FN2682-S Chr1 11153921 T-C 0 0 Single Base Substitution 0 HET FN2682-S Chr1 11153921 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr1 13763923 13763923 0 0 Insertion 1 upstream_gene_variant HET FN2682-S Chr1 15695992 15695993 0 0 Deletion 1 HET FN2682-S Chr1 15695992 15695993 0 0 Deletion 1 downstream_gene_variant HET FN2682-S Chr1 17788143 C-T 0 0 Single Base Substitution 0 HET FN2682-S Chr1 17788143 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr1 19729900 19729901 0 0 Insertion 1 HET FN2682-S Chr1 20149490 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr1 21588752 G-A 0 0 Single Base Substitution 0 HET FN2682-S Chr1 21588752 G-A 0 0 Single Base Substitution 0 INTRON HET FN2682-S Chr1 31065292 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g54010 peptidase, putative, expressed FN2682-S Chr1 32479365 A-G 0 0 Single Base Substitution 0 HET FN2682-S Chr1 32479365 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr1 35770112 35770112 0 0 Insertion 2 INTRON HET FN2682-S Chr1 37206277 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr1 41546204 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr1 9031972 9031972 0 0 Insertion 1 upstream_gene_variant HET FN2682-S Chr1 9857319 C-T 0 0 Single Base Substitution 0 HET FN2682-S Chr10 15840902 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr10 3923863 3923864 0 0 Insertion 1 HET FN2682-S Chr10 6900321 Chr5 2479642 0 Translocation 0 FN2682-S Chr11 11937328 11937329 0 0 Deletion 1 upstream_gene_variant HET FN2682-S Chr11 14181134 14181152 0 0 Deletion 18 downstream_gene_variant HET FN2682-S Chr11 14664421 C-T 0 0 Single Base Substitution 0 HET FN2682-S Chr11 14664421 C-T 0 0 Single Base Substitution 0 INTRON HET FN2682-S Chr11 15779026 Chr9 11329565 0 Translocation 0 LOC_Os11g27420 hypothetical protein FN2682-S Chr11 19974998 T-C 0 0 Single Base Substitution 0 Homo FN2682-S Chr11 19974998 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2682-S Chr11 20878309 20878331 0 0 Insertion 22 HET FN2682-S Chr11 22608894 Chr9 11816277 0 Translocation 0 FN2682-S Chr11 22773586 Chr3 18629691 0 Translocation 0 FN2682-S Chr11 27275450 G-C 0 0 Single Base Substitution 0 HET FN2682-S Chr11 27275450 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr11 27827270 Chr6 25897960 0 Translocation 0 FN2682-S Chr11 5959093 6671257 0 0 Inversion 712164 FN2682-S Chr12 11475623 11475623 0 0 Insertion 1 upstream_gene_variant HET FN2682-S Chr12 11484604 11484604 0 0 Insertion 1 upstream_gene_variant HET FN2682-S Chr12 13377758 13406256 0 0 Inversion 28498 LOC_Os12g23600 expressed protein FN2682-S Chr12 13377758 13406256 0 0 Inversion 28498 LOC_Os12g23610 ATP synthase, A subunit family protein, putative, expressed FN2682-S Chr12 13547459 Chr11 22973797 0 Translocation 0 FN2682-S Chr12 13547459 Chr11 22973797 0 Translocation 0 LOC_Os11g38710 expressed protein FN2682-S Chr12 15173894 A-G 0 0 Single Base Substitution 0 HET FN2682-S Chr12 19027328 19027354 0 0 Deletion 26 intergenic_region HET FN2682-S Chr12 23989381 G-C 0 0 Single Base Substitution 0 HET FN2682-S Chr12 23989381 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr12 2399395 Chr1 32064842 0 Translocation 0 LOC_Os12g05334 hypothetical protein FN2682-S Chr12 24883607 Chr11 10658313 0 Translocation 0 FN2682-S Chr12 5152579 T-C 0 0 Single Base Substitution 0 HET FN2682-S Chr12 5152579 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr12 