FN2703-S-1 Chr1 15117764 15117765 0 0 Deletion 1 upstream_gene_variant HET FN2703-S-1 Chr1 16925804 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr1 8205028 8205038 0 0 Deletion 10 INTRON HOMO FN2703-S-1 Chr10 701899 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g02120 retrotransposon protein, putative, unclassified, expressed FN2703-S-1 Chr11 13135299 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2703-S-1 Chr11 13951831 13951838 0 0 Deletion 7 INTERGENIC HET FN2703-S-1 Chr11 15922963 15922966 0 0 Deletion 3 inframe_deletion HET LOC_Os11g27650 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2703-S-1 Chr11 17027484 17027484 0 0 Insertion 3 upstream_gene_variant HET FN2703-S-1 Chr11 17184190 17184193 0 0 Deletion 3 upstream_gene_variant HET FN2703-S-1 Chr11 17738803 17738803 0 0 Insertion 9 downstream_gene_variant HET FN2703-S-1 Chr12 10701689 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g18510 expressed protein FN2703-S-1 Chr12 13997081 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr12 1723128 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g04110 pentatricopeptide, putative, expressed FN2703-S-1 Chr12 23071238 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr12 24308987 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr12 27316818 27316818 0 0 Insertion 20 3_prime_UTR_variant HET FN2703-S-1 Chr12 6026251 6026251 0 0 Insertion 14 upstream_gene_variant HET FN2703-S-1 Chr2 10355001 10394000 0 0 Deletion 38999 LOC_Os02g17890 expressed protein FN2703-S-1 Chr2 10355001 10394000 0 0 Deletion 38999 LOC_Os02g17900 glycosyl hydrolases family 16, putative, expressed FN2703-S-1 Chr2 10355001 10394000 0 0 Deletion 38999 LOC_Os02g17910 CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed FN2703-S-1 Chr2 10355001 10394000 0 0 Deletion 38999 LOC_Os02g17920 glyoxalase family protein, putative, expressed FN2703-S-1 Chr2 10355001 10394000 0 0 Deletion 38999 LOC_Os02g17930 expressed protein FN2703-S-1 Chr2 10355001 10394000 0 0 Deletion 38999 LOC_Os02g17940 leucoanthocyanidin dioxygenase, putative, expressed FN2703-S-1 Chr2 10355001 10394000 0 0 Deletion 38999 LOC_Os02g19140 seven in absentia protein family domain containing protein, expressed FN2703-S-1 Chr2 23675380 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2703-S-1 Chr2 31938888 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2703-S-1 Chr2 3608571 3608572 0 0 Deletion 1 INTRON HET FN2703-S-1 Chr2 7384544 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr2 7597207 7597208 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os02g13950 NHL repeat-containing protein, putative, expressed FN2703-S-1 Chr2 7982424 7982425 0 0 Deletion 1 INTERGENIC HET FN2703-S-1 Chr3 14160602 14160613 0 0 Deletion 11 INTERGENIC HOMO FN2703-S-1 Chr3 19353980 C-T 0 0 Single Base Substitution 0 INTRON HET FN2703-S-1 Chr4 12394513 12394516 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os04g21880 expressed protein FN2703-S-1 Chr4 1612321 1612321 0 0 Insertion 26 upstream_gene_variant HET FN2703-S-1 Chr4 23298544 23298546 0 0 Deletion 2 INTERGENIC HET FN2703-S-1 Chr4 34823947 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2703-S-1 Chr4 9830248 9830249 0 0 Deletion 1 frameshift_variant HET LOC_Os04g17890 retrotransposon protein, putative, unclassified, expressed FN2703-S-1 Chr5 25455100 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g43780 ESP1, putative, expressed FN2703-S-1 Chr5 6354928 6354928 0 0 Insertion 33 downstream_gene_variant HET FN2703-S-1 Chr5 7022961 7022961 0 0 Insertion 12 intergenic_region HET FN2703-S-1 Chr6 216931 T-A 0 0 Single Base Substitution 0 INTRON HET FN2703-S-1 Chr6 23778565 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2703-S-1 Chr6 26232667 Chr2 5607366 0 Translocation 0 LOC_Os06g43610 formamidopyrimidine-DNA glycosylase, putative, expressed FN2703-S-1 Chr6 26232983 Chr2 5607338 0 Translocation 0 FN2703-S-1 Chr6 5907892 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr6 599623 Chr2 10358457 0 Translocation 0 FN2703-S-1 Chr6 6937834 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2703-S-1 Chr6 7261610 7751677 0 0 Inversion 490067 FN2703-S-1 Chr6 7261622 7751688 0 0 Inversion 490066 FN2703-S-1 Chr7 13420849 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr7 24356109 24356113 0 0 Deletion 4 INTRON HET FN2703-S-1 Chr7 26568546 C-T 0 0 Single Base Substitution 0 INTRON HET FN2703-S-1 Chr7 27218674 T-C 0 0 Single Base Substitution 0 INTRON HET FN2703-S-1 Chr7 6709834 C-T 0 0 Single Base Substitution 0 INTRON HET FN2703-S-1 Chr8 13532362 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr8 15064370 15064370 0 0 Insertion 26 frameshift_variant HET LOC_Os08g24880 EDM2, putative, expressed FN2703-S-1 Chr8 19690453 Chr6 13904217 0 Translocation 0 FN2703-S-1 Chr8 2219805 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2703-S-1 Chr8 7269088 7269088 0 0 Insertion 1 upstream_gene_variant HET FN2703-S-1 Chr9 12710852 12710854 0 0 Deletion 2 INTERGENIC HOMO FN2703-S-1 Chr9 14113331 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g23740 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed FN2703-S-1 Chr9 14749538 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr9 15394814 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2703-S-1 Chr9 22619250 22619264 0 0 Deletion 14 FRAME_SHIFT HOMO LOC_Os09g39330 retrotransposon protein, putative, unclassified, expressed FN2703-S-1 Chr9 22860772 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2703-S-1 Chr9 8555390 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g14470 retrotransposon protein, putative, unclassified, expressed FN2703-S-1 Chr9 8555391 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g14470 retrotransposon protein, putative, unclassified, expressed