FN2687-S Chr1 18713288 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr1 33628472 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr1 34890123 A-T 0 0 Single Base Substitution 0 INTRON HET FN2687-S Chr1 38688619 38688628 0 0 Deletion 9 CODON_DELETION HET LOC_Os01g66610 serine/threonine-protein kinase receptor precursor, putative, expressed FN2687-S Chr1 3966516 3966644 0 0 Inversion 0 FN2687-S Chr1 39713093 39713095 0 0 Deletion 2 HET FN2687-S Chr1 6098068 C-T 0 0 Single Base Substitution 0 Homo FN2687-S Chr1 6969175 C-T 0 0 Single Base Substitution 0 INTRON HET FN2687-S Chr1 741849 A-G 0 0 Single Base Substitution 0 HET FN2687-S Chr10 14333309 Chr9 10527948 0 Translocation 0 LOC_Os10g27200 expressed protein FN2687-S Chr10 15923379 15923385 0 0 Deletion 6 Homo FN2687-S Chr10 15923379 15923385 0 0 Deletion 6 UTR_5_PRIME HOMO FN2687-S Chr10 16401320 Chr2 19964529 0 Translocation 0 FN2687-S Chr10 16401320 Chr2 19964529 0 Translocation 0 LOC_Os02g33560 expressed protein FN2687-S Chr10 3120137 Chr1 23590110 0 Translocation 0 FN2687-S Chr10 5101993 5101999 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os10g09460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2687-S Chr10 8411033 G-T 0 0 Single Base Substitution 0 HET FN2687-S Chr10 9539218 C-A 0 0 Single Base Substitution 0 HET FN2687-S Chr10 9807979 9807979 0 0 Insertion 1 upstream_gene_variant HET FN2687-S Chr11 11867736 11867927 0 0 Inversion 0 FN2687-S Chr11 13356703 13356703 0 0 Insertion 1 frameshift_variant HET LOC_Os11g23200 retrotransposon protein, putative, unclassified, expressed FN2687-S Chr11 15401580 Chr4 18466158 0 Translocation 0 FN2687-S Chr11 15722872 15722873 0 0 Deletion 1 intron_variant HET FN2687-S Chr11 16493950 C-A 0 0 Single Base Substitution 0 HET FN2687-S Chr11 16493950 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr11 16493951 G-A 0 0 Single Base Substitution 0 HET FN2687-S Chr11 16493951 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr11 24994225 Chr4 17874176 0 Translocation 0 FN2687-S Chr11 25247462 A-G 0 0 Single Base Substitution 0 HET FN2687-S Chr11 27570450 Chr5 16490148 0 Translocation 0 FN2687-S Chr11 27761200 Chr7 26193088 0 Translocation 0 LOC_Os11g45890 expressed protein FN2687-S Chr11 27974802 27974826 0 0 Deletion 24 inframe_deletion HET LOC_Os11g46190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2687-S Chr11 29001206 G-T 0 0 Single Base Substitution 0 HET FN2687-S Chr11 29001206 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr11 6477110 A-T 0 0 Single Base Substitution 0 Homo FN2687-S Chr11 6477110 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2687-S Chr11 7414075 T-C 0 0 Single Base Substitution 0 HET FN2687-S Chr11 898529 Chr4 17915299 0 Translocation 0 FN2687-S Chr12 12916543 12916584 0 0 Deletion 41 downstream_gene_variant HET FN2687-S Chr12 13031360 A-T 0 0 Single Base Substitution 0 HET FN2687-S Chr12 13031360 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr12 17996187 17996188 0 0 Deletion 1 frameshift_variant HET LOC_Os12g30050 transposon protein, putative, unclassified, expressed FN2687-S Chr12 20535474 Chr1 34375468 0 Translocation 0 FN2687-S Chr12 21737271 Chr6 7862478 0 Translocation 0 FN2687-S Chr12 21737271 Chr6 7862478 0 Translocation 0 LOC_Os06g14100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2687-S Chr12 23541166 C-A 0 0 Single Base Substitution 0 HET FN2687-S Chr12 23748961 23748962 0 0 Deletion 1 downstream_gene_variant HET FN2687-S Chr12 24393553 Chr6 19207692 0 Translocation 0 FN2687-S Chr12 24449715 G-A 0 0 Single Base Substitution 0 Homo FN2687-S Chr12 24449715 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2687-S Chr12 5633839 5633865 0 0 Deletion 26 intergenic_region HET FN2687-S Chr12 6248354 Chr8 4190745 0 Translocation 0 FN2687-S Chr12 9893018 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2687-S Chr2 12259160 12259161 0 0 Deletion 1 upstream_gene_variant HET FN2687-S