FN2676-S Chr1 10136699 10136717 0 0 Deletion 18 disruptive_inframe_deletion HET LOC_Os01g18090 expressed protein FN2676-S Chr1 19495194 G-A 0 0 Single Base Substitution 0 Homo FN2676-S Chr1 22397016 A-G 0 0 Single Base Substitution 0 HET FN2676-S Chr1 22492265 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g39870 expressed protein FN2676-S Chr1 25294885 C-T 0 0 Single Base Substitution 0 Homo FN2676-S Chr1 25928313 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr10 12158976 12158978 0 0 Deletion 2 HET FN2676-S Chr10 1427027 1427028 0 0 Deletion 1 HET FN2676-S Chr10 16362199 T-C 0 0 Single Base Substitution 0 Homo FN2676-S Chr10 18113674 18113676 0 0 Deletion 2 HET FN2676-S Chr11 19930910 Chr8 19933685 0 Translocation 0 FN2676-S Chr11 24676998 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr11 2977200 T-A 0 0 Single Base Substitution 0 HET FN2676-S Chr11 3911697 3911699 0 0 Deletion 2 frameshift_variant Homo LOC_Os11g07650 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr12 10180781 A-G 0 0 Single Base Substitution 0 HET FN2676-S Chr12 13647865 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g24010 hypothetical protein FN2676-S Chr12 15653586 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g26710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2676-S Chr12 17616139 17616219 0 0 Deletion 80 HET FN2676-S Chr12 25951140 25951141 0 0 Deletion 1 HET FN2676-S Chr12 26706001 26733000 0 0 Deletion 26999 LOC_Os12g42990 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr12 26706001 26733000 0 0 Deletion 26999 LOC_Os12g43000 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr12 26706001 26733000 0 0 Deletion 26999 LOC_Os12g43020 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr12 26706001 26733000 0 0 Deletion 26999 LOC_Os12g43034 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr12 3996928 3997152 0 0 Inversion 0 FN2676-S Chr2 24802183 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g40930 transposon protein, putative, CACTA, En/Spm sub-class FN2676-S Chr3 10714486 C-G 0 0 Single Base Substitution 0 HET FN2676-S Chr3 1117556 G-T 0 0 Single Base Substitution 0 HET FN2676-S Chr3 11536130 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr3 13333457 13333460 0 0 Deletion 3 HET FN2676-S Chr3 18173179 18173183 0 0 Deletion 4 HET FN2676-S Chr3 20505758 C-G 0 0 Single Base Substitution 0 HET FN2676-S Chr3 20613117 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr3 2955587 2955589 0 0 Insertion 2 HET FN2676-S Chr3 3068188 C-T 0 0 Single Base Substitution 0 HET FN2676-S Chr3 34355514 G-A 0 0 Single Base Substitution 0 Homo FN2676-S Chr3 7603792 T-A 0 0 Single Base Substitution 0 HET FN2676-S Chr4 10922076 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g19610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2676-S Chr4 12083701 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr4 15524515 A-G 0 0 Single Base Substitution 0 HET FN2676-S Chr4 15919382 C-T 0 0 Single Base Substitution 0 HET FN2676-S Chr4 17637753 C-A 0 0 Single Base Substitution 0 HET FN2676-S Chr4 18345079 18345089 0 0 Deletion 10 HET FN2676-S Chr4 22642831 C-T 0 0 Single Base Substitution 0 Homo FN2676-S Chr4 32794382 C-T 0 0 Single Base Substitution 0 HET FN2676-S Chr4 35482433 C-T 0 0 Single Base Substitution 0 HET FN2676-S Chr4 6794965 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g12310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2676-S Chr4 7470993 A-G 0 0 Single Base Substitution 0 HET FN2676-S Chr5 11095344 C-T 0 0 Single Base Substitution 0 HET FN2676-S Chr5 11308645 G-T 0 0 Single Base Substitution 0 HET FN2676-S Chr5 1577885 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g03650 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr5 