FN2678-S-1 Chr1 11167046 T-C 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2678-S-1 Chr1 16978784 16978785 0 0 Deletion 1 upstream_gene_variant HET FN2678-S-1 Chr1 17159534 17159534 0 0 Insertion 32 downstream_gene_variant HET FN2678-S-1 Chr1 32302099 A-C 0 0 Single Base Substitution 0 INTRON HET FN2678-S-1 Chr1 38942486 38942497 0 0 Deletion 11 INTERGENIC HET FN2678-S-1 Chr1 4802823 4802823 0 0 Insertion 8 upstream_gene_variant HET FN2678-S-1 Chr1 9851622 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr10 17398030 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr10 17398031 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr10 22949865 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g42570 retrotransposon protein, putative, unclassified, expressed FN2678-S-1 Chr10 2324803 2324832 0 0 Deletion 29 upstream_gene_variant HET FN2678-S-1 Chr10 6432685 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2678-S-1 Chr10 6927113 6927202 0 0 Deletion 89 splice_acceptor_variant&splice_donor_variant&disruptive_inframe_deletion&splice_region_variant&intro HET LOC_Os10g12450 expressed protein FN2678-S-1 Chr11 26034302 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr11 28340747 C-T 0 0 Single Base Substitution 0 INTRON HET FN2678-S-1 Chr11 3867206 3867208 0 0 Deletion 2 INTERGENIC HET FN2678-S-1 Chr11 7212697 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr11 8293732 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr12 15321139 Chr11 16186543 0 Translocation 0 FN2678-S-1 Chr12 27056762 27056772 0 0 Deletion 10 FRAME_SHIFT HET LOC_Os12g43590 FAD dependent oxidoreductase domain containing protein, expressed FN2678-S-1 Chr12 5133230 C-A 0 0 Single Base Substitution 0 INTRON HET FN2678-S-1 Chr2 22742246 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2678-S-1 Chr2 25862001 25891000 0 0 Deletion 28999 LOC_Os02g42990 OsSAUR11 - Auxin-responsive SAUR gene family member, expressed FN2678-S-1 Chr2 25862001 25891000 0 0 Deletion 28999 LOC_Os02g43000 cysteine-rich repeat secretory protein 15 precursor, putative, expressed FN2678-S-1 Chr2 25862001 25891000 0 0 Deletion 28999 LOC_Os02g43010 vacuolar-processing enzyme precursor, putative, expressed FN2678-S-1 Chr2 25862001 25891000 0 0 Deletion 28999 LOC_Os02g43050 kinesin motor domain containing protein, expressed FN2678-S-1 Chr2 27429010 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr2 32513178 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr2 32614635 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr2 33056602 A-T 0 0 Single Base Substitution 0 INTRON HET FN2678-S-1 Chr2 471775 471775 0 0 Insertion 1 INTERGENIC HET FN2678-S-1 Chr3 16623311 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g29224 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2678-S-1 Chr3 25435081 25435081 0 0 Insertion 52 upstream_gene_variant HET FN2678-S-1 Chr4 15166736 15166738 0 0 Deletion 2 upstream_gene_variant HET FN2678-S-1 Chr4 28213450 Chr1 31774263 0 Translocation 0 FN2678-S-1 Chr4 28699585 28699589 0 0 Deletion 4 INTERGENIC HET FN2678-S-1 Chr4 30565172 30565180 0 0 Deletion 8 INTRON HET FN2678-S-1 Chr4 31607932 31607932 0 0 Insertion 1 3_prime_UTR_variant HET FN2678-S-1 Chr4 32198001 32209000 0 0 Deletion 10999 LOC_Os04g54030 hypothetical protein FN2678-S-1 Chr4 32198001 32209000 0 0 Deletion 10999 LOC_Os04g54040 expressed protein FN2678-S-1 Chr4 32198001 32209000 0 0 Deletion 10999 LOC_Os04g54050 retrotransposon protein, putative, unclassified FN2678-S-1 Chr4 32198001 32209000 0 0 Deletion 10999 LOC_Os05g03080 expressed protein FN2678-S-1 Chr4 35495935 35495935 0 0 Insertion 2 intergenic_region HET FN2678-S-1 Chr4 6734281 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr4 6734282 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr5 10747274 10747275 0 0 Deletion 1 frameshift_variant HET LOC_Os05g18560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2678-S-1 Chr5 10951862 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr5 18968676 18968676 0 0 Insertion 59 upstream_gene_variant HET FN2678-S-1 Chr5 6823938 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr6 10998958 10998959 0 0 Deletion 1 INTERGENIC HET FN2678-S-1 Chr6 16817203 Chr1 29886748 0 Translocation 0 FN2678-S-1 Chr6 24551280 24551280 0 0 Insertion 2 INTERGENIC HET FN2678-S-1 Chr6 26448181 26448186 0 0 Deletion 5 INTERGENIC HET FN2678-S-1 Chr6 30720070 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2678-S-1 Chr6 634833 Chr2 17757429 0 Translocation 0 LOC_Os06g02130 G-protein alpha subunit, putative, expressed FN2678-S-1 Chr6 8535685 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN2678-S-1 Chr7 21727001 21736000 0 0 Deletion 8999 LOC_Os07g36360 OsFBO19 - F-box and other domain containing protein, expressed FN2678-S-1 Chr7 21740001 21766000 0 0 Deletion 25999 LOC_Os07g36370 OsFBX247 - F-box domain containing protein, expressed FN2678-S-1 Chr7 21740001 21766000 0 0 Deletion 25999 LOC_Os07g36390 PPR repeat containing protein, expressed FN2678-S-1 Chr7 21740001 21766000 0 0 Deletion 25999 LOC_Os07g36400 expressed protein FN2678-S-1 Chr7 21740001 21766000 0 0 Deletion 25999 LOC_Os07g38390 chalcone isomerase, putative, expressed FN2678-S-1 Chr7 5432815 5432867 0 0 Deletion 52 intron_variant HET FN2678-S-1 Chr7 6087038 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2678-S-1 Chr8 18795157 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2678-S-1 Chr8 21265259 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g33960 expressed protein FN2678-S-1 Chr8 5871009 5871012 0 0 Deletion 3 inframe_deletion HET LOC_Os08g10120 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2678-S-1 Chr9 18957063 18957071 0 0 Deletion 8 INTERGENIC HOMO FN2678-S-1 Chr9 5127718 5127764 0 0 Deletion 46 downstream_gene_variant HET FN2678-S-1 Chr9 5964983 5964983 0 0 Insertion 41 intron_variant HET