FN2704-S Chr1 21801636 21801637 0 0 Insertion 1 HET FN2704-S Chr1 23653042 G-A 0 0 Single Base Substitution 0 Homo FN2704-S Chr1 23653042 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2704-S Chr1 24884452 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr1 34490138 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr1 35562581 35562582 0 0 Deletion 1 HET FN2704-S Chr1 35562581 35562582 0 0 Deletion 1 INTERGENIC HET FN2704-S Chr1 38487470 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr1 38799847 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr1 38799847 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr1 40085038 T-C 0 0 Single Base Substitution 0 HET FN2704-S Chr1 40852581 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g70540 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr1 42526924 42526927 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os01g73370 S-locus lectin protein kinase family protein, putative, expressed FN2704-S Chr1 42586031 42586037 0 0 Deletion 6 UTR_5_PRIME HET FN2704-S Chr1 793267 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g02450 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr10 12689208 T-A 0 0 Single Base Substitution 0 Homo FN2704-S Chr10 12689208 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2704-S Chr10 14212817 14212818 0 0 Deletion 1 intergenic_region HET FN2704-S Chr10 15468601 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2704-S Chr10 15795952 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr10 19721746 19721747 0 0 Deletion 1 INTERGENIC HET FN2704-S Chr10 4808925 4808933 0 0 Deletion 8 downstream_gene_variant HET FN2704-S Chr10 5149237 Chr4 3713485 0 Translocation 0 FN2704-S Chr11 11746296 G-T 0 0 Single Base Substitution 0 INTRON HET FN2704-S Chr11 11802817 11802819 0 0 Deletion 2 INTERGENIC HET FN2704-S Chr11 12300301 12300465 0 0 Deletion 164 intergenic_region HET FN2704-S Chr11 13233641 13233643 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os11g23010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2704-S Chr11 14094682 14094693 0 0 Deletion 11 INTERGENIC HET FN2704-S Chr11 14332209 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr11 16566655 16566666 0 0 Deletion 11 INTERGENIC HET FN2704-S Chr11 16687526 16687527 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os11g28790 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr11 17941434 17941439 0 0 Deletion 5 INTERGENIC HET FN2704-S Chr11 23873974 23873976 0 0 Deletion 2 INTERGENIC HET FN2704-S Chr11 5212632 5212636 0 0 Deletion 4 frameshift_variant HET LOC_Os11g09760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2704-S Chr11 5566720 5566721 0 0 Deletion 1 INTRON HET FN2704-S Chr11 6182169 A-G 0 0 Single Base Substitution 0 HET FN2704-S Chr11 6182169 A-G 0 0 Single Base Substitution 0 INTRON HET FN2704-S Chr12 10662318 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr12 11575371 11575372 0 0 Insertion 1 HET FN2704-S Chr12 12617631 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr12 16446401 Chr7 11777249 0 Translocation 0 LOC_Os12g27900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2704-S Chr12 17053613 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g28850 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr12 17467227 17467227 0 0 Insertion 2 INTERGENIC HET FN2704-S Chr12 19791551 T-A 0 0 Single Base Substitution 0 HET FN2704-S Chr12 19791551 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr12 20492351 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr12 21305855 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g35000 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr12 21509476 C-A 0 0 Single Base Substitution 0 HET FN2704-S Chr12 21733136 21733145 0 0 Deletion 9 HET FN2704-S Chr12 21733136 21733145 0 0 Deletion 9 INTERGENIC HET FN2704-S Chr12 2335196 2335205 0 0 Deletion 9 INTERGENIC HET FN2704-S Chr12 24332920 Chr3 20216552 0 Translocation 0 FN2704-S Chr12 3714341 3714346 0 0 Deletion 5 INTERGENIC HET FN2704-S Chr12 6410317 6410318 0 0 Deletion 1 downstream_gene_variant HET FN2704-S Chr12 7015107 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr2 12893095 G-A 0 0 Single Base Substitution 0 HET FN2704-S Chr2 12893095 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr2 12893096 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr2 12893096 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr2 15911341 15911341 0 0 Insertion 2 INTRON HET FN2704-S Chr2 15911341 15911343 0 0 Insertion 2 HET FN2704-S Chr2 16415375 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g27710 disease resistance protein, putative, expressed FN2704-S Chr2 19774202 19774203 0 0 Insertion 1 HET FN2704-S Chr2 28127867 28128197 0 0 Inversion 330 LOC_Os02g46150 GAMM1 protein-like, putative, expressed FN2704-S Chr2 6550729 T-C 0 0 Single Base Substitution 0 Homo FN2704-S Chr2 6550729 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2704-S Chr2 886001 894000 0 0 Deletion 7999 LOC_Os02g02490 phytosulfokine receptor precursor, putative, expressed FN2704-S Chr2 886001 894000 0 0 Deletion 7999 LOC_Os02g02500 remorin family protein, putative, expressed FN2704-S Chr2 886001 894000 0 0 Deletion 7999 LOC_Os02g03350 transposon protein, putative, unclassified, expressed FN2704-S Chr3 10416501 10416508 0 0 Deletion 7 HET FN2704-S Chr3 10416501 10416508 0 0 Deletion 7 INTERGENIC HET FN2704-S Chr3 14567552 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g25500 cytochrome P450 72A1, putative, expressed FN2704-S Chr3 18763386 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g32780 expressed protein FN2704-S Chr3 19532254 A-G 0 0 Single Base Substitution 0 HET FN2704-S Chr3 19532254 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr3 23776295 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g42690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2704-S Chr3 26675691 C-T 0 0 Single Base Substitution 0 Homo FN2704-S Chr3 26675691 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2704-S Chr3 33882604 34273852 0 0 Inversion 0 FN2704-S Chr3 33882604 34273852 0 0 Inversion 391248 FN2704-S Chr3 6023055 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr3 6899654 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr3 6899654 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr4 1234456 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr4 1234456 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr4 12421217 C-T 0 0 Single Base Substitution 0 Homo FN2704-S Chr4 12421217 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2704-S Chr4 12679842 G-A 0 0 Single Base Substitution 0 HET FN2704-S Chr4 14661769 14661772 0 0 Deletion 3 Homo FN2704-S Chr4 14661769 14661772 0 0 Deletion 3 INTERGENIC HOMO FN2704-S Chr4 22468058 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g37790 