FN2667-S Chr4 26553387 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2667-S Chr4 27780665 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr4 28979118 C-A 0 0 Single Base Substitution 0 HET FN2667-S Chr4 29013810 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g48660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2667-S Chr4 4180235 C-G 0 0 Single Base Substitution 0 Homo FN2667-S Chr4 4180235 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2667-S Chr4 4185433 C-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2667-S Chr4 6174427 G-T 0 0 Single Base Substitution 0 HET FN2667-S Chr5 17394550 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g30070 retrotransposon protein, putative, unclassified, expressed FN2667-S Chr5 17394550 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g30070 retrotransposon protein, putative, unclassified, expressed FN2667-S Chr5 18580910 Chr1 7861353 0 Translocation 0 FN2667-S Chr5 23414631 A-C 0 0 Single Base Substitution 0 Homo FN2667-S Chr5 23414631 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2667-S Chr5 310454 C-A 0 0 Single Base Substitution 0 HET FN2667-S Chr5 8116387 8116387 0 0 Insertion 1 frameshift_variant HET LOC_Os05g14400 retrotransposon protein, putative, unclassified, expressed FN2667-S Chr5 8159933 T-C 0 0 Single Base Substitution 0 Homo FN2667-S Chr5 8159933 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2667-S Chr6 12977409 C-A 0 0 Single Base Substitution 0 HET FN2667-S Chr6 13062251 C-T 0 0 Single Base Substitution 0 HET FN2667-S Chr6 14860784 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g25370 retrotransposon protein, putative, unclassified FN2667-S Chr6 14860784 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g25370 retrotransposon protein, putative, unclassified FN2667-S Chr6 22359919 22359931 0 0 Deletion 12 HET FN2667-S Chr6 2396521 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr6 2396521 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2667-S Chr6 25627351 A-G 0 0 Single Base Substitution 0 HET FN2667-S Chr6 31136604 A-G 0 0 Single Base Substitution 0 Homo FN2667-S Chr6 31136604 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2667-S Chr6 6834121 C-T 0 0 Single Base Substitution 0 Homo FN2667-S Chr6 6834121 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2667-S Chr6 8351093 A-T 0 0 Single Base Substitution 0 Homo FN2667-S Chr6 8351093 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2667-S Chr7 10570155 T-C 0 0 Single Base Substitution 0 HET FN2667-S Chr7 12886092 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr7 15372330 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr7 15372330 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr7 160671 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr7 19416595 Chr3 1603838 0 Translocation 0 FN2667-S Chr7 26764960 26764961 0 0 Deletion 1 upstream_gene_variant HET FN2667-S Chr7 2758001 2773000 0 0 Deletion 14999 LOC_Os07g05750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2667-S Chr7 2758001 2773000 0 0 Deletion 14999 LOC_Os07g05760 expressed protein FN2667-S Chr7 2758001 2773000 0 0 Deletion 14999 LOC_Os07g05820 hydroxyacid oxidase 1, putative, expressed FN2667-S Chr7 2790773 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05810 glycine-rich protein, putative, expressed FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05820 hydroxyacid oxidase 1, putative, expressed FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05830 zinc-finger protein, putative, expressed FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05840 expressed protein FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05870 expressed protein FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05880 OsFBK18 - F-box domain and kelch repeat containing protein, expressed FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05890 expressed protein FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05900 ZOS7-02 - C2H2 zinc finger protein, expressed FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05910 expressed protein FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05920 retrotransposon protein, putative, unclassified FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05930 expressed protein FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05940 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05950 expressed protein FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05960 expressed protein FN2667-S Chr7 2797001 2896000 0 0 Deletion 98999 LOC_Os07g05970 ligA, putative, expressed FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05830 zinc-finger protein, putative, expressed FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05840 expressed protein FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05870 expressed protein FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05880 OsFBK18 - F-box domain and kelch repeat containing protein, expressed FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05890 expressed protein FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05900 ZOS7-02 - C2H2 zinc finger protein, expressed FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05910 expressed protein FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05920 retrotransposon protein, putative, unclassified FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05930 expressed protein FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05940 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05950 expressed protein FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05960 expressed protein FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05970 ligA, putative, expressed FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g05984 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2667-S Chr7 2800001 2900000 0 0 Deletion 99999 LOC_Os07g06910 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2667-S Chr7 3592723 T-C 0 0 Single Base Substitution 0 HET FN2667-S Chr7 3592723 T-C 0 0 Single Base Substitution 0 INTRON HET FN2667-S Chr7 6477852 6477853 0 0 Deletion 1 upstream_gene_variant HET FN2667-S Chr7 6676403 G-A 0 0 Single Base Substitution 0 HET FN2667-S Chr7 6676403 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr7 9835937 C-T 0 0 Single Base Substitution 0 HET FN2667-S Chr8 12161356 12161357 0 0 Deletion 1 upstream_gene_variant HET FN2667-S Chr8 13697075 T-A 0 0 Single Base Substitution 0 HET FN2667-S Chr8 17916507 17916508 0 0 Insertion 1 HET FN2667-S Chr8 21596089 T-A 0 0 Single Base Substitution 0 HET FN2667-S Chr8 21596089 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr8 24746569 C-A 0 0 Single Base Substitution 0 HET FN2667-S Chr8 27808093 27808096 0 0 Deletion 3 INTRON HET FN2667-S Chr8 5912934 5912942 0 0 Deletion 8 upstream_gene_variant HET FN2667-S Chr9 11531490 11531490 0 0 Insertion 1 intergenic_region HET FN2667-S Chr9 13433001 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2667-S Chr9 14978876 G-T 0 0 Single Base Substitution 0 HET FN2667-S Chr9 2749621 T-G 0 0 Single Base Substitution 0 Homo FN2667-S Chr9 2749621 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN2667-S Chr9 3016876 T-C 0 0 Single Base Substitution 0 HET FN2667-S Chr9 3016876 T-C 0 0 Single Base Substitution 0 INTRON HET FN2667-S Chr9 3164651 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g06660 expressed protein FN2667-S Chr9 7075511 T-C 0 0 Single Base Substitution 0 HET FN2667-S Chr9 7139545 7139547 0 0 Deletion 2 Homo FN2667-S Chr9 7139545 7139547 0 0 Deletion 2 INTRON HOMO FN2667-S Chr9 8289918 Chr6 11646591 0 Translocation 0