FN2669-S Chr1 10905318 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr1 12679750 12679752 0 0 Deletion 2 INTERGENIC HET FN2669-S Chr1 16933074 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g30980 retrotransposon protein, putative, unclassified, expressed FN2669-S Chr1 22415418 22415422 0 0 Deletion 4 INTERGENIC HET FN2669-S Chr1 23299986 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr1 26741041 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr1 28241028 28241034 0 0 Deletion 6 INTERGENIC HET FN2669-S Chr1 3423610 3423615 0 0 Deletion 5 INTRON HET FN2669-S Chr1 40519340 40519340 0 0 Insertion 44 upstream_gene_variant HET FN2669-S Chr1 467591 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g01850 transposon protein, putative, unclassified, expressed FN2669-S Chr10 11521580 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr10 16478869 17124054 0 0 Inversion 645185 FN2669-S Chr10 16479154 17124055 0 0 Inversion 644901 FN2669-S Chr10 2580350 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr11 10341713 Chr10 16478869 0 Translocation 0 FN2669-S Chr11 10341715 Chr10 16479149 0 Translocation 0 FN2669-S Chr11 11380109 11380110 0 0 Deletion 1 upstream_gene_variant HET FN2669-S Chr11 27266307 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr11 9642050 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr12 11616289 11616290 0 0 Deletion 1 upstream_gene_variant HET FN2669-S Chr12 12483435 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr12 17334798 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2669-S Chr12 22460491 22460504 0 0 Deletion 13 FRAME_SHIFT HOMO LOC_Os12g36670 F-box/LRR-repeat protein 3, putative, expressed FN2669-S Chr12 24606412 24606430 0 0 Deletion 18 downstream_gene_variant HET FN2669-S Chr12 5343305 5343305 0 0 Insertion 2 frameshift_variant HET LOC_Os12g10090 retrotransposon protein, putative, Ty1-copia subclass FN2669-S Chr12 9615535 9615628 0 0 Deletion 93 upstream_gene_variant HET FN2669-S Chr2 10449090 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2669-S Chr2 10891842 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr2 17256557 17256565 0 0 Deletion 8 INTERGENIC HET FN2669-S Chr2 17739096 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr2 19577666 19577669 0 0 Deletion 3 INTERGENIC HET FN2669-S Chr2 21223671 21223671 0 0 Insertion 1 upstream_gene_variant HET FN2669-S Chr2 21647614 21647618 0 0 Deletion 4 upstream_gene_variant HET FN2669-S Chr2 22702105 22702107 0 0 Deletion 2 upstream_gene_variant HET FN2669-S Chr2 23627297 23627298 0 0 Deletion 1 frameshift_variant HET LOC_Os02g39120 transposon protein, putative, unclassified, expressed FN2669-S Chr2 2418968 2418969 0 0 Deletion 1 downstream_gene_variant HET FN2669-S Chr2 24883218 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr2 5757415 G-A 0 0 Single Base Substitution 0 INTRON HET FN2669-S Chr3 18439267 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2669-S Chr3 18699014 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr3 201801 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr3 23254062 23254073 0 0 Deletion 11 INTERGENIC HET FN2669-S Chr3 23315249 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g41960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2669-S Chr3 23901198 23901198 0 0 Insertion 1 upstream_gene_variant HET FN2669-S Chr3 33952328 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g59630 retrotransposon protein, putative, unclassified, expressed FN2669-S Chr3 36191175 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr4 16473545 16473545 0 0 Insertion 5 frameshift_variant HET LOC_Os04g27890 retrotransposon protein, putative, unclassified, expressed FN2669-S Chr4 1731385 1731387 0 0 Deletion 2 downstream_gene_variant HET FN2669-S Chr4 27054128 27054129 0 0 Deletion 1 downstream_gene_variant HET FN2669-S Chr4 3000850 C-A 0 0 Single Base Substitution 0 INTRON HET FN2669-S Chr4 3316310 C-T 0 0 Single Base Substitution 0 INTRON HET FN2669-S Chr4 34580583 Chr1 2756226 0 Translocation 0 FN2669-S Chr4 9249634 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g16910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2669-S Chr5 11559291 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g19850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2669-S Chr5 14870455 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr5 29370263 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g51200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2669-S Chr5 3998081 3998090 0 0 Deletion 9 INTERGENIC HET FN2669-S Chr5 5319256 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr5 8256416 8256416 0 0 Insertion 1 intergenic_region HET FN2669-S Chr6 1150471 1150480 0 0 Deletion 9 INTERGENIC HET FN2669-S Chr6 14560063 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g24800 retrotransposon protein, putative, unclassified, expressed FN2669-S Chr6 15303943 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN2669-S Chr6 19268925 Chr1 15459829 0 Translocation 0 FN2669-S Chr6 19958316 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2669-S Chr6 5276038 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr6 9639759 9639759 0 0 Insertion 44 intron_variant HET FN2669-S Chr7 10938688 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr7 11557878 A-T 0 0 Single Base Substitution 0 INTRON HET FN2669-S Chr7 12935761 C-T 0 0 Single Base Substitution 0 INTRON HET FN2669-S Chr7 12960193 12960194 0 0 Deletion 1 INTERGENIC HET FN2669-S Chr7 18465279 18465280 0 0 Deletion 1 downstream_gene_variant HET FN2669-S Chr7 23696021 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr7 27582914 C-T 0 0 Single Base Substitution 0 INTRON HET FN2669-S Chr8 10507488 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr8 11416088 11416093 0 0 Deletion 5 INTERGENIC HET FN2669-S Chr8 1381500 1381501 0 0 Deletion 1 INTRON HOMO FN2669-S Chr8 18410445 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2669-S Chr8 18772001 18799000 0 0 Deletion 26999 LOC_Os08g30540 expressed protein FN2669-S Chr8 18772001 18799000 0 0 Deletion 26999 LOC_Os08g34520 hypothetical protein FN2669-S Chr8 18788919 18788919 0 0 Insertion 1 intergenic_region HET FN2669-S Chr8 21064793 21064794 0 0 Deletion 1 downstream_gene_variant HET FN2669-S Chr8 24349849 24349850 0 0 Deletion 1 INTERGENIC HET FN2669-S Chr8 2675333 Chr2 3777780 0 Translocation 0 FN2669-S Chr8 4633708 A-G 0 0 Single Base Substitution 0 INTRON HET FN2669-S Chr8 4935346 Chr2 23342788 0 Translocation 0 LOC_Os02g38620 retrotransposon protein, putative, Ty3-gypsy subclass FN2669-S Chr8 4935346 Chr2 23342788 0 Translocation 0 LOC_Os08g08550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2669-S Chr9 13580714 13580715 0 0 Deletion 1 3_prime_UTR_variant HET FN2669-S Chr9 16351084 16351093 0 0 Deletion 9 INTERGENIC HOMO FN2669-S Chr9 3093750 3093750 0 0 Insertion 12 upstream_gene_variant HET FN2669-S Chr9 4336918 4336919 0 0 Deletion 1 downstream_gene_variant HET FN2669-S Chr9 5950876 5950876 0 0 Insertion 4 upstream_gene_variant HET