expressed protein FN2704-S Chr4 23624265 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr4 2377529 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g04930 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr4 463253 T-C 0 0 Single Base Substitution 0 HET FN2704-S Chr4 463253 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr4 6198369 6198372 0 0 Deletion 3 CODON_DELETION HOMO LOC_Os04g11350 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 14045367 G-A 0 0 Single Base Substitution 0 HET FN2704-S Chr5 14749903 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g25390 tyrosine protein kinase domain containing protein, putative, expressed FN2704-S Chr5 16249001 16273000 0 0 Deletion 23999 LOC_Os05g27880 BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed FN2704-S Chr5 16249001 16273000 0 0 Deletion 23999 LOC_Os05g28200 prenyltransferase, putative, expressed FN2704-S Chr5 16251355 16296539 0 0 Inversion 0 FN2704-S Chr5 16251355 16296539 0 0 Inversion 0 LOC_Os05g27920 phox domain-containing protein, putative, expressed FN2704-S Chr5 16251355 16296539 0 0 Inversion 45184 LOC_Os05g27920 phox domain-containing protein, putative, expressed FN2704-S Chr5 16254001 16273000 0 0 Deletion 18999 LOC_Os05g27870 expressed protein FN2704-S Chr5 16254001 16273000 0 0 Deletion 18999 LOC_Os05g27880 BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed FN2704-S Chr5 16271253 16296627 0 0 Inversion 0 LOC_Os05g27880 BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed FN2704-S Chr5 16271253 16296627 0 0 Inversion 0 LOC_Os05g27920 phox domain-containing protein, putative, expressed FN2704-S Chr5 16271253 16296627 0 0 Inversion 25374 LOC_Os05g27880 BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed FN2704-S Chr5 16271253 16296627 0 0 Inversion 25374 LOC_Os05g27920 phox domain-containing protein, putative, expressed FN2704-S Chr5 16307454 T-C 0 0 Single Base Substitution 0 HET FN2704-S Chr5 16307454 T-C 0 0 Single Base Substitution 0 INTRON HET FN2704-S Chr5 16328490 G-A 0 0 Single Base Substitution 0 HET FN2704-S Chr5 16328490 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr5 16328495 G-A 0 0 Single Base Substitution 0 HET FN2704-S Chr5 16328495 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr5 16328499 G-A 0 0 Single Base Substitution 0 HET FN2704-S Chr5 16328499 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr5 17504280 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr5 18706226 18706251 0 0 Deletion 25 INTERGENIC HET FN2704-S Chr5 25173778 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr5 4517990 4517996 0 0 Deletion 6 INTRON HET FN2704-S Chr5 5773931 T-A 0 0 Single Base Substitution 0 HET FN2704-S Chr5 5864684 G-A 0 0 Single Base Substitution 0 HET FN2704-S Chr5 5864684 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g11920 hypothetical protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g11930 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g11940 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g11950 GDSL-like lipase/acylhydrolase, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g11960 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g11970 GDSL-like lipase/acylhydrolase, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g11980 timeless protein, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g11990 TTL1, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12000 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12010 hypothetical protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12020 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12030 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12040 cytochrome P450 51, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12050 retrotransposon protein, putative, unclassified FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12060 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12070 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12080 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12090 VQ domain containing protein, putative FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12094 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12100 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12110 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12120 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12130 EMB2261, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12140 Leucine Rich Repeat family protein, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12150 endoglucanase precursor, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12160 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12170 plant-specific domain TIGR01589 family protein, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12180 chalcone synthase, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12190 chalcone synthase, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12200 transposon protein, putative, CACTA, En/Spm sub-class FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12210 chalcone synthase, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12220 hypothetical protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12230 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12240 chalcone synthase, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12250 hypothetical protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12260 CAPIP1, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12270 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12280 clumping factor A precursor, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12290 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12300 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12310 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12320 nodulin MtN3 family protein, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12330 uncharacterized protein KIAA1310, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12340 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12350 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12360 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12370 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12380 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12390 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12400 BURP domain containing protein, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12410 BURP domain containing protein, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12420 retrotransposon protein, putative, Ty3-gypsy subclass FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12430 hypothetical protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12440 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12450 hydroquinone