Chr2 14810340 14810340 0 0 Insertion 1 upstream_gene_variant HET FN2687-S Chr2 18092046 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g30380 expressed protein FN2687-S Chr2 23723930 Chr1 14275920 0 Translocation 0 LOC_Os02g39280 C2 domain containing protein, putative, expressed FN2687-S Chr2 23808168 23808168 0 0 Insertion 1 downstream_gene_variant HET FN2687-S Chr2 2403696 2403703 0 0 Deletion 7 Homo FN2687-S Chr2 30173658 30173659 0 0 Deletion 1 downstream_gene_variant HET FN2687-S Chr2 30212386 T-C 0 0 Single Base Substitution 0 HET FN2687-S Chr2 30212386 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr2 30782225 C-T 0 0 Single Base Substitution 0 HET FN2687-S Chr3 1028215 1028227 0 0 Deletion 12 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os03g02740 phospholipase D, putative, expressed FN2687-S Chr3 1028215 1028227 0 0 Deletion 12 disruptive_inframe_deletion Homo LOC_Os03g02740 phospholipase D, putative, expressed FN2687-S Chr3 12170095 C-T 0 0 Single Base Substitution 0 Homo FN2687-S Chr3 12170095 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2687-S Chr3 15780243 15780243 0 0 Insertion 2 INTRON HET FN2687-S Chr3 204355 588327 0 0 Inversion 0 LOC_Os03g01290 peptide transporter PTR2, putative, expressed FN2687-S Chr3 204355 588327 0 0 Inversion 383972 FN2687-S Chr3 204357 588329 0 0 Inversion 0 LOC_Os03g01290 peptide transporter PTR2, putative, expressed FN2687-S Chr3 204357 588329 0 0 Inversion 383972 FN2687-S Chr3 21391561 21391568 0 0 Deletion 7 Homo FN2687-S Chr3 21391561 21391568 0 0 Deletion 7 INTERGENIC HOMO FN2687-S Chr3 2648685 2648706 0 0 Deletion 21 INTERGENIC HET FN2687-S Chr3 33842319 33842326 0 0 Deletion 7 INTERGENIC HET FN2687-S Chr3 3707272 3707273 0 0 Deletion 1 HET FN2687-S Chr3 614294 614296 0 0 Deletion 2 UTR_3_PRIME HET FN2687-S Chr3 6473224 T-C 0 0 Single Base Substitution 0 HET FN2687-S Chr3 6473224 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2687-S Chr4 12343611 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g21790 OsWAK34 - OsWAK receptor-like protein kinase, expressed FN2687-S Chr4 13834097 T-C 0 0 Single Base Substitution 0 HET FN2687-S Chr4 15182299 15182300 0 0 Deletion 1 HET FN2687-S Chr4 16551540 C-T 0 0 Single Base Substitution 0 HET FN2687-S Chr4 16551540 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr4 20033703 A-G 0 0 Single Base Substitution 0 HET FN2687-S Chr4 20033703 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr4 20033712 G-A 0 0 Single Base Substitution 0 HET FN2687-S Chr4 20033712 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr4 20478519 Chr3 26496416 0 Translocation 0 FN2687-S Chr4 27923067 G-T 0 0 Single Base Substitution 0 HET FN2687-S Chr4 27923067 G-T 0 0 Single Base Substitution 0 INTRON HET FN2687-S Chr4 5790280 C-T 0 0 Single Base Substitution 0 HET FN2687-S Chr5 14297594 G-T 0 0 Single Base Substitution 0 HET FN2687-S Chr5 14980319 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g25750 retrotransposon protein, putative, unclassified, expressed FN2687-S Chr5 20768500 G-A 0 0 Single Base Substitution 0 HET FN2687-S Chr5 21101966 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr5 2289603 2289603 0 0 Insertion 8 intergenic_region HET FN2687-S Chr5 22941557 22941561 0 0 Deletion 4 Homo FN2687-S Chr5 22941557 22941561 0 0 Deletion 4 INTERGENIC HOMO FN2687-S Chr5 26587739 26587740 0 0 Deletion 1 Homo FN2687-S Chr5 26587739 26587740 0 0 Deletion 1 INTRON HOMO FN2687-S Chr5 26693302 26693303 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os05g46030 myosin head family protein, expressed FN2687-S Chr5 26693302 26693303 0 0 Deletion 1 frameshift_variant HET LOC_Os05g46030 myosin head family protein, expressed FN2687-S Chr5 27889063 T-G 0 0 Single Base Substitution 0 Homo FN2687-S Chr5 27889063 T-G 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HOMO FN2687-S Chr5 3735695 T-A 0 0 Single Base Substitution 0 HET FN2687-S Chr5 3735695 