FN2683-S-1 Chr1 10782854 10782870 0 0 Deletion 16 frameshift_variant HET LOC_Os01g19080 ligA, putative, expressed FN2683-S-1 Chr1 11376339 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr1 13479333 G-T 0 0 Single Base Substitution 0 INTRON HET FN2683-S-1 Chr1 13932806 13932807 0 0 Deletion 1 INTERGENIC HET FN2683-S-1 Chr1 15211887 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr1 18947170 18947176 0 0 Deletion 6 upstream_gene_variant HET FN2683-S-1 Chr1 2035816 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr1 20503460 20503460 0 0 Insertion 2 INTERGENIC HET FN2683-S-1 Chr1 33773067 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr1 35574975 C-A 0 0 Single Base Substitution 0 INTRON HET FN2683-S-1 Chr1 36594298 G-A 0 0 Single Base Substitution 0 INTRON HET FN2683-S-1 Chr10 14136587 14136588 0 0 Deletion 1 downstream_gene_variant HET FN2683-S-1 Chr10 19209068 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr10 557289 C-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HOMO FN2683-S-1 Chr10 6336022 6336029 0 0 Deletion 7 FRAME_SHIFT HET LOC_Os10g11454 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2683-S-1 Chr10 7955732 C-T 0 0 Single Base Substitution 0 INTRON HET FN2683-S-1 Chr11 28348523 28348524 0 0 Deletion 1 INTERGENIC HET FN2683-S-1 Chr11 28376916 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g47180 receptor-like protein kinase 2 precursor, putative, expressed FN2683-S-1 Chr11 29017066 29017066 0 0 Insertion 20 downstream_gene_variant HET FN2683-S-1 Chr11 4072253 4072254 0 0 Deletion 1 upstream_gene_variant HET FN2683-S-1 Chr12 11163132 11742186 0 0 Inversion 579054 FN2683-S-1 Chr12 21403209 21403209 0 0 Insertion 2 upstream_gene_variant HET FN2683-S-1 Chr12 8978935 9473711 0 0 Inversion 494776 FN2683-S-1 Chr12 8983452 Chr3 15237553 0 Translocation 0 FN2683-S-1 Chr12 8988724 Chr3 15237589 0 Translocation 0 FN2683-S-1 Chr12 9474001 9481000 0 0 Deletion 6999 LOC_Os12g16540 OsWAK124 - OsWAK receptor-like protein OsWAK-RLP, expressed FN2683-S-1 Chr12 9474001 9481000 0 0 Deletion 6999 LOC_Os12g16550 expressed protein FN2683-S-1 Chr12 9474001 9481000 0 0 Deletion 6999 LOC_Os12g22910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2683-S-1 Chr2 14041640 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr2 23207238 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr2 24053515 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr2 26711159 26711164 0 0 Deletion 5 INTRON HOMO FN2683-S-1 Chr2 3355055 3355067 0 0 Deletion 12 INTERGENIC HOMO FN2683-S-1 Chr3 13439291 13439294 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os03g23220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2683-S-1 Chr3 23665286 23665296 0 0 Deletion 10 FRAME_SHIFT HOMO LOC_Os03g42530 retrotransposon, putative, centromere-specific, expressed FN2683-S-1 Chr3 30834293 30834293 0 0 Insertion 28 upstream_gene_variant HET FN2683-S-1 Chr3 31409829 31409837 0 0 Deletion 8 INTERGENIC HET FN2683-S-1 Chr4 11356539 11356540 0 0 Deletion 1 INTERGENIC HET FN2683-S-1 Chr4 14071034 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr4 21935240 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2683-S-1 Chr4 26226628 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr4 26276766 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr4 26816332 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr4 3634200 Chr2 4744445 0 Translocation 0 FN2683-S-1 Chr4 4745373 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr4 8200486 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g14620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2683-S-1 Chr5 17328 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g00996 retrotransposon protein, putative, unclassified, expressed FN2683-S-1 Chr5 21378018 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g36080 transposon protein, putative, unclassified, expressed FN2683-S-1 Chr5 21902733 21902733 0 0 Insertion 5 INTERGENIC HET FN2683-S-1 Chr5 29615660 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2683-S-1 Chr5 9456321 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2683-S-1 Chr6 17882934 17882967 0 0 Deletion 33 INTERGENIC HOMO FN2683-S-1 Chr6 26199058 26199060 0 0 Deletion 2 INTERGENIC HET FN2683-S-1 Chr7 13840115 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2683-S-1 Chr7 416868 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr8 13121535 13121563 0 0 Deletion 28 upstream_gene_variant HET FN2683-S-1 Chr8 24890241 24890242 0 0 Deletion 1 INTRON HET FN2683-S-1 Chr9 12466085 12466093 0 0 Deletion 8 INTERGENIC HOMO FN2683-S-1 Chr9 15201658 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr9 20748524 20748525 0 0 Deletion 1 INTRON HET FN2683-S-1 Chr9 21767828 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2683-S-1 Chr9 3494189 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2683-S-1 Chr9 4740882 T-G 0 0 Single Base Substitution 0 INTERGENIC HET