glucosyltransferase, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12460 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12474 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12481 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12490 transporter-related, putative, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12500 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12510 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12540 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12550 retrotransposon, putative, centromere-specific, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12560 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12570 NB-ARC domain containing protein, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12580 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12590 retrotransposon protein, putative, unclassified FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12600 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12620 retrotransposon, putative, centromere-specific, expressed FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12630 expressed protein FN2704-S Chr5 6779001 7262000 0 0 Deletion 482999 LOC_Os05g12640 BURP domain containing protein, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g11910 GDSL-like lipase/acylhydrolase, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g11920 hypothetical protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g11930 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g11940 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g11950 GDSL-like lipase/acylhydrolase, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g11960 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g11970 GDSL-like lipase/acylhydrolase, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g11980 timeless protein, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g11990 TTL1, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12000 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12010 hypothetical protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12020 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12030 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12040 cytochrome P450 51, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12050 retrotransposon protein, putative, unclassified FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12060 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12070 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12080 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12090 VQ domain containing protein, putative FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12094 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12100 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12110 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12120 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12130 EMB2261, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12140 Leucine Rich Repeat family protein, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12150 endoglucanase precursor, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12160 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12170 plant-specific domain TIGR01589 family protein, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12180 chalcone synthase, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12190 chalcone synthase, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12200 transposon protein, putative, CACTA, En/Spm sub-class FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12210 chalcone synthase, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12220 hypothetical protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12230 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12240 chalcone synthase, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12250 hypothetical protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12260 CAPIP1, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12270 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12280 clumping factor A precursor, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12290 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12300 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12310 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12320 nodulin MtN3 family protein, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12330 uncharacterized protein KIAA1310, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12340 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12350 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12360 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12370 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12380 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12390 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12400 BURP domain containing protein, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12410 BURP domain containing protein, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12420 retrotransposon protein, putative, Ty3-gypsy subclass FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12430 hypothetical protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12440 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12450 hydroquinone glucosyltransferase, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12460 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12474 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12481 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12490 transporter-related, putative, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12500 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12510 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12540 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12550 retrotransposon, putative, centromere-specific, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12560 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12570 NB-ARC domain containing protein, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12580 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12590 retrotransposon protein, putative, unclassified FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12600 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12620 retrotransposon, putative, centromere-specific, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12630 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12640 BURP domain containing protein, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12660 hypothetical protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12670 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12680 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12700 retrotransposon protein, putative, unclassified FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12710 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12720 conserved hypothetical protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12730 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12740 transposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12750 retrotransposon protein, putative, LINE subclass FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12760 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12770 NB-ARC domain containing protein, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12780 transposon protein, putative, unclassified, expressed FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12790 expressed protein FN2704-S Chr5 6790001 7345000 0 0 Deletion 554999 LOC_Os05g12800 expressed protein FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12670 expressed protein FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12680 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12700 retrotransposon protein, putative, unclassified FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12710 expressed protein FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12720 conserved hypothetical protein FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12730 expressed protein FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12740 transposon protein, putative, unclassified, expressed FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12750 retrotransposon protein, putative, LINE subclass FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12760 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12770 NB-ARC domain containing protein, expressed FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12780 transposon protein, putative, unclassified, expressed FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12790 expressed protein FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g12800 expressed protein FN2704-S Chr5 7267001 7347000 0 0 Deletion 79999 LOC_Os05g14070 expressed protein FN2704-S Chr5 8228097 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr5 8662127 G-A 0 0 Single Base Substitution 0 HET FN2704-S Chr5 8662127 G-A 0 0 Single Base Substitution 0 INTRON HET FN2704-S Chr5 8724279 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g15430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2704-S Chr5 9584360 T-A 0 0 Single Base Substitution 0 HET FN2704-S Chr6 10375738 Chr3 22587351 0 Translocation 0 FN2704-S Chr6 15165863 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr6 21553626 T-A 0 0 Single Base Substitution 0 Homo FN2704-S Chr6 21553626 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2704-S Chr6 22480986 22480986 0 0 Insertion 1 upstream_gene_variant HET FN2704-S Chr6 24628735 A-T 0 0 Single Base Substitution 0 HET FN2704-S Chr6 24628735 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr6 25819688 25819689 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os06g42980 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr6 25819688 25819689 0 0 Deletion 1 frameshift_variant Homo LOC_Os06g42980 retrotransposon protein, putative, unclassified, expressed FN2704-S Chr6 3688367 3688373 0 0 Deletion 6 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os06g07620 expressed protein FN2704-S Chr6 3688367 3688373 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os06g07620 expressed protein FN2704-S Chr6 4356001 4366000 0 0 Deletion 9999 LOC_Os06g08884 expressed protein FN2704-S Chr7 11905744 Chr4 16178237 0 Translocation 0 LOC_Os04g27380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2704-S Chr7 1789930 A-G 0 0 Single Base Substitution 0 INTRON HET FN2704-S Chr7 19044128 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr7 19156138 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr7 24597819 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g41090 histone deacetylase, putative, expressed FN2704-S Chr7 25999081 25999082 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os07g43420 MYB family transcription factor, putative, expressed FN2704-S Chr7 25999081 25999082 0 0 Deletion 1 frameshift_variant Homo LOC_Os07g43420 MYB family transcription factor, putative, expressed FN2704-S Chr7 641171 641175 0 0 Deletion 4 INTERGENIC HET FN2704-S Chr7 8404042 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr7 9320330 Chr4 3213283 0 Translocation 0 LOC_Os07g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2704-S Chr8 1330572 1330572 0 0 Insertion 2 intron_variant HET FN2704-S Chr8 14880098 Chr3 23141741 0 Translocation 0 FN2704-S Chr8 15885406 15885410 0 0 Deletion 4 HET FN2704-S Chr8 15885406 15885410 0 0 Deletion 4 INTERGENIC HET FN2704-S Chr8 16576616 16576617 0 0 Deletion 1 HET FN2704-S Chr8 16989257 G-A 0 0 Single Base Substitution 0 HET FN2704-S Chr8 16989257 G-A 0 0 Single Base Substitution 0 INTRON HET FN2704-S Chr8 21433171 T-C 0 0 Single Base Substitution 0 HET FN2704-S Chr8 27712017 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g44015 growth regulator related protein, putative, expressed FN2704-S Chr8 27712017 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g44015 growth regulator related protein, putative, expressed FN2704-S Chr8 28315571 T-A 0 0 Single Base Substitution 0 HET FN2704-S Chr8 3132034 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr8 3132034 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2704-S Chr8 4540191 T-A 0 0 Single Base Substitution 0 HET FN2704-S Chr8 5276209 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g09110 NB-ARC domain containing protein, expressed FN2704-S Chr8 7489187 7489215 0 0 Deletion 28 FRAME_SHIFT HET LOC_Os08g12680 zinc finger domain, LSD1 subclass family protein, expressed FN2704-S Chr8 8537079 8537080 0 0 Deletion 1 HET FN2704-S Chr8 8807498 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2704-S Chr8 8918680 8918680 0 0 Insertion 10 splice_region_variant&intron_variant HET FN2704-S Chr8 8918680 8918680 0 0 Insertion 8 splice_region_variant&intron_variant HET FN2704-S Chr9 14324504 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr9 15626546 15626554 0 0 Deletion 8 HET FN2704-S Chr9 15626546 15626554 0 0 Deletion 8 INTERGENIC HET FN2704-S Chr9 20678867 20678878 0 0 Deletion 11 INTERGENIC HET FN2704-S Chr9 21196614 21196629 0 0 Deletion 15 UTR_3_PRIME HET FN2704-S Chr9 21749431 C-T 0 0 Single Base Substitution 0 HET FN2704-S Chr9 21749431 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2704-S Chr9 2206044 2206073 0 0 Deletion 29 FRAME_SHIFT HET LOC_Os09g04190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2704-S Chr9 4699954 Chr7 27254265 0 Translocation 0 FN2704-S Chr9 6106051 6106052 0 0 Deletion 1 INTERGENIC HET FN2704-S Chr9 849024 T-C 0 0 Single Base Substitution 0 HET FN2704-S Chr9 849024 T-C 0 0 Single Base Substitution 0 INTERGENIC HET