6993479 Chr1 576210 0 Translocation 0 FN2682-S Chr2 10154136 T-A 0 0 Single Base Substitution 0 HET FN2682-S Chr2 10154136 T-A 0 0 Single Base Substitution 0 INTRON HET FN2682-S Chr2 14649463 A-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g25180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2682-S Chr2 1504979 1504980 0 0 Deletion 1 upstream_gene_variant HET FN2682-S Chr2 19521372 19521372 0 0 Insertion 1 upstream_gene_variant HET FN2682-S Chr2 27283855 27283856 0 0 Insertion 1 HET FN2682-S Chr2 32441021 32441167 0 0 Deletion 146 HET FN2682-S Chr2 34104776 34104783 0 0 Deletion 7 upstream_gene_variant HET FN2682-S Chr2 5240006 G-A 0 0 Single Base Substitution 0 HET FN2682-S Chr2 5240006 G-A 0 0 Single Base Substitution 0 INTRON HET FN2682-S Chr2 7665574 A-T 0 0 Single Base Substitution 0 HET FN2682-S Chr2 7665574 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr2 9037203 9037204 0 0 Deletion 1 HET FN2682-S Chr2 9353291 9353314 0 0 Deletion 23 upstream_gene_variant HET FN2682-S Chr3 20277937 G-A 0 0 Single Base Substitution 0 INTRON HET FN2682-S Chr3 22381645 22381649 0 0 Deletion 4 UTR_3_PRIME HET FN2682-S Chr3 25017619 25017622 0 0 Deletion 3 downstream_gene_variant HET FN2682-S Chr3 30699164 30699168 0 0 Deletion 4 INTERGENIC HOMO FN2682-S Chr3 30924280 30924316 0 0 Insertion 36 HET FN2682-S Chr3 33993649 33993650 0 0 Insertion 1 HET FN2682-S Chr3 7300759 7300759 0 0 Insertion 1 upstream_gene_variant HET FN2682-S Chr3 902142 A-T 0 0 Single Base Substitution 0 HET FN2682-S Chr3 902142 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr3 956984 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g02580 armadillo, putative, expressed FN2682-S Chr4 13737263 13737263 0 0 Insertion 1 downstream_gene_variant HET FN2682-S Chr4 19950274 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr4 25995558 25995558 0 0 Insertion 1 upstream_gene_variant HET FN2682-S Chr4 26360681 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr4 26360682 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr4 26613156 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g44980 short-chain dehydrogenase/reductase, putative, expressed FN2682-S Chr4 26916884 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr4 29972042 T-C 0 0 Single Base Substitution 0 START_GAINED HET FN2682-S Chr4 6334994 C-A 0 0 Single Base Substitution 0 Homo FN2682-S Chr4 6334994 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2682-S Chr4 9331681 9331697 0 0 Deletion 16 upstream_gene_variant HET FN2682-S Chr4 9947091 C-T 0 0 Single Base Substitution 0 INTRON HET FN2682-S Chr5 25256675 C-T 0 0 Single Base Substitution 0 Homo FN2682-S Chr5 25256675 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2682-S Chr5 29114308 29114310 0 0 Insertion 2 HET FN2682-S Chr5 5022236 Chr2 25341897 0 Translocation 0 FN2682-S Chr5 5022236 Chr2 25341897 0 Translocation 0 LOC_Os02g42134 ARF GTPase-activating domain-containing protein, putative, expressed FN2682-S Chr5 8116387 8116388 0 0 Insertion 1 frameshift_variant HET LOC_Os05g14400 retrotransposon protein, putative, unclassified, expressed FN2682-S Chr5 8456202 C-T 0 0 Single Base Substitution 0 HET FN2682-S Chr5 9618704 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g16880 retrotransposon protein, putative, Ty3-gypsy subclass FN2682-S Chr6 10671820 10671822 0 0 Deletion 2 intron_variant HET FN2682-S Chr6 19294439 19294440 0 0 Deletion 1 intron_variant HET FN2682-S Chr6 19955775 Chr4 31332668 0 Translocation 0 FN2682-S Chr6 28483092 G-A 0 0 Single Base Substitution 0 HET FN2682-S Chr6 28483092 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr6 29254786 29254788 0 0 Insertion 2 HET FN2682-S Chr6 30186036 A-C 0 0 Single Base Substitution 0 HET FN2682-S Chr6 7076495 A-G 0 0 Single Base Substitution 0 HET FN2682-S Chr7 12164891 12164891 0 0 Insertion 1 intergenic_region HET FN2682-S Chr7 12229807 12229808 0 0 Deletion 1 intergenic_region HET FN2682-S Chr7 15016641 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2682-S Chr7 19805571 19805571 0 0 Insertion 1 upstream_gene_variant HET FN2682-S Chr7 2315390 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g05190 leucine-rich repeat family protein, putative, expressed FN2682-S Chr7 26828512 26828513 0 0 Insertion 1 HET FN2682-S Chr7 26884706 26884730 0 0 Deletion 24 upstream_gene_variant HET FN2682-S Chr7 8233552 C-T 0 0 Single Base Substitution 0 HET FN2682-S Chr7 9154157 A-T 0 0 Single Base Substitution 0 HET FN2682-S Chr7 9154157 A-T 0 0 Single Base Substitution 0 INTRON HET FN2682-S Chr8 11637201 11637260 0 0 Deletion 59 HET FN2682-S Chr8 12220572 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g20350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2682-S Chr8 16263154 Chr6 15882910 0 Translocation 0 FN2682-S Chr8 16263154 Chr6 15882910 0 Translocation 0 LOC_Os06g27990 retrotransposon protein, putative, unclassified, expressed FN2682-S Chr8 1790796 1790799 0 0 Deletion 3 INTERGENIC HOMO FN2682-S Chr8 25143113 Chr2 24605943 0 Translocation 0 FN2682-S Chr8 26700653 26700655 0 0 Deletion 2 downstream_gene_variant HET FN2682-S Chr8 28263394 C-A 0 0 Single Base Substitution 0 Homo FN2682-S Chr8 28263394 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2682-S Chr8 3365193 A-G 0 0 Single Base Substitution 0 Homo FN2682-S Chr8 3365193 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2682-S Chr8 4331177 T-C 0 0 Single Base Substitution 0 Homo FN2682-S Chr8 4331177 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2682-S Chr8 8032297 8032301 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os08g13500 retrotransposon protein, putative, unclassified, expressed FN2682-S Chr8 8928502 Chr6 17497729 0 Translocation 0 FN2682-S Chr8 8928502 Chr6 17497729 0 Translocation 0 LOC_Os06g30310 alpha-glucan water dikinase, chloroplast precursor, putative, expressed FN2682-S Chr9 12792840 12792840 0 0 Insertion 1 upstream_gene_variant HET FN2682-S Chr9 19929206 Chr4 26648747 0 Translocation 0 LOC_Os04g45040 DEAD-box ATP-dependent RNA helicase, putative, expressed FN2682-S Chr9 19929206 Chr4 26648747 0 Translocation 0 LOC_Os09g33740 Zinc finger, ZZ type domain containing protein, expressed FN2682-S Chr9 339199 Chr5 11351917 0 Translocation 0 LOC_Os05g19530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2682-S Chr9 4753131 4753204 0 0 Deletion 73 upstream_gene_variant HET FN2682-S Chr9 5260299 5260300 0 0 Deletion 1 frameshift_variant HET LOC_Os09g09720 retrotransposon protein, putative, unclassified FN2682-S Chr9 8926244 8926245 0 0 Deletion 1 HET FN2682-S Chr9 8941257 Chr1 30237136 0 Translocation 0 FN2682-S Chr9 9706659 9706660 0 0 Deletion 1 frameshift_variant HET LOC_Os09g15880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2682-S Chr9 9735385 9735395 0 0 Deletion 10 upstream_gene_variant HET