25881405 25881412 0 0 Deletion 7 frameshift_variant HET LOC_Os05g44470 retrotransposon protein, putative, Ty3-gypsy subclass FN2676-S Chr5 5209376 G-T 0 0 Single Base Substitution 0 HET FN2676-S Chr6 17433134 Chr1 11574638 0 Translocation 0 FN2676-S Chr6 19582598 A-G 0 0 Single Base Substitution 0 Homo FN2676-S Chr6 19660768 19660771 0 0 Insertion 3 HET FN2676-S Chr6 23730188 23890468 0 0 Inversion 0 FN2676-S Chr6 23730195 23890467 0 0 Inversion 0 FN2676-S Chr6 24212849 C-T 0 0 Single Base Substitution 0 HET FN2676-S Chr6 24592642 C-T 0 0 Single Base Substitution 0 HET FN2676-S Chr6 25664329 A-G 0 0 Single Base Substitution 0 HET FN2676-S Chr6 27899093 T-C 0 0 Single Base Substitution 0 Homo FN2676-S Chr6 28954152 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr6 3013060 3013067 0 0 Deletion 7 Homo FN2676-S Chr6 3899637 C-T 0 0 Single Base Substitution 0 HET FN2676-S Chr6 4396128 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g08790 ORC1 - Putative origin recognition complex subunit 1, expressed FN2676-S Chr6 5543356 5543359 0 0 Insertion 3 HET FN2676-S Chr6 5797914 C-T 0 0 Single Base Substitution 0 Homo FN2676-S Chr6 6703835 6703840 0 0 Deletion 5 frameshift_variant Homo LOC_Os06g12370 OsFtsH6 FtsH protease, homologue of AtFtsH6, expressed FN2676-S Chr6 7454504 7454520 0 0 Deletion 16 Homo FN2676-S Chr6 7553016 C-T 0 0 Single Base Substitution 0 HET FN2676-S Chr7 10822060 10822070 0 0 Deletion 10 frameshift_variant Homo LOC_Os07g18250 expressed protein FN2676-S Chr7 16792729 C-A 0 0 Single Base Substitution 0 HET FN2676-S Chr7 18441336 18441351 0 0 Deletion 15 disruptive_inframe_deletion Homo LOC_Os07g31160 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr7 2203479 G-T 0 0 Single Base Substitution 0 HET FN2676-S Chr7 9094420 9627054 0 0 Inversion 0 LOC_Os07g15660 retrotransposon protein, putative, LINE subclass FN2676-S Chr7 9094420 9627054 0 0 Inversion 0 LOC_Os07g16430 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr7 9625212 9633399 0 0 Inversion 0 LOC_Os07g16430 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr7 9625212 9633399 0 0 Inversion 0 LOC_Os07g16450 transposon protein, putative, unclassified FN2676-S Chr7 9625219 Chr3 25503162 0 Translocation 0 LOC_Os07g16430 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr7 9625221 Chr3 25493757 0 Translocation 0 LOC_Os07g16430 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr7 9627013 Chr3 25493773 0 Translocation 0 LOC_Os07g16430 retrotransposon protein, putative, unclassified, expressed FN2676-S Chr8 12109439 Chr2 9635747 0 Translocation 0 LOC_Os08g20180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2676-S Chr8 13753851 A-G 0 0 Single Base Substitution 0 HET FN2676-S Chr8 16872830 16872832 0 0 Deletion 2 HET FN2676-S Chr8 2220498 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g04510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2676-S Chr8 4961782 T-A 0 0 Single Base Substitution 0 Homo FN2676-S Chr8 6013372 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr8 7477597 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g12640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2676-S Chr9 10259613 A-G 0 0 Single Base Substitution 0 HET FN2676-S Chr9 10501548 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr9 14370664 T-C 0 0 Single Base Substitution 0 HET FN2676-S Chr9 14702958 T-A 0 0 Single Base Substitution 0 HET FN2676-S Chr9 16282015 G-C 0 0 Single Base Substitution 0 HET FN2676-S Chr9 16970460 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr9 17981399 C-A 0 0 Single Base Substitution 0 HET FN2676-S Chr9 2975697 G-A 0 0 Single Base Substitution 0 HET FN2676-S Chr9 562969 T-C 0 0 Single Base Substitution 0 HET