FN2696-S-1 Chr1 13907033 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr1 15948543 15948543 0 0 Insertion 8 upstream_gene_variant HET FN2696-S-1 Chr1 18899152 18899153 0 0 Deletion 1 upstream_gene_variant HET FN2696-S-1 Chr1 20113792 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2696-S-1 Chr1 22507806 22507807 0 0 Deletion 1 upstream_gene_variant HET FN2696-S-1 Chr1 28378131 28378133 0 0 Deletion 2 INTRON HET FN2696-S-1 Chr1 34049175 34049176 0 0 Deletion 1 upstream_gene_variant HET FN2696-S-1 Chr1 38039606 38039620 0 0 Deletion 14 INTERGENIC HOMO FN2696-S-1 Chr1 42111458 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2696-S-1 Chr1 5778802 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr10 12101135 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr10 13147824 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr10 15261004 15261007 0 0 Deletion 3 INTERGENIC HOMO FN2696-S-1 Chr10 16465959 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr10 21394825 21394828 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os10g39950 viral A-type inclusion protein repeat containing protein, expressed FN2696-S-1 Chr10 5184816 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr10 7352155 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr10 9901085 9901087 0 0 Deletion 2 INTERGENIC HET FN2696-S-1 Chr11 10769001 10795000 0 0 Deletion 25999 LOC_Os11g18947 zinc finger, C3HC4 type domain containing protein, expressed FN2696-S-1 Chr11 10769001 10795000 0 0 Deletion 25999 LOC_Os11g25700 tropinone reductase, putative, expressed FN2696-S-1 Chr11 10923621 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr11 11151639 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g19380 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr11 16486271 16486274 0 0 Deletion 3 INTERGENIC HET FN2696-S-1 Chr11 18371658 18371674 0 0 Deletion 16 INTRON HET FN2696-S-1 Chr11 18635179 T-C 0 0 Single Base Substitution 0 INTRON HET FN2696-S-1 Chr11 21516732 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr11 22839130 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2696-S-1 Chr11 23523805 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2696-S-1 Chr11 26760605 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr11 3759779 3759786 0 0 Deletion 7 FRAME_SHIFT HET LOC_Os11g07460 TCP family transcription factor, putative, expressed FN2696-S-1 Chr11 5959093 6671300 0 0 Inversion 712207 FN2696-S-1 Chr11 9043345 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr12 1057562 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2696-S-1 Chr12 13152117 13152117 0 0 Insertion 5 upstream_gene_variant HET FN2696-S-1 Chr12 13438572 13438589 0 0 Deletion 17 INTERGENIC HET FN2696-S-1 Chr12 19083255 19083256 0 0 Deletion 1 upstream_gene_variant HET FN2696-S-1 Chr12 19323116 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr12 22229058 22229058 0 0 Insertion 12 upstream_gene_variant HET FN2696-S-1 Chr12 23779575 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2696-S-1 Chr12 23980895 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g38990 transposon protein, putative, unclassified, expressed FN2696-S-1 Chr12 26189036 26189036 0 0 Insertion 14 downstream_gene_variant HET FN2696-S-1 Chr12 9915303 9954710 0 0 Inversion 39407 LOC_Os12g17320 polyprenyl synthetase, putative, expressed FN2696-S-1 Chr12 9915304 9954712 0 0 Inversion 39408 LOC_Os12g17320 polyprenyl synthetase, putative, expressed FN2696-S-1 Chr2 10926504 10926508 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os02g18730 retrotransposon protein, putative, LINE subclass, expressed FN2696-S-1 Chr2 15397253 15397253 0 0 Insertion 34 upstream_gene_variant HET FN2696-S-1 Chr2 17543920 17543922 0 0 Deletion 2 upstream_gene_variant HET FN2696-S-1 Chr2 19065392 19065392 0 0 Insertion 1 upstream_gene_variant HET FN2696-S-1 Chr2 26441635 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2696-S-1 Chr2 31325573 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2696-S-1 Chr2 32487529 32487529 0 0 Insertion 2 INTERGENIC HET FN2696-S-1 Chr2 33395675 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr2 34141028 34141028 0 0 Insertion 2 downstream_gene_variant FN2696-S-1 Chr2 6243361 6243363 0 0 Deletion 2 INTERGENIC HET FN2696-S-1 Chr2 7852059 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g14300 expressed protein FN2696-S-1 Chr3 1254303 1254395 0 0 Deletion 92 downstream_gene_variant HET FN2696-S-1 Chr3 12881950 12881950 0 0 Insertion 3 INTERGENIC HET FN2696-S-1 Chr3 19403080 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr3 19673080 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr3 22468673 22468714 0 0 Deletion 41 intron_variant HET FN2696-S-1 Chr3 32726847 C-T 0 0 Single Base Substitution 0 INTRON HET FN2696-S-1 Chr3 35894073 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2696-S-1 Chr3 6573004 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr4 16753460 16753461 0 0 Deletion 1 INTERGENIC HOMO FN2696-S-1 Chr4 17311686 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2696-S-1 Chr4 20980275 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr4 21174321 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr4 21834372 21834373 0 0 Deletion 1 INTERGENIC HET FN2696-S-1 Chr4 23197288 23197290 0 0 Deletion 2 INTERGENIC HET FN2696-S-1 Chr4 24208331 A-G 0 0 Single Base Substitution 0 INTRON HET FN2696-S-1 Chr4 2701471 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr4 28350242 28350244 0 0 Deletion 2 INTERGENIC HET FN2696-S-1 Chr4 33123656 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2696-S-1 Chr4 7184219 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g13030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2696-S-1 Chr4 9402747 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr5 2512260 2512277 0 0 Deletion 17 INTRON HOMO FN2696-S-1 Chr5 26173739 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr6 17232918 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g29920 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr6 28718710 28718716 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os06g47380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2696-S-1 Chr6 5146983 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr6 61640 61642 0 0 Deletion 2 intergenic_region HET FN2696-S-1 Chr6 6250718 C-T 0 0 Single Base Substitution 0 START_GAINED HET FN2696-S-1 Chr6 6382052 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13010 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13020 DNA polymerase lambda, putative, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13030 OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13040 glycosyl hydrolases family 16, putative, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13050 peroxidase family protein, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13060 