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr5 4292257 Chr4 13415270 0 Translocation 0 LOC_Os04g23470 transposon protein, putative, unclassified, expressed FN2687-S Chr5 4292257 Chr4 13415270 0 Translocation 0 LOC_Os05g07920 transposon protein, putative, unclassified, expressed FN2687-S Chr6 16817203 Chr1 29886717 0 Translocation 0 FN2687-S Chr6 17764103 17764104 0 0 Deletion 1 intron_variant HET FN2687-S Chr6 18884707 Chr5 5645992 0 Translocation 0 LOC_Os05g10340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2687-S Chr6 22827900 Chr5 15579833 0 Translocation 0 FN2687-S Chr6 4154261 A-T 0 0 Single Base Substitution 0 HET FN2687-S Chr6 4154261 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr6 4876222 G-T 0 0 Single Base Substitution 0 INTRON HET FN2687-S Chr6 5888138 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr7 11293103 C-T 0 0 Single Base Substitution 0 HET FN2687-S Chr7 11816198 11816199 0 0 Deletion 1 upstream_gene_variant HET FN2687-S Chr7 14901434 14901435 0 0 Insertion 1 HET FN2687-S Chr7 18095552 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g30580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2687-S Chr7 18095553 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g30580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2687-S Chr7 18963511 G-C 0 0 Single Base Substitution 0 HET FN2687-S Chr7 18963511 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr7 19153135 C-T 0 0 Single Base Substitution 0 HET FN2687-S Chr7 19416460 Chr1 34821287 0 Translocation 0 FN2687-S Chr7 24198867 C-T 0 0 Single Base Substitution 0 HET FN2687-S Chr7 25003273 A-T 0 0 Single Base Substitution 0 HET FN2687-S Chr7 25285592 Chr2 13402391 0 Translocation 0 FN2687-S Chr7 27925150 C-A 0 0 Single Base Substitution 0 HET FN2687-S Chr7 27925150 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr7 28176929 28176930 0 0 Deletion 1 downstream_gene_variant HET FN2687-S Chr7 29086688 29086689 0 0 Deletion 1 HET FN2687-S Chr7 5395845 5395861 0 0 Deletion 16 frameshift_variant HET LOC_Os07g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2687-S Chr7 6069413 A-G 0 0 Single Base Substitution 0 HET FN2687-S Chr7 6069413 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr8 13976246 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr8 1399006 A-T 0 0 Single Base Substitution 0 HET FN2687-S Chr8 24683903 Chr1 39127474 0 Translocation 0 FN2687-S Chr8 26169272 G-C 0 0 Single Base Substitution 0 Homo FN2687-S Chr8 26169272 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2687-S Chr8 26716485 26716485 0 0 Insertion 2 INTERGENIC HET FN2687-S Chr8 26716485 26716487 0 0 Insertion 2 HET FN2687-S Chr8 26906514 Chr3 25348842 0 Translocation 0 LOC_Os08g42570 plant protein of unknown function domain containing protein, expressed FN2687-S Chr8 7272318 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr9 10443317 10443318 0 0 Deletion 1 upstream_gene_variant HET FN2687-S Chr9 11748998 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g19650 3-ketoacyl-CoA synthase precursor, putative, expressed FN2687-S Chr9 12680848 12680849 0 0 Deletion 1 HET FN2687-S Chr9 12680848 12680849 0 0 Deletion 1 INTRON HOMO FN2687-S Chr9 1269806 Chr3 18058077 0 Translocation 0 FN2687-S Chr9 13461928 13461929 0 0 Deletion 1 Homo FN2687-S Chr9 13461928 13461929 0 0 Deletion 1 INTERGENIC HOMO FN2687-S Chr9 13833451 G-A 0 0 Single Base Substitution 0 Homo FN2687-S Chr9 13833451 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2687-S Chr9 16824334 G-T 0 0 Single Base Substitution 0 Homo FN2687-S Chr9 16824334 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2687-S Chr9 17058830 G-A 0 0 Single Base Substitution 0 HET FN2687-S Chr9 19130043 G-T 0 0 Single Base Substitution 0 HET FN2687-S Chr9 7333416 T-G 0 0 Single Base Substitution 0 HET FN2687-S Chr9 7333416 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2687-S Chr9 8276632 C-T 0 0 Single Base Substitution 0 HET