heat shock protein DnaJ, putative, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13070 hhH-GPD superfamily base excision DNA repair protein, putative, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13080 spotted leaf 11, putative, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13090 armadillo/beta-catenin repeat family protein, putative, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13100 CREG1 precursor, putative, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13110 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13120 expressed protein FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13130 expressed protein FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13140 WD domain, G-beta repeat domain containing protein, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13150 hypothetical protein FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13160 viral-response family protein, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13170 expressed protein FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13180 metalloendoproteinase 1 precursor, putative, expressed FN2696-S-1 Chr6 7122001 7225000 0 0 Deletion 102999 LOC_Os06g13470 SAM dependent carboxyl methyltransferase, putative, expressed FN2696-S-1 Chr6 7315505 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr6 7420001 7470000 0 0 Deletion 49999 LOC_Os06g13480 expressed protein FN2696-S-1 Chr6 7420001 7470000 0 0 Deletion 49999 LOC_Os06g13490 SAM dependent carboxyl methyltransferase domain containing protein, expressed FN2696-S-1 Chr6 7420001 7470000 0 0 Deletion 49999 LOC_Os06g13500 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2696-S-1 Chr6 7420001 7470000 0 0 Deletion 49999 LOC_Os06g13510 SAM dependent carboxyl methyltransferase family protein, putative FN2696-S-1 Chr6 7420001 7470000 0 0 Deletion 49999 LOC_Os06g13520 SAM dependent carboxyl methyltransferase domain containing protein, expressed FN2696-S-1 Chr6 7420001 7470000 0 0 Deletion 49999 LOC_Os06g13530 benzoate carboxyl methyltransferase, putative, expressed FN2696-S-1 Chr6 7420001 7470000 0 0 Deletion 49999 LOC_Os06g13540 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr6 7420001 7470000 0 0 Deletion 49999 LOC_Os06g30590 expressed protein FN2696-S-1 Chr6 9402720 9403593 0 0 Inversion 873 FN2696-S-1 Chr6 9402854 9403593 0 0 Inversion 739 FN2696-S-1 Chr7 10392569 10656378 0 0 Inversion 263809 FN2696-S-1 Chr7 10392569 10656384 0 0 Inversion 263815 FN2696-S-1 Chr7 11895796 11895796 0 0 Insertion 8 upstream_gene_variant HET FN2696-S-1 Chr7 17999662 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr7 19574853 C-A 0 0 Single Base Substitution 0 INTRON HET FN2696-S-1 Chr7 19822489 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr7 23019879 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g38320 retrotransposon protein, putative, Ty3-gypsy subclass FN2696-S-1 Chr7 24781804 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr7 26517098 26517098 0 0 Insertion 2 UTR_3_PRIME HET FN2696-S-1 Chr7 27542539 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr7 28111842 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13010 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13020 SWIM zinc finger family protein, putative FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13030 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13040 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13050 hypothetical protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13070 transposon protein, putative, CACTA, En/Spm sub-class FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13090 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13100 DNA binding protein, putative, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13140 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13160 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13170 AP2 domain containing protein, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13180 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13190 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13200 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13210 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13220 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13230 eukaryotic initiation factor 5A hypusine, DNA-binding OB fold family protein, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13234 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13240 hypothetical protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13260 dof zinc finger domain containing protein, putative, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13270 SNF7 domain containing protein, putative, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13280 RNA recognition motif containing protein, putative, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13310 RALFL10 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13319 hypothetical protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13330 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13340 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13350 retrotransposon protein, putative, unclassified, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13360 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13370 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13380 RALFL11 - Rapid ALkalinization Factor RALF family protein precursor, putative FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13390 transposon protein, putative, unclassified, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13420 retrotransposon protein, putative, Ty3-gypsy subclass FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13440 RALFL12 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13450 RALFL13 - Rapid ALkalinization Factor RALF family protein precursor, expressed FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13460 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13480 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13490 expressed protein FN2696-S-1 Chr7 7460001 7737000 0 0 Deletion 276999 LOC_Os07g13500 expressed protein FN2696-S-1 Chr7 977935 977935 0 0 Insertion 12 INTERGENIC HOMO FN2696-S-1 Chr8 12053810 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2696-S-1 Chr8 27497074 27497076 0 0 Deletion 2 INTERGENIC HET FN2696-S-1 Chr8 392592 Chr6 9402844 0 Translocation 0 FN2696-S-1 Chr8 392593 Chr6 9402735 0 Translocation 0 FN2696-S-1 Chr8 5847688 T-A 0 0 Single Base Substitution 0 INTRON HET FN2696-S-1 Chr9 11044317 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2696-S-1 Chr9 14289727 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2696-S-1 Chr9 397612